[INFO] fetching crate ngs 0.4.0... [INFO] testing ngs-0.4.0 against beta-2025-04-13 for beta-1.87-1 [INFO] extracting crate ngs 0.4.0 into /workspace/builds/worker-5-tc2/source [INFO] validating manifest of crates.io crate ngs 0.4.0 on toolchain beta-2025-04-13 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-04-13" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] removed /workspace/builds/worker-5-tc2/source/.cargo/config [INFO] started tweaking crates.io crate ngs 0.4.0 [INFO] finished tweaking crates.io crate ngs 0.4.0 [INFO] tweaked toml for crates.io crate ngs 0.4.0 written to /workspace/builds/worker-5-tc2/source/Cargo.toml [INFO] crate crates.io crate ngs 0.4.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-04-13" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0b074c097205a61b89e8ad263052f976b2b332c4dc5f02aef1fe52501660d6e" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-04-13" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 2d1835d4b8376194fa8f11438a671a5beacdfc6d576f28552aca7babdb49fc2f [INFO] running `Command { std: "docker" "start" "-a" "2d1835d4b8376194fa8f11438a671a5beacdfc6d576f28552aca7babdb49fc2f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "2d1835d4b8376194fa8f11438a671a5beacdfc6d576f28552aca7babdb49fc2f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2d1835d4b8376194fa8f11438a671a5beacdfc6d576f28552aca7babdb49fc2f", kill_on_drop: false }` [INFO] [stdout] 2d1835d4b8376194fa8f11438a671a5beacdfc6d576f28552aca7babdb49fc2f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0b074c097205a61b89e8ad263052f976b2b332c4dc5f02aef1fe52501660d6e" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-04-13" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] c1ef4198a502698da3a7fb86d142757df41afdc30a29ac20e6db7eda687a6fd7 [INFO] running `Command { std: "docker" "start" "-a" "c1ef4198a502698da3a7fb86d142757df41afdc30a29ac20e6db7eda687a6fd7", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.46 [INFO] [stderr] Compiling unicode-ident v1.0.4 [INFO] [stderr] Compiling quote v1.0.21 [INFO] [stderr] Compiling syn v1.0.101 [INFO] [stderr] Compiling libc v0.2.134 [INFO] [stderr] Compiling autocfg v1.1.0 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling version_check v0.9.4 [INFO] [stderr] Compiling memchr v2.5.0 [INFO] [stderr] Compiling serde_derive v1.0.145 [INFO] [stderr] Compiling futures-core v0.3.24 [INFO] [stderr] Compiling pin-project-lite v0.2.9 [INFO] [stderr] Compiling once_cell v1.15.0 [INFO] [stderr] Compiling futures-sink v0.3.24 [INFO] [stderr] Compiling futures-task v0.3.24 [INFO] [stderr] Compiling futures-channel v0.3.24 [INFO] [stderr] Compiling serde v1.0.145 [INFO] [stderr] Compiling futures-util v0.3.24 [INFO] [stderr] Compiling pin-utils v0.1.0 [INFO] [stderr] Compiling crc32fast v1.3.2 [INFO] [stderr] Compiling tracing-core v0.1.29 [INFO] [stderr] Compiling bytes v1.2.1 [INFO] [stderr] Compiling futures-io v0.3.24 [INFO] [stderr] Compiling adler v1.0.2 [INFO] [stderr] Compiling pkg-config v0.3.25 [INFO] [stderr] Compiling itoa v1.0.3 [INFO] [stderr] Compiling static_assertions v1.1.0 [INFO] [stderr] Compiling unicase v2.6.0 [INFO] [stderr] Compiling cc v1.0.73 [INFO] [stderr] Compiling crossbeam-utils v0.8.12 [INFO] [stderr] Compiling miniz_oxide v0.5.4 [INFO] [stderr] Compiling lexical-util v0.8.5 [INFO] [stderr] Compiling ryu v1.0.11 [INFO] [stderr] Compiling hashbrown v0.12.3 [INFO] [stderr] Compiling typenum v1.15.0 [INFO] [stderr] Compiling slab v0.4.7 [INFO] [stderr] Compiling tokio v1.21.2 [INFO] [stderr] Compiling indexmap v1.9.1 [INFO] [stderr] Compiling generic-array v0.14.6 [INFO] [stderr] Compiling num_cpus v1.13.1 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling strsim v0.10.0 [INFO] [stderr] Compiling libm v0.2.5 [INFO] [stderr] Compiling num-traits v0.2.15 [INFO] [stderr] Compiling flate2 v1.0.24 [INFO] [stderr] Compiling mime_guess v2.0.4 [INFO] [stderr] Compiling crossbeam-channel v0.5.6 [INFO] [stderr] Compiling ident_case v1.0.1 [INFO] [stderr] Compiling byteorder v1.4.3 [INFO] [stderr] Compiling noodles-core v0.11.0 [INFO] [stderr] Compiling fnv v1.0.7 [INFO] [stderr] Compiling minimal-lexical v0.2.1 [INFO] [stderr] Compiling lexical-write-integer v0.8.5 [INFO] [stderr] Compiling lexical-parse-integer v0.8.6 [INFO] [stderr] Compiling serde_json v1.0.85 [INFO] [stderr] Compiling mime v0.3.16 [INFO] [stderr] Compiling bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Compiling lzma-sys v0.1.19 [INFO] [stderr] Compiling getrandom v0.2.7 [INFO] [stderr] Compiling lexical-parse-float v0.8.5 [INFO] [stderr] Compiling lexical-write-float v0.8.5 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Compiling askama_escape v0.10.3 [INFO] [stderr] Compiling bitflags v1.3.2 [INFO] [stderr] Compiling percent-encoding v2.2.0 [INFO] [stderr] Compiling bit-vec v0.6.3 [INFO] [stderr] Compiling nom v7.1.1 