[INFO] fetching crate alignoth 0.13.0... [INFO] documenting alignoth-0.13.0 against 1.86.0 for beta-1.87-rustdoc-1 [INFO] extracting crate alignoth 0.13.0 into /workspace/builds/worker-5-tc1/source [INFO] validating manifest of crates.io crate alignoth 0.13.0 on toolchain 1.86.0 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.86.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate alignoth 0.13.0 [INFO] finished tweaking crates.io crate alignoth 0.13.0 [INFO] tweaked toml for crates.io crate alignoth 0.13.0 written to /workspace/builds/worker-5-tc1/source/Cargo.toml [INFO] crate crates.io crate alignoth 0.13.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.86.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded pest_derive v2.7.10 [INFO] [stderr] Downloaded pest_meta v2.7.10 [INFO] [stderr] Downloaded pest_generator v2.7.10 [INFO] [stderr] Downloaded linear-map v1.2.0 [INFO] [stderr] Downloaded itertools-num v0.1.3 [INFO] [stderr] Downloaded fs-utils v1.1.4 [INFO] [stderr] Downloaded ieee754 v0.2.6 [INFO] [stderr] Downloaded multimap v0.9.1 [INFO] [stderr] Downloaded editdistancek v1.0.2 [INFO] [stderr] Downloaded bio-types v1.0.1 [INFO] [stderr] Downloaded triple_accel v0.4.0 [INFO] [stderr] Downloaded wide v0.7.24 [INFO] [stderr] Downloaded statrs v0.16.1 [INFO] [stderr] Downloaded pest v2.7.10 [INFO] [stderr] Downloaded rust-htslib v0.47.0 [INFO] [stderr] Downloaded bio v2.0.3 [INFO] [stderr] Downloaded rustls-webpki v0.102.4 [INFO] [stderr] Downloaded rustls v0.23.10 [INFO] [stderr] Downloaded curl-sys v0.4.72+curl-8.6.0 [INFO] [stderr] Downloaded hts-sys v2.1.4 [INFO] [stderr] Downloaded openssl-src v300.3.1+3.3.1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0b074c097205a61b89e8ad263052f976b2b332c4dc5f02aef1fe52501660d6e" "/opt/rustwide/cargo-home/bin/cargo" "+1.86.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 3ca0ec0e4638c61b7a0162dfab3a7fd3cec57067bb4b1ae30dca0717b93c09f5 [INFO] running `Command { std: "docker" "start" "-a" "3ca0ec0e4638c61b7a0162dfab3a7fd3cec57067bb4b1ae30dca0717b93c09f5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "3ca0ec0e4638c61b7a0162dfab3a7fd3cec57067bb4b1ae30dca0717b93c09f5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "3ca0ec0e4638c61b7a0162dfab3a7fd3cec57067bb4b1ae30dca0717b93c09f5", kill_on_drop: false }` [INFO] [stdout] 3ca0ec0e4638c61b7a0162dfab3a7fd3cec57067bb4b1ae30dca0717b93c09f5 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0b074c097205a61b89e8ad263052f976b2b332c4dc5f02aef1fe52501660d6e" "/opt/rustwide/cargo-home/bin/cargo" "+1.86.0" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 9a993d46cf5997b662dc7cb721be579e873b8644d5b51c9f634f0a567a31487f [INFO] running `Command { std: "docker" "start" "-a" "9a993d46cf5997b662dc7cb721be579e873b8644d5b51c9f634f0a567a31487f", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.85 [INFO] [stderr] Compiling unicode-ident v1.0.12 [INFO] [stderr] Compiling libc v0.2.155 [INFO] [stderr] Compiling autocfg v1.3.0 [INFO] [stderr] Compiling once_cell v1.19.0 [INFO] [stderr] Compiling pkg-config v0.3.30 [INFO] [stderr] Compiling libm v0.2.8 [INFO] [stderr] Compiling vcpkg v0.2.15 [INFO] [stderr] Checking smallvec v1.13.2 [INFO] [stderr] Checking memchr v2.7.4 [INFO] [stderr] Checking itoa v1.0.11 [INFO] [stderr] Checking stable_deref_trait v1.2.0 [INFO] [stderr] Compiling serde v1.0.210 [INFO] [stderr] Compiling regex-syntax v0.8.4 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling parking_lot_core v0.9.10 [INFO] [stderr] Compiling thiserror v1.0.61 [INFO] [stderr] Checking pin-project-lite v0.2.14 [INFO] [stderr] Checking bytes