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Compiling ppv-lite86 v0.2.16 [INFO] [stderr] Compiling log v0.4.17 [INFO] [stderr] Compiling lexical-core v0.8.5 [INFO] [stderr] Compiling dirs-sys-next v0.1.2 [INFO] [stderr] Compiling arrayvec v0.4.12 [INFO] [stderr] Compiling num_threads v0.1.6 [INFO] [stderr] Compiling time-macros v0.2.4 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling itoa v0.4.8 [INFO] [stderr] Compiling erased-serde v0.3.23 [INFO] [stderr] Compiling regex-automata v0.1.10 [INFO] [stderr] Compiling crypto-common v0.1.6 [INFO] [stderr] Compiling block-buffer v0.10.3 [INFO] [stderr] Compiling humansize v1.1.1 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling digest v0.10.5 [INFO] [stderr] Compiling dirs-next v2.0.0 [INFO] [stderr] Compiling xz2 v0.1.7 [INFO] [stderr] Compiling md-5 v0.10.5 [INFO] [stderr] Compiling terminal_size v0.1.17 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling aho-corasick v0.7.19 [INFO] [stderr] Compiling csv-core v0.1.10 [INFO] [stderr] Compiling nodrop v0.1.14 [INFO] [stderr] Compiling regex-syntax v0.6.27 [INFO] [stderr] Compiling heck v0.4.0 [INFO] [stderr] Compiling anyhow v1.0.65 [INFO] [stderr] Compiling os_str_bytes v6.3.0 [INFO] [stderr] Compiling console v0.15.2 [INFO] [stderr] Compiling bzip2 v0.4.3 [INFO] [stderr] Compiling tracing-log v0.1.3 [INFO] [stderr] Compiling term v0.7.0 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling clap_lex v0.3.0 [INFO] [stderr] Compiling noodles-gff v0.11.0 [INFO] [stderr] Compiling sharded-slab v0.1.4 [INFO] [stderr] Compiling thread_local v1.1.4 [INFO] [stderr] Compiling unicode-width v0.1.10 [INFO] [stderr] Compiling either v1.8.0 [INFO] [stderr] Compiling encode_unicode v1.0.0 [INFO] [stderr] Compiling number_prefix v0.4.0 [INFO] [stderr] Compiling dyn-clone v1.0.9 [INFO] [stderr] Compiling no-std-compat v0.4.1 [INFO] [stderr] Compiling termcolor v1.1.3 [INFO] [stderr] Compiling smallvec v1.9.0 [INFO] [stderr] Compiling ansi_term v0.12.1 [INFO] [stderr] Compiling itertools v0.10.5 [INFO] [stderr] Compiling async-compression v0.3.15 [INFO] [stderr] Compiling tracing-subscriber v0.3.15 [INFO] [stderr] Compiling num-format v0.4.0 [INFO] [stderr] Compiling rust-lapper v1.1.0 [INFO] [stderr] Compiling time v0.3.14 [INFO] [stderr] Compiling regex v1.6.0 [INFO] [stderr] Compiling darling_core v0.14.1 [INFO] [stderr] Compiling futures-macro v0.3.24 [INFO] [stderr] Compiling tracing-attributes v0.1.22 [INFO] [stderr] Compiling clap_derive v4.0.10 [INFO] [stderr] Compiling serde_repr v0.1.9 [INFO] [stderr] Compiling git-testament-derive v0.1.13 [INFO] [stderr] Compiling indicatif v0.16.2 [INFO] [stderr] Compiling darling_macro v0.14.1 [INFO] [stderr] Compiling git-testament v0.2.1 [INFO] [stderr] Compiling darling v0.14.1 [INFO] [stderr] Compiling tracing v0.1.36 [INFO] [stderr] Compiling serde_with_macros v2.0.1 [INFO] [stderr] Compiling plotly_derive v0.8.1 [INFO] [stderr] Compiling tokio-util v0.7.4 [INFO] [stderr] Compiling clap v4.0.10 [INFO] [stderr] Compiling futures-executor v0.3.24 [INFO] [stderr] Compiling futures v0.3.24 [INFO] [stderr] Compiling noodles-bgzf v0.20.0 [INFO] [stderr] Compiling noodles-fastq v0.6.0 [INFO] [stderr] Compiling noodles-fasta v0.20.0 [INFO] [stderr] Compiling noodles-csi v0.14.0 [INFO] [stderr] Compiling noodles-sam v0.25.0 [INFO] [stderr] Compiling noodles-bam v0.28.0 [INFO] [stderr] Compiling noodles-cram v0.25.0 [INFO] [stderr] Compiling toml v0.5.9 [INFO] [stderr] Compiling bstr v0.2.17 [INFO] [stderr] Compiling serde_with v2.0.1 [INFO] [stderr] Compiling csv v1.1.6 [INFO] [stderr] Compiling askama_shared v0.12.2 [INFO] [stderr] Compiling noodles v0.34.0 [INFO] [stderr] Compiling prettytable-rs v0.9.0 [INFO] [stderr] Compiling askama_derive v0.11.2 [INFO] [stderr] Compiling askama v0.11.1 [INFO] [stderr] Compiling plotly v0.8.1 [INFO] [stderr] Compiling ngs v0.4.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 00s [INFO] running `Command { std: "docker" "inspect" "c1ef4198a502698da3a7fb86d142757df41afdc30a29ac20e6db7eda687a6fd7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c1ef4198a502698da3a7fb86d142757df41afdc30a29ac20e6db7eda687a6fd7", kill_on_drop: false }` [INFO] [stdout] c1ef4198a502698da3a7fb86d142757df41afdc30a29ac20e6db7eda687a6fd7 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0b074c097205a61b89e8ad263052f976b2b332c4dc5f02aef1fe52501660d6e" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-04-13" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] a3c3e503abcdc64a4cb59612bf4d5c6f0eeab745247725288bfd62cc30bb8cea [INFO] running `Command { std: "docker" "start" "-a" "a3c3e503abcdc64a4cb59612bf4d5c6f0eeab745247725288bfd62cc30bb8cea", kill_on_drop: false }` [INFO] [stderr] Compiling ngs v0.4.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 7.78s [INFO] running `Command { std: "docker" "inspect" "a3c3e503abcdc64a4cb59612bf4d5c6f0eeab745247725288bfd62cc30bb8cea", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a3c3e503abcdc64a4cb59612bf4d5c6f0eeab745247725288bfd62cc30bb8cea", kill_on_drop: false }` [INFO] [stdout] a3c3e503abcdc64a4cb59612bf4d5c6f0eeab745247725288bfd62cc30bb8cea [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0b074c097205a61b89e8ad263052f976b2b332c4dc5f02aef1fe52501660d6e" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-04-13" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 384e1c76e06bc41b254f615f17d6afaa11c0bbf3f0ad3bb49428f5575589fb6d [INFO] running `Command { std: "docker" "start" "-a" "384e1c76e06bc41b254f615f17d6afaa11c0bbf3f0ad3bb49428f5575589fb6d", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.42s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/ngs-de0c54ed9fc28dc4) [INFO] [stdout] [INFO] [stdout] running 70 tests [INFO] [stdout] test derive::instrument::compute::tests::test_derive_instrument_from_invalid_flowcell_name ... ok [INFO] [stdout] test derive::instrument::reads::tests::test_parse_illumina_1_4_fmt ... ok [INFO] [stdout] test derive::instrument::compute::tests::test_derive_instrument_medium_flowcell_evidence ... ok [INFO] [stdout] test derive::instrument::reads::tests::test_parse_failure ... ok [INFO] [stdout] test derive::instrument::compute::tests::test_derive_instrument_from_valid_flowcell_name ... ok [INFO] [stdout] test generate::providers::reference_provider::tests::test_invalid_str_bad_error_frequency ... ok [INFO] [stdout] test derive::instrument::reads::tests::test_parse_illumina_1_8_fmt ... ok [INFO] [stdout] test derive::instrument::compute::tests::test_derive_instrument_low_flowcell_evidence ... ok [INFO] [stdout] test generate::providers::reference_provider::tests::test_invalid_str_malformed ... ok [INFO] [stdout] test generate::providers::reference_provider::tests::test_invalid_str_bad_weight ... ok [INFO] [stdout] test generate::providers::reference_provider::tests::test_invalid_str_bad_read_length ... ok [INFO] [stdout] test generate::providers::reference_provider::tests::test_valid_str ... ok [INFO] [stdout] test generate::utils::tests::test_compliment_invalid ... ok [INFO] [stdout] test utils::alignment::tests::it_catches_a_malformed_record_with_too_few_record_bases ... ok [INFO] [stdout] test generate::utils::tests::test_compliment_valid ... ok [INFO] [stdout] test qc::tests::it_returns_the_correct_number_of_facets_by_default ... ok [INFO] [stdout] test qc::record_based::gc_content::tests::it_defaults_with_zero_based_100_capacity_histogram ... ok [INFO] [stdout] test qc::tests::it_returns_the_correct_number_of_facets_when_only_is_specified ... ok [INFO] [stdout] test utils::alignment::tests::it_correctly_handles_softclips ... ok [INFO] [stdout] test generate::providers::reference_provider::tests::test_invalid_str_bad_std_dev ... ok [INFO] [stdout] test utils::formats::fasta::phred::tests::it_correctly_computes_probabilities ... ok [INFO] [stdout] test generate::providers::reference_provider::tests::test_invalid_str_bad_mean ... ok [INFO] [stdout] test utils::formats::fasta::phred::tests::it_correctly_converts_from_chars ... ok [INFO] [stdout] test utils::alignment::tests::it_correctly_returns_zero_edits_when_sequences_are_identical ... ok [INFO] [stdout] test utils::alignment::tests::it_correctly_returns_one_edit_when_sequences_have_one_edit ... ok [INFO] [stdout] test utils::formats::fasta::phred::tests::it_correctly_converts_to_chars ... ok [INFO] [stdout] test utils::formats::fasta::phred::tests::it_is_not_valid_from_a_score_thats_too_high ... ok [INFO] [stdout] test utils::formats::fasta::phred::tests::it_is_valid_from_a_lowest_score ... ok [INFO] [stdout] test utils::formats::sam::tests::test_illumina_lowercase_fix ... ok [INFO] [stdout] test utils::formats::tests::it_correctly_identifies_bam_files ... ok [INFO] [stdout] test utils::alignment::tests::it_catches_a_malformed_record_with_too_few_reference_bases ... ok [INFO] [stdout] test utils::formats::tests::it_correctly_identifies_bed_files ... ok [INFO] [stdout] test utils::formats::tests::it_correctly_identifies_fastq_files ... ok [INFO] [stdout] test utils::formats::tests::it_correctly_identifies_gtf_files ... ok [INFO] [stdout] test utils::formats::tests::it_correctly_identifies_gff_files ... ok [INFO] [stdout] test utils::formats::tests::it_correctly_identifies_fasta_files ... ok [INFO] [stdout] test utils::formats::tests::it_correctly_identifies_bcf_files ... ok [INFO] [stdout] test utils::formats::tests::it_correctly_identifies_ubam_files ... ok [INFO] [stdout] test utils::formats::tests::it_correctly_identifies_vcf_files ... ok [INFO] [stdout] test utils::genome::ncbi::grch38_no_alt::tests::it_contains_the_epstein_barr_virus ... ok [INFO] [stdout] test utils::formats::tests::it_correctly_identifies_cram_files ... ok [INFO] [stdout] test