v1.6.0 [INFO] [stderr] Checking futures-core v0.3.30 [INFO] [stderr] Checking scopeguard v1.2.0 [INFO] [stderr] Checking writeable v0.5.5 [INFO] [stderr] Compiling glob v0.3.1 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling lock_api v0.4.12 [INFO] [stderr] Compiling siphasher v0.3.11 [INFO] [stderr] Checking litemap v0.7.3 [INFO] [stderr] Checking log v0.4.22 [INFO] [stderr] Compiling phf_shared v0.11.2 [INFO] [stderr] Checking fnv v1.0.7 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Checking hashbrown v0.14.5 [INFO] [stderr] Compiling version_check v0.9.4 [INFO] [stderr] Compiling clang-sys v1.8.1 [INFO] [stderr] Checking equivalent v1.0.1 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling slab v0.4.9 [INFO] [stderr] Checking icu_locid_transform_data v1.5.0 [INFO] [stderr] Compiling minimal-lexical v0.2.1 [INFO] [stderr] Checking http v1.1.0 [INFO] [stderr] Checking bitflags v2.5.0 [INFO] [stderr] Compiling crossbeam-utils v0.8.20 [INFO] [stderr] Checking aho-corasick v1.1.3 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Checking ppv-lite86 v0.2.17 [INFO] [stderr] Checking pin-utils v0.1.0 [INFO] [stderr] Checking futures-task v0.3.30 [INFO] [stderr] Checking futures-util v0.3.30 [INFO] [stderr] Compiling nom v7.1.3 [INFO] [stderr] Compiling libloading v0.8.3 [INFO] [stderr] Checking tracing-core v0.1.32 [INFO] [stderr] Compiling matrixmultiply v0.3.8 [INFO] [stderr] Compiling quote v1.0.36 [INFO] [stderr] Compiling jobserver v0.1.31 [INFO] [stderr] Compiling phf_generator v0.11.2 [INFO] [stderr] Checking ryu v1.0.18 [INFO] [stderr] Checking icu_properties_data v1.5.0 [INFO] [stderr] Compiling cc v1.0.99 [INFO] [stderr] Checking socket2 v0.5.7 [INFO] [stderr] Checking mio v1.0.2 [INFO] [stderr] Checking signal-hook-registry v1.4.2 [INFO] [stderr] Checking getrandom v0.2.15 [INFO] [stderr] Checking indexmap v2.2.6 [INFO] [stderr] Compiling syn v2.0.66 [INFO] [stderr] Checking percent-encoding v2.3.1 [INFO] [stderr] Compiling either v1.12.0 [INFO] [stderr] Compiling regex-automata v0.4.7 [INFO] [stderr] Checking parking_lot v0.12.3 [INFO] [stderr] Checking foreign-types-shared v0.1.1 [INFO] [stderr] Checking futures-sink v0.3.30 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Compiling rustversion v1.0.17 [INFO] [stderr] Compiling openssl v0.10.64 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling bindgen v0.69.4 [INFO] [stderr] Checking bytemuck v1.16.0 [INFO] [stderr] Compiling paste v1.0.15 [INFO] [stderr] Compiling openssl-src v300.3.1+3.3.1 [INFO] [stderr] Compiling cmake v0.1.50 [INFO] [stderr] Compiling httparse v1.9.4 [INFO] [stderr] Checking safe_arch v0.7.2 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling itertools v0.12.1 [INFO] [stderr] Checking foreign-types v0.3.2 [INFO] [stderr] Checking num-complex v0.4.6 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Checking http-body v1.0.0 [INFO] [stderr] Compiling phf_codegen v0.11.2 [INFO] [stderr] Checking tracing v0.1.40 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Compiling phf v0.11.2 [INFO] [stderr] Compiling typenum v1.17.0 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling ucd-trie v0.1.6 [INFO] [stderr] Compiling openssl-sys v0.9.102 [INFO] [stderr] Compiling libz-sys v1.1.18 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Compiling bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Compiling curl-sys v0.4.72+curl-8.6.0 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Checking utf16_iter v1.0.5 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Checking icu_normalizer_data v1.5.0 [INFO] [stderr] Checking try-lock