utils::genome::ncbi::grch38_no_alt::tests::it_has_the_correct_number_of_decoy_sequences ... ok [INFO] [stdout] test utils::genome::ncbi::grch38_no_alt::tests::it_has_the_correct_number_of_sequence_in_the_primary_assembly ... ok [INFO] [stdout] test utils::genome::ncbi::grch38_no_alt::tests::it_contains_the_mitochodrion_chromosome ... ok [INFO] [stdout] test utils::genome::ncbi::grch38_no_alt::tests::it_has_the_correct_number_of_unplaced_sequences ... ok [INFO] [stdout] test utils::genome::ncbi::grch38_no_alt::tests::it_does_not_contain_any_alternative_contigs ... ok [INFO] [stdout] test utils::genome::ncbi::grch38_no_alt::tests::it_has_the_correct_number_of_autosomes ... ok [INFO] [stdout] test utils::formats::tests::it_correctly_identifies_sam_files ... ok [INFO] [stdout] test utils::genome::ncbi::grch38_no_alt::tests::it_does_not_contain_any_other_sequences ... ok [INFO] [stdout] test utils::genome::ncbi::grch38_no_alt::tests::it_has_the_correct_number_of_sex_chromosomes ... ok [INFO] [stdout] test utils::histogram::tests::test_count_values_from_top ... ok [INFO] [stdout] test utils::genome::ncbi::grch38_no_alt::tests::it_has_the_correct_number_of_unlocalized_sequences ... ok [INFO] [stdout] test utils::histogram::tests::test_count_values_from_bottom ... ok [INFO] [stdout] test utils::histogram::tests::test_initialization ... ok [INFO] [stdout] test utils::histogram::tests::test_invalid_increments ... ok [INFO] [stdout] test utils::histogram::tests::test_valid_incremements_and_mean_median ... ok [INFO] [stdout] test utils::histogram::tests::test_median_on_empty_histogram ... ok [INFO] [stdout] test utils::histogram::tests::test_default_is_one_hundred_zero_based ... ok [INFO] [stdout] test derive::instrument::compute::tests::test_derive_instrument_conflicting_flowcell_and_instrument_evidence ... ok [INFO] [stdout] test derive::instrument::compute::tests::test_derive_instrument_conflicting_flowcell_ids ... ok [INFO] [stdout] test utils::histogram::tests::test_median_extensively ... ok [INFO] [stdout] test utils::histogram::tests::test_values ... ok [INFO] [stdout] test derive::instrument::compute::tests::test_derive_instrument_from_valid_instrument_name ... ok [INFO] [stdout] test utils::histogram::tests::test_values_normalized ... ok [INFO] [stdout] test derive::instrument::compute::tests::test_derive_instrument_from_invalid_instrument_name ... ok [INFO] [stdout] test derive::instrument::compute::tests::test_derive_instrument_medium_instrument_evidence ... ok [INFO] [stdout] test derive::instrument::compute::tests::test_derive_instrument_low_instrument_evidence ... ok [INFO] [stdout] test derive::instrument::compute::tests::test_derive_instrument_no_matches ... ok [INFO] [stdout] test derive::instrument::compute::tests::test_derive_instrument_novaseq_succesfully ... ok [INFO] [stdout] test derive::instrument::compute::tests::test_derive_instrument_conflicting_instrument_ids ... ok [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/debug/deps/ngs-b162e92eb4b7eed3) [INFO] [stdout] [INFO] [stdout] test result: ok. 70 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.27s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stdout] test tests::verify_cli ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests ngs [INFO] [stdout] [INFO] [stdout] running 10 tests [INFO] [stdout] test src/generate/utils.rs - generate::utils::compliment (line 90) ... FAILED [INFO] [stdout] test src/utils/histogram.rs - utils::histogram (line 60) ... FAILED [INFO] [stdout] test src/utils/histogram.rs - utils::histogram (line 85) ... FAILED [INFO] [stdout] test src/utils/histogram.rs - utils::histogram (line 98) ... FAILED [INFO] [stdout] test src/utils/histogram.rs - utils::histogram (line 72) ... FAILED [INFO] [stdout] test src/utils/pathbuf.rs - utils::pathbuf::AppendExtension::append_extension (line 45) ... FAILED [INFO] [stdout] test src/utils/genome.rs - utils::genome::ReferenceGenome::triplet_id (line 277) ... FAILED [INFO] [stdout] test src/utils/histogram.rs - utils::histogram (line 41) ... ok [INFO] [stdout] test src/utils/histogram.rs - utils::histogram::Histogram::in_range (line 241) ... ok [INFO] [stdout] test src/utils/pathbuf.rs - utils::pathbuf (line 20) ... ok [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- src/generate/utils.rs - generate::utils::compliment (line 90) stdout ---- [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/tmp/rustcezaiJY/symbols.o" "<2 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/{libngs-bf93129b75cf03bd.rlib,librust_lapper-1294cb2fb4b191d2.rlib,libnum_format-8e4cb8e345f3b7c2.rlib,libarrayvec-3617f28676f87902.rlib,libnodrop-48b37a631139088c.rlib,libitertools-81abc26392a6ebd3.rlib,libeither-a3c3165c89d9dfe8.rlib,libplotly-84f65f1a6aaffa1b.rlib,libserde_with-b235da31cc7525b9.rlib,liberased_serde-00347921093e96b5.rlib,libdyn_clone-4bf9241a5cd3dcfa.rlib,libaskama-9f64eece52a5405b.rlib,libaskama_shared-71fdbf77db0ba225.rlib,libtoml-66b96acdb1055a7d.rlib,libmime_guess-69518e25574ffaf4.rlib,libunicase-0a5560e076218c84.rlib,libsyn-8caaa7702bd8ccc5.rlib,libnom-7ff696981332af70.rlib,libmime-df56754a5ea019bb.rlib,libquote-fd9bcf9b8a112bec.rlib,libhumansize-77c6498259f554af.rlib,libserde_json-a3fbc409dc3f02bb.rlib,libitoa-16cfa8721381c1c3.rlib,libaskama_escape-34de53293195524f.rlib,libproc_macro2-285b9cf572459e9c.rlib,libunicode_ident-40d9fe3cc868d127.rlib}.rlib" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libproc_macro-*}.rlib" "/opt/rustwide/target/debug/deps/{libprettytable-2a16b1a1512904a7.rlib,libcsv-ec24af429660e573.rlib,libryu-038f6cdb33aa666f.rlib,libitoa-b1f590b0f223a482.rlib,libcsv_core-7347f19c40cf3129.rlib,libbstr-2b29b0807dfc36b5.rlib,libregex_automata-31d378b01f1978af.rlib,libunicode_width-e6feeb9daa4fd470.rlib,libencode_unicode-588f67c203900f18.rlib,libterm-f03fd69e2dc66d8d.rlib,libdirs_next-74bf90b82bda9c8f.rlib,libdirs_sys_next-1d188591eb6d3549.rlib,librand_distr-f38e16b203df10e3.rlib,libnum_traits-193c8b0c20d13636.rlib,librand-c78cd1cdd82118d8.rlib,librand_chacha-26bf44f990740447.rlib,libppv_lite86-f1eaae57f9caf7a8.rlib,librand_core-3f71533ba8de91b4.rlib,libgetrandom-f6681438525d2794.rlib,libindicatif-f64128a0e9cec632.rlib,libconsole-842746238fd585d5.rlib,libterminal_size-0c12704b8124bf93.rlib,liblazy_static-af860367908b8176.rlib,libnumber_prefix-6b994bedec76f9db.rlib,libserde-f2f7236503f29a9e.rlib,libregex-21e1e5a1d0d55726.rlib,libaho_corasick-9ff068df0d2a0cfc.rlib,libregex_syntax-00b81cede0cdc0da.rlib,libclap-bb380cd5d698d0a1.rlib,libatty-ad4ba561e7cd5fa2.rlib,libstrsim-934c6b5db5b11ce4.rlib,libclap_lex-a96a2ebcac8b4156.rlib,libos_str_bytes-fb7825282e1fd80e.rlib,libtermcolor-214b0416d5f44404.rlib,libnoodles-79a3bb73bde86726.rlib,libnoodles_gff-ca8ea2eeab9dacff.rlib,libpercent_encoding-bf512ecf668f0e68.rlib,libnoodles_fastq-bdc60f0beb86361d.rlib,libnoodles_cram-5ee8ee39b758c462.rlib,libmd5-4d38bbb392abcfc6.rlib,libdigest-bd87a09edbf86ca6.rlib,libblock_buffer-f9f08486edcf0ca7.rlib,libcrypto_common-6d174c837c3631a0.rlib,libgeneric_array-c1730078a55eb32e.rlib,libtypenum-35cb3744b4a64b8e.rlib,libasync_compression-27172d8dc6b2f917.rlib,libxz2-50336ed4a42d829e.rlib,liblzma_sys-b3ead72eba91f39f.rlib,libbzip2-a26c791c9cb1c534.rlib,libbzip2_sys-8800d0b8d6946223.rlib,libnoodles_bam-d15d1c2f8a0e7e8b.rlib,libnoodles_sam-ff70ffb7d437ca40.rlib,libbitflags-dde12b0d7d495b50.rlib,liblexical_core-53509516061ff388.rlib,liblexical_write_float-5ff64d4fc992089e.rlib,liblexical_write_integer-0a06b4b5cfa72cfc.rlib,liblexical_parse_float-b60f21eb25dbeba6.rlib,liblexical_parse_integer-0029f6ad1af953dc.rlib,liblexical_util-69862a507e6b363d.rlib,libstatic_assertions-f0217ecdd817a834.rlib,libindexmap-a77f9b9634cddb94.rlib,libhashbrown-cae2cd0d9cc0a6cf.rlib,libnoodles_fasta-43f2f9eeb1d5c645.rlib,libnoodles_csi-31ace3e865457d85.rlib,libbit_vec-1484b09fcc589a29.rlib,libnoodles_core-c5dfcb50b010dc40.rlib,libnoodles_bgzf-68c42a1e5cd602ee.rlib,libflate2-46ffeabd71e15f5c.rlib,libminiz_oxide-1ed6cc5c63e3e0c7.rlib,libadler-8a8ce72c9fb247b6.rlib,libcrc32fast-e5de59621c1c9ea3.rlib,libcrossbeam_channel-d1891cafbf29e280.rlib,libcrossbeam_utils-4578a535090afdc1.rlib,libbyteorder-fb36fe721788ce00.rlib,libtokio_util-a3e70b1f9380cd20.rlib,libtracing-fdb43d90ea02a9ee.rlib,libcfg_if-3e7fc4e38d4a72b5.rlib,libtracing_core-c4195af3c8b8941d.rlib,libonce_cell-85b28529bf6cae43.rlib,libtokio-5acb8389c21a5eab.rlib,libnum_cpus-77cf0ec96b962139.rlib,liblibc-3eaea441ca43b1d1.rlib,libbytes-90fa2233ca6ac0df.rlib,libfutures-8657b7a83737734b.rlib,libfutures_executor-5d809466b8c6d006.rlib,libfutures_util-cdceba66efc1439b.rlib,libmemchr-34c06a26bc9e8129.rlib,libfutures_io-0c8ed8839545e670.rlib,libslab-b1e702ccf3e927a6.rlib,libfutures_channel-3911ec92bfc9d79b.rlib,libpin_project_lite-6df6c214457c8ca7.rlib,libfutures_sink-44ced47ba5cc2bd4.rlib,libfutures_task-9126102c29749340.rlib,libpin_utils-3860774ad9b215b5.rlib,libfutures_core-f5c602f8eba8fbac.rlib,libanyhow-2eafe57cf09d012b.rlib}.rlib" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,libcfg_if-*,liblibc-*,liballoc-*,librustc_std_workspace_core-*,libcore-*,libcompiler_builtins-*}.rlib" "-Wl,-Bdynamic" "-llzma" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-L" "/tmp/rustcezaiJY/raw-dylibs" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/target/debug/build/bzip2-sys-f4fad42a742c2219/out/lib" "-L" "/usr/lib/x86_64-linux-gnu" "-L" "/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/tmp/rustdoctestPh79Ie/rust_out" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: collect2: fatal error: ld terminated with signal 9 [Killed] [INFO] [stdout] compilation terminated. [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 1 previous error [INFO] [stdout] [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] ---- src/utils/histogram.rs - utils::histogram (line 60) stdout ---- [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/tmp/rustca462XV/symbols.o" "<2 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/{libngs-bf93129b75cf03bd.rlib,librust_lapper-1294cb2fb4b191d2.rlib,libnum_format-8e4cb8e345f3b7c2.rlib,libarrayvec-3617f28676f87902.rlib,libnodrop-48b37a631139088c.rlib,libitertools-81abc26392a6ebd3.rlib,libeither-a3c3165c89d9dfe8.rlib,libplotly-84f65f1a6aaffa1b.rlib,libserde_with-b235da31cc7525b9.rlib,liberased_serde-00347921093e96b5.rlib,libdyn_clone-4bf9241a5cd3dcfa.rlib,libaskama-9f64eece52a5405b.rlib,libaskama_shared-71fdbf77db0ba225.rlib,libtoml-66b96acdb1055a7d.rlib,libmime_guess-69518e25574ffaf4.rlib,libunicase-0a5560e076218c84.rlib,libsyn-8caaa7702bd8ccc5.rlib,libnom-7ff696981332af70.rlib,libmime-df56754a5ea019bb.rlib,libquote-fd9bcf9b8a112bec.rlib,libhumansize-77c6498259f554af.rlib,libserde_json-a3fbc409dc3f02bb.rlib,libitoa-16cfa8721381c1c3.rlib,libaskama_escape-34de53293195524f.rlib,libproc_macro2-285b9cf572459e9c.rlib,libunicode_ident-40d9fe3cc868d127.rlib}.rlib" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libproc_macro-*}.rlib" "/opt/rustwide/target/debug/deps/{libprettytable-2a16b1a1512904a7.rlib,libcsv-ec24af429660e573.rlib,libryu-038f6cdb33aa666f.rlib,libitoa-b1f590b0f223a482.rlib,libcsv_core-7347f19c40cf3129.rlib,libbstr-2b29b0807dfc36b5.rlib,libregex_automata-31d378b01f1978af.rlib,libunicode_width-e6feeb9daa4fd470.rlib,libencode_unicode-588f67c203900f18.rlib,libterm-f03fd69e2dc66d8d.rlib,libdirs_next-74bf90b82bda9c8f.rlib,libdirs_sys_next-1d188591eb6d3549.rlib,librand_distr-f38e16b203df10e3.rlib,libnum_traits-193c8b0c20d13636.rlib,librand-c78cd1cdd82118d8.rlib,librand_chacha-26bf44f990740447.rlib,libppv_lite86-f1eaae57f9caf7a8.rlib,librand_core-3f71533ba8de91b4.rlib,libgetrandom-f6681438525d2794.rlib,libindicatif-f64128a0e9cec632.rlib,libconsole-842746238fd585d5.rlib,libterminal_size-0c12704b8124bf93.rlib,liblazy_static-af860367908b8176.rlib,libnumber_prefix-6b994bedec76f9db.rlib,libserde-f2f7236503f29a9e.rlib,libregex-21e1e5a1d0d55726.rlib,libaho_corasick-9ff068df0d2a0cfc.rlib,libregex_syntax-00b81cede0cdc0da.rlib,libclap-bb380cd5d698d0a1.rlib,libatty-ad4ba561e7cd5fa2.rlib,libstrsim-934c6b5db5b11ce4.rlib,libclap_lex-a96a2ebcac8b4156.rlib,libos_str_bytes-fb7825282e1fd80e.rlib,libtermcolor-214b0416d5f44404.rlib,libnoodles-79a3bb73bde86726.rlib,libnoodles_gff-ca8ea2eeab9dacff.rlib,libpercent_encoding-bf512ecf668f0e68.rlib,libnoodles_fastq-bdc60f0beb86361d.rlib,libnoodles_cram-5ee8ee39b758c462.rlib,libmd5-4d38bbb392abcfc6.rlib,libdigest-bd87a09edbf86ca6.rlib,libblock_buffer-f9f08486edcf0ca7.rlib,libcrypto_common-6d174c837c3631a0.rlib,libgeneric_array-c1730078a55eb32e.rlib,libtypenum-35cb3744b4a64b8e.rlib,libasync_compression-27172d8dc6b2f917.rlib,libxz2-50336ed4a42d829e.rlib,liblzma_sys-b3ead72eba91f39f.rlib,libbzip2-a26c791c9cb1c534.rlib,libbzip2_sys-8800d0b8d6946223.rlib,libnoodles_bam-d15d1c2f8a0e7e8b.rlib,libnoodles_sam-ff70ffb7d437ca40.rlib,libbitflags-dde12b0d7d495b50.rlib,liblexical_core-53509516061ff388.rlib,liblexical_write_float-5ff64d4fc992089e.rlib,liblexical_write_integer-0a06b4b5cfa72cfc.rlib,liblexical_parse_float-b60f21eb25dbeba6.rlib,liblexical_parse_integer-0029f6ad1af953dc.rlib,liblexical_util-69862a507e6b363d.rlib,libstatic_assertions-f0217ecdd817a834.rlib,libindexmap-a77f9b9634cddb94.rlib,libhashbrown-cae2cd0d9cc0a6cf.rlib,libnoodles_fasta-43f2f9eeb1d5c645.rlib,libnoodles_csi-31ace3e865457d85.rlib,libbit_vec-1484b09fcc589a29.rlib,libnoodles_core-c5dfcb50b010dc40.rlib,libnoodles_bgzf-68c42a1e5cd602ee.rlib,libflate2-46ffeabd71e15f5c.rlib,libminiz_oxide-1ed6cc5c63e3e0c7.rlib,libadler-8a8ce72c9fb247b6.rlib,libcrc32fast-e5de59621c1c9ea3.rlib,libcrossbeam_channel-d1891cafbf29e280.rlib,libcrossbeam_utils-4578a535090afdc1.rlib,libbyteorder-fb36fe721788ce00.rlib,libtokio_util-a3e70b1f9380cd20.rlib,libtracing-fdb43d90ea02a9ee.rlib,libcfg_if-3e7fc4e38d4a72b5.rlib,libtracing_core-c4195af3c8b8941d.rlib,libonce_cell-85b28529bf6cae43.rlib,libtokio-5acb8389c21a5eab.rlib,libnum_cpus-77cf0ec96b962139.rlib,liblibc-3eaea441ca43b1d1.rlib,libbytes-90fa2233ca6ac0df.rlib,libfutures-8657b7a83737734b.rlib,libfutures_executor-5d809466b8c6d006.rlib,libfutures_util-cdceba66efc1439b.rlib,libmemchr-34c06a26bc9e8129.rlib,libfutures_io-0c8ed8839545e670.rlib,libslab-b1e702ccf3e927a6.rlib,libfutures_channel-3911ec92bfc9d79b.rlib,libpin_project_lite-6df6c214457c8ca7.rlib,libfutures_sink-44ced47ba5cc2bd4.rlib,libfutures_task-9126102c29749340.rlib,libpin_utils-3860774ad9b215b5.rlib,libfutures_core-f5c602f8eba8fbac.rlib,libanyhow-2eafe57cf09d012b.rlib}.rlib" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,libcfg_if-*,liblibc-*,liballoc-*,librustc_std_workspace_core-*,libcore-*,libcompiler_builtins-*}.rlib" "-Wl,-Bdynamic" "-llzma" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-L" "/tmp/rustca462XV/raw-dylibs" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/target/debug/build/bzip2-sys-f4fad42a742c2219/out/lib" "-L" "/usr/lib/x86_64-linux-gnu" "-L" "/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/tmp/rustdoctestSFQ1Li/rust_out" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: collect2: fatal error: ld terminated with signal 9 [Killed] [INFO] [stdout] compilation terminated. [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 1 previous error [INFO] [stdout] [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] ---- src/utils/histogram.rs - utils::histogram (line 85) stdout ---- [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/tmp/rustcJIUWOm/symbols.o" "<2 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/{libngs-bf93129b75cf03bd.rlib,librust_lapper-1294cb2fb4b191d2.rlib,libnum_format-8e4cb8e345f3b7c2.rlib,libarrayvec-3617f28676f87902.rlib,libnodrop-48b37a631139088c.rlib,libitertools-81abc26392a6ebd3.rlib,libeither-a3c3165c89d9dfe8.rlib,libplotly-84f65f1a6aaffa1b.rlib,libserde_with-b235da31cc7525b9.rlib,liberased_serde-00347921093e96b5.rlib,libdyn_clone-4bf9241a5cd3dcfa.rlib,libaskama-9f64eece52a5405b.rlib,libaskama_shared-71fdbf77db0ba225.rlib,libtoml-66b96acdb1055a7d.rlib,libmime_guess-69518e25574ffaf4.rlib,libunicase-0a5560e076218c84.rlib,libsyn-8caaa7702bd8ccc5.rlib,libnom-7ff696981332af70.rlib,libmime-df56754a5ea019bb.rlib,libquote-fd9bcf9b8a112bec.rlib,libhumansize-77c6498259f554af.rlib,libserde_json-a3fbc409dc3f02bb.rlib,libitoa-16cfa8721381c1c3.rlib,libaskama_escape-34de53293195524f.rlib,libproc_macro2-285b9cf572459e9c.rlib,libunicode_ident-40d9fe3cc868d127.rlib}.rlib" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libproc_macro-*}.rlib" "/opt/rustwide/target/debug/deps/{libprettytable-2a16b1a1512904a7.rlib,libcsv-ec24af429660e573.rlib,libryu-038f6cdb33aa666f.rlib,libitoa-b1f590b0f223a482.rlib,libcsv_core-7347f19c40cf3129.rlib,libbstr-2b29b0807dfc36b5.rlib,libregex_automata-31d378b01f1978af.rlib,libunicode_width-e6feeb9daa4fd470.rlib,libencode_unicode-588f67c203900f18.rlib,libterm-f03fd69e2dc66d8d.rlib,libdirs_next-74bf90b82bda9c8f.rlib,libdirs_sys_next-1d188591eb6d3549.rlib,librand_distr-f38e16b203df10e3.rlib,libnum_traits-193c8b0c20d13636.rlib,librand-c78cd1cdd82118d8.rlib,librand_chacha-26bf44f990740447.rlib,libppv_lite86-f1eaae57f9caf7a8.rlib,librand_core-3f71533ba8de91b4.rlib,libgetrandom-f6681438525d2794.rlib,libindicatif-f64128a0e9cec632.rlib,libconsole-842746238fd585d5.rlib,libterminal_size-0c12704b8124bf93.rlib,liblazy_static-af860367908b8176.rlib,libnumber_prefix-6b994bedec76f9db.rlib,libserde-f2f7236503f29a9e.rlib,libregex-21e1e5a1d0d55726.rlib,libaho_corasick-9ff068df0d2a0cfc.rlib,libregex_syntax-00b81cede0cdc0da.rlib,libclap-bb380cd5d698d0a1.rlib,libatty-ad4ba561e7cd5fa2.rlib,libstrsim-934c6b5db5b11ce4.rlib,libclap_lex-a96a2ebcac8b4156.rlib,libos_str_bytes-fb7825282e1fd80e.rlib,libtermcolor-214b0416d5f44404.rlib,libnoodles-79a3bb73bde86726.rlib,libnoodles_gff-ca8ea2eeab9dacff.rlib,libpercent_encoding-bf512ecf668f0e68.rlib,libnoodles_fastq-bdc60f0beb86361d.rlib,libnoodles_cram-5ee8ee39b758c462.rlib,libmd5-4d38bbb392abcfc6.rlib,libdigest-bd87a09edbf86ca6.rlib,libblock_buffer-f9f08486edcf0ca7.rlib,libcrypto_common-6d174c837c3631a0.rlib,libgeneric_array-c1730078a55eb32e.rlib,libtypenum-35cb3744b4a64b8e.rlib,libasync_compression-27172d8dc6b2f917.rlib,libxz2-50336ed4a42d829e.rlib,liblzma_sys-b3ead72eba91f39f.rlib,libbzip2-a26c791c9cb1c534.rlib,libbzip2_sys-8800d0b8d6946223.rlib,libnoodles_bam-d15d1c2f8a0e7e8b.rlib,libnoodles_sam-ff70ffb7d437ca40.rlib,libbitflags-dde12b0d7d495b50.rlib,liblexical_core-53509516061ff388.rlib,liblexical_write_float-5ff64d4fc992089e.rlib,liblexical_write_integer-0a06b4b5cfa72cfc.rlib,liblexical_parse_float-b60f21eb25dbeba6.rlib,liblexical_parse_integer-0029f6ad1af953dc.rlib,liblexical_util-69862a507e6b363d.rlib,libstatic_assertions-f0217ecdd817a834.rlib,libindexmap-a77f9b9634cddb94.rlib,libhashbrown-cae2cd0d9cc0a6cf.rlib,libnoodles_fasta-43f2f9eeb1d5c645.rlib,libnoodles_csi-31ace3e865457d85.rlib,libbit_vec-1484b09fcc589a29.rlib,libnoodles_core-c5dfcb50b010dc40.rlib,libnoodles_bgzf-68c42a1e5cd602ee.rlib,libflate2-46ffeabd71e15f5c.rlib,libminiz_oxide-1ed6cc5c63e3e0c7.rlib,libadler-8a8ce72c9fb247b6.rlib,libcrc32fast-e5de59621c1c9ea3.rlib,libcrossbeam_channel-d1891cafbf29e280.rlib,libcrossbeam_utils-4578a535090afdc1.rlib,libbyteorder-fb36fe721788ce00.rlib,libtokio_util-a3e70b1f9380cd20.rlib,libtracing-fdb43d90ea02a9ee.rlib,libcfg_if-3e7fc4e38d4a72b5.rlib,libtracing_core-c4195af3c8b8941d.rlib,libonce_cell-85b28529bf6cae43.rlib,libtokio-5acb8389c21a5eab.rlib,libnum_cpus-77cf0ec96b962139.rlib,liblibc-3eaea441ca43b1d1.rlib,libbytes-90fa2233ca6ac0df.rlib,libfutures-8657b7a83737734b.rlib,libfutures_executor-5d809466b8c6d006.rlib,libfutures_util-cdceba66efc1439b.rlib,libmemchr-34c06a26bc9e8129.rlib,libfutures_io-0c8ed8839545e670.rlib,libslab-b1e702ccf3e927a6.rlib,libfutures_channel-3911ec92bfc9d79b.rlib,libpin_project_lite-6df6c214457c8ca7.rlib,libfutures_sink-44ced47ba5cc2bd4.rlib,libfutures_task-9126102c29749340.rlib,libpin_utils-3860774ad9b215b5.rlib,libfutures_core-f5c602f8eba8fbac.rlib,libanyhow-2eafe57cf09d012b.rlib}.rlib" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,libcfg_if-*,liblibc-*,liballoc-*,librustc_std_workspace_core-*,libcore-*,libcompiler_builtins-*}.rlib" "-Wl,-Bdynamic" "-llzma" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-L" "/tmp/rustcJIUWOm/raw-dylibs" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/target/debug/build/bzip2-sys-f4fad42a742c2219/out/lib" "-L" "/usr/lib/x86_64-linux-gnu" "-L" "/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/tmp/rustdoctestf5BxCr/rust_out" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: collect2: fatal error: ld terminated with signal 9 [Killed] [INFO] [stdout] compilation terminated. [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 1 previous error [INFO] [stdout] [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] ---- src/utils/histogram.rs - utils::histogram (line 98) stdout ---- [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/tmp/rustcOA8GP0/symbols.o" "<2 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/{libngs-bf93129b75cf03bd.rlib,librust_lapper-1294cb2fb4b191d2.rlib,libnum_format-8e4cb8e345f3b7c2.rlib,libarrayvec-3617f28676f87902.rlib,libnodrop-48b37a631139088c.rlib,libitertools-81abc26392a6ebd3.rlib,libeither-a3c3165c89d9dfe8.rlib,libplotly-84f65f1a6aaffa1b.rlib,libserde_with-b235da31cc7525b9.rlib,liberased_serde-00347921093e96b5.rlib,libdyn_clone-4bf9241a5cd3dcfa.rlib,libaskama-9f64eece52a5405b.rlib,libaskama_shared-71fdbf77db0ba225.rlib,libtoml-66b96acdb1055a7d.rlib,libmime_guess-69518e25574ffaf4.rlib,libunicase-0a5560e076218c84.rlib,libsyn-8caaa7702bd8ccc5.rlib,libnom-7ff696981332af70.rlib,libmime-df56754a5ea019bb.rlib,libquote-fd9bcf9b8a112bec.rlib,libhumansize-77c6498259f554af.rlib,libserde_json-a3fbc409dc3f02bb.rlib,libitoa-16cfa8721381c1c3.rlib,libaskama_escape-34de53293195524f.rlib,libproc_macro2-285b9cf572459e9c.rlib,libunicode_ident-40d9fe3cc868d127.rlib}.rlib" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libproc_macro-*}.rlib" "/opt/rustwide/target/debug/deps/{libprettytable-2a16b1a1512904a7.rlib,libcsv-ec24af429660e573.rlib,libryu-038f6cdb33aa666f.rlib,libitoa-b1f590b0f223a482.rlib,libcsv_core-7347f19c40cf3129.rlib,libbstr-2b29b0807dfc36b5.rlib,libregex_automata-31d378b01f1978af.rlib,libunicode_width-e6feeb9daa4fd470.rlib,libencode_unicode-588f67c203900f18.rlib,libterm-f03fd69e2dc66d8d.rlib,libdirs_next-74bf90b82bda9c8f.rlib,libdirs_sys_next-1d188591eb6d3549.rlib,librand_distr-f38e16b203df10e3.rlib,libnum_traits-193c8b0c20d13636.rlib,librand-c78cd1cdd82118d8.rlib,librand_chacha-26bf44f990740447.rlib,libppv_lite86-f1eaae57f9caf7a8.rlib,librand_core-3f71533ba8de91b4.rlib,libgetrandom-f6681438525d2794.rlib,libindicatif-f64128a0e9cec632.rlib,libconsole-842746238fd585d5.rlib,libterminal_size-0c12704b8124bf93.rlib,liblazy_static-af860367908b8176.rlib,libnumber_prefix-6b994bedec76f9db.rlib,libserde-f2f7236503f29a9e.rlib,libregex-21e1e5a1d0d55726.rlib,libaho_corasick-9ff068df0d2a0cfc.rlib,libregex_syntax-00b81cede0cdc0da.rlib,libclap-bb380cd5d698d0a1.rlib,libatty-ad4ba561e7cd5fa2.rlib,libstrsim-934c6b5db5b11ce4.rlib,libclap_lex-a96a2ebcac8b4156.rlib,libos_str_bytes-fb7825282e1fd80e.rlib,libtermcolor-214b0416d5f44404.rlib,libnoodles-79a3bb73bde86726.rlib,libnoodles_gff-ca8ea2eeab9dacff.rlib,libpercent_encoding-bf512ecf668f0e68.rlib,libnoodles_fastq-bdc60f0beb86361d.rlib,libnoodles_cram-5ee8ee39b758c462.rlib,libmd5-4d38bbb392abcfc6.rlib,libdigest-bd87a09edbf86ca6.rlib,libblock_buffer-f9f08486edcf0ca7.rlib,libcrypto_common-6d174c837c3631a0.rlib,libgeneric_array-c1730078a55eb32e.rlib,libtypenum-35cb3744b4a64b8e.rlib,libasync_compression-27172d8dc6b2f917.rlib,libxz2-50336ed4a42d829e.rlib,liblzma_sys-b3ead72eba91f39f.rlib,libbzip2-a26c791c9cb1c534.rlib,libbzip2_sys-8800d0b8d6946223.rlib,libnoodles_bam-d15d1c2f8a0e7e8b.rlib,libnoodles_sam-ff70ffb7d437ca40.rlib,libbitflags-dde12b0d7d495b50.rlib,liblexical_core-53509516061ff388.rlib,liblexical_write_float-5ff64d4fc992089e.rlib,liblexical_write_integer-0a06b4b5cfa72cfc.rlib,liblexical_parse_float-b60f21eb25dbeba6.rlib,liblexical_parse_integer-0029f6ad1af953dc.rlib,liblexical_util-69862a507e6b363d.rlib,libstatic_assertions-f0217ecdd817a834.rlib,libindexmap-a77f9b9634cddb94.rlib,libhashbrown-cae2cd0d9cc0a6cf.rlib,libnoodles_fasta-43f2f9eeb1d5c645.rlib,libnoodles_csi-31ace3e865457d85.rlib,libbit_vec-1484b09fcc589a29.rlib,libnoodles_core-c5dfcb50b010dc40.rlib,libnoodles_bgzf-68c42a1e5cd602ee.rlib,libflate2-46ffeabd71e15f5c.rlib,libminiz_oxide-1ed6cc5c63e3e0c7.rlib,libadler-8a8ce72c9fb247b6.rlib,libcrc32fast-e5de59621c1c9ea3.rlib,libcrossbeam_channel-d1891cafbf29e280.rlib,libcrossbeam_utils