v0.2.5 [INFO] [stderr] Checking utf8_iter v1.0.4 [INFO] [stderr] Compiling regex v1.10.5 [INFO] [stderr] Checking atomic-waker v1.1.2 [INFO] [stderr] Checking write16 v1.0.0 [INFO] [stderr] Compiling native-tls v0.2.12 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Compiling cexpr v0.6.0 [INFO] [stderr] Checking want v0.3.1 [INFO] [stderr] Checking crossbeam-epoch v0.9.18 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking wide v0.7.24 [INFO] [stderr] Compiling parse-zoneinfo v0.3.1 [INFO] [stderr] Checking form_urlencoded v1.2.1 [INFO] [stderr] Checking approx v0.5.1 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Checking bstr v1.9.1 [INFO] [stderr] Checking futures-channel v0.3.30 [INFO] [stderr] Checking same-file v1.0.6 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Checking unic-char-range v0.9.0 [INFO] [stderr] Checking openssl-probe v0.1.5 [INFO] [stderr] Compiling chrono-tz-build v0.3.0 [INFO] [stderr] Checking unic-common v0.9.0 [INFO] [stderr] Checking tower-service v0.3.2 [INFO] [stderr] Compiling heck v0.4.1 [INFO] [stderr] Checking tower-layer v0.3.2 [INFO] [stderr] Checking unic-ucd-version v0.9.0 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Checking unic-char-property v0.9.0 [INFO] [stderr] Checking walkdir v2.5.0 [INFO] [stderr] Checking crossbeam-deque v0.8.5 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Checking num-rational v0.4.2 [INFO] [stderr] Compiling chrono-tz v0.9.0 [INFO] [stderr] Compiling unicode-segmentation v1.11.0 [INFO] [stderr] Compiling time-core v0.1.2 [INFO] [stderr] Compiling anyhow v1.0.89 [INFO] [stderr] Checking unicode-width v0.1.13 [INFO] [stderr] Compiling serde_json v1.0.128 [INFO] [stderr] Checking iana-time-zone v0.1.60 [INFO] [stderr] Checking byteorder v1.5.0 [INFO] [stderr] Checking deranged v0.3.11 [INFO] [stderr] Checking globset v0.4.14 [INFO] [stderr] Checking chrono v0.4.38 [INFO] [stderr] Compiling nalgebra-macros v0.1.0 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Checking ignore v0.4.22 [INFO] [stderr] Compiling heck v0.3.3 [INFO] [stderr] Checking textwrap v0.11.0 [INFO] [stderr] Compiling time-macros v0.2.18 [INFO] [stderr] Checking simba v0.6.0 [INFO] [stderr] Checking unic-ucd-segment v0.9.0 [INFO] [stderr] Checking http-body-util v0.1.2 [INFO] [stderr] Checking atty v0.2.14 [INFO] [stderr] Checking csv-core v0.1.11 [INFO] [stderr] Checking num_threads v0.1.7 [INFO] [stderr] Checking bit-vec v0.8.0 [INFO] [stderr] Checking base64 v0.22.1 [INFO] [stderr] Checking ansi_term v0.12.1 [INFO] [stderr] Checking fixedbitset v0.4.2 [INFO] [stderr] Checking strsim v0.8.0 [INFO] [stderr] Checking bitflags v1.3.2 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking deunicode v1.6.0 [INFO] [stderr] Checking rustls-pki-types v1.7.0 [INFO] [stderr] Checking bit-set v0.8.0 [INFO] [stderr] Compiling structopt-derive v0.4.18 [INFO] [stderr] Checking slug v0.1.5 [INFO] [stderr] Checking petgraph v0.6.5 [INFO] [stderr] Checking globwalk v0.9.1 [INFO] [stderr] Checking fxhash v0.2.1 [INFO] [stderr] Checking unic-segment v0.9.0 [INFO] [stderr] Checking ndarray v0.15.6 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking itertools v0.13.0 [INFO] [stderr] Checking ordered-float v4.2.2 [INFO] [stderr] Checking humansize v2.1.3 [INFO] [stderr] Checking sync_wrapper v1.0.1 [INFO] [stderr] Checking encoding_rs v0.8.34 [INFO] [stderr] Checking bytecount v0.6.8 [INFO] [stderr] Checking rustls-pemfile v2.1.2 [INFO] [stderr] Checking editdistancek v1.0.2 [INFO] [stderr] Checking termcolor v1.4.1 [INFO] [stderr] Checking mime v0.3.17 [INFO] [stderr] Checking ipnet v2.9.0 [INFO] [stderr] Checking strum v0.25.0 [INFO] [stderr] Checking linear-map v1.2.0 [INFO] [stderr] Checking triple_accel v0.4.0 [INFO] [stderr] Checking time v0.3.36 [INFO] [stderr] Checking ieee754 v0.2.6 [INFO] [stderr] Checking simplelog v0.12.2 [INFO] [stderr] Compiling synstructure v0.13.1 [INFO] [stderr] Compiling zerofrom-derive v0.1.4 [INFO] [stderr] Compiling yoke-derive v0.7.4 [INFO] [stderr] Compiling serde_derive v1.0.210 [INFO] [stderr] Compiling zerovec-derive v0.10.2 [INFO] [stderr] Compiling displaydoc v0.2.4 [INFO] [stderr] Compiling thiserror-impl v1.0.61 [INFO] [stderr] Compiling tokio-macros v2.4.0 [INFO] [stderr] Compiling icu_provider_macros v1.5.0 [INFO] [stderr] Compiling pin-project-internal v1.1.5 [INFO] [stderr] Compiling openssl-macros v0.1.1 [INFO] [stderr] Compiling strum_macros v0.25.3 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Checking enum-map v2.7.3 [INFO] [stderr] Checking tokio v1.40.0 [INFO] [stderr] Checking nalgebra v0.29.0 [INFO] [stderr] Compiling pest v2.7.10 [INFO] [stderr] Checking pin-project v1.1.5 [INFO] [stderr] Checking zerofrom v0.1.4 [INFO] [stderr] Checking bio-types v1.0.1 [INFO] [stderr] Checking yoke v0.7.4 [INFO] [stderr] Checking zerovec v0.10.2 [INFO] [stderr] Compiling pest_meta v2.7.10 [INFO] [stderr] Checking tinystr v0.7.6 [INFO] [stderr] Checking icu_collections v1.5.0 [INFO] [stderr] Checking icu_locid v1.5.0 [INFO] [stderr] Compiling pest_generator v2.7.10 [INFO] [stderr] Compiling hts-sys v2.1.4 [INFO] [stderr] Checking icu_provider v1.5.0 [INFO] [stderr] Checking icu_locid_transform v1.5.0 [INFO] [stderr] Compiling pest_derive v2.7.10 [INFO] [stderr] Checking icu_properties v1.5.0 [INFO] [stderr] Checking tokio-util v0.7.11 [INFO] [stderr] Checking tower v0.4.13 [INFO] [stderr] Checking h2 v0.4.5 [INFO] [stderr] Checking icu_normalizer v1.5.0 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking csv v1.3.0 [INFO] [stderr] Checking serde_urlencoded v0.7.1 [INFO] [stderr] Checking multimap v0.9.1 [INFO] [stderr] Checking clap v2.34.0 [INFO] [stderr] Checking idna v1.0.0 [INFO] [stderr] Checking url v2.5.1 [INFO] [stderr] Checking tera v1.20.0 [INFO] [stderr] Checking structopt v0.3.26 [INFO] [stderr] Checking hyper v1.3.1 [INFO] [stderr] Checking hyper-util v0.1.5 [INFO] [stderr] Checking statrs v0.16.1 [INFO] [stderr] Checking bio v2.0.3 [INFO] [stderr] Checking tokio-native-tls v0.3.1 [INFO] [stderr] Checking hyper-tls v0.6.0 [INFO] [stderr] Checking reqwest v0.12.7 [INFO] [stderr] Checking rust-htslib v0.47.0 [INFO] [stderr] Documenting alignoth v0.13.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unclosed HTML tag `InnerPlotCigar` [INFO] [stdout] --> src/plot.rs:295:101 [INFO] [stdout] | [INFO] [stdout] 295 | /// Matches a given read sequence against a given reference sequence and returning the result as Vec [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(rustdoc::invalid_html_tags)]` on by default [INFO] [stdout] help: try marking as source code [INFO] [stdout] | [INFO] [stdout] 295 | /// Matches a given read sequence against a given reference sequence and returning the result as `Vec` [INFO] [stdout] | + + [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 3m 23s [INFO] [stderr] Generated /opt/rustwide/target/doc/alignoth/index.html [INFO] running `Command { std: "docker" "inspect" "9a993d46cf5997b662dc7cb721be579e873b8644d5b51c9f634f0a567a31487f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "9a993d46cf5997b662dc7cb721be579e873b8644d5b51c9f634f0a567a31487f", kill_on_drop: false }` [INFO] [stdout] 9a993d46cf5997b662dc7cb721be579e873b8644d5b51c9f634f0a567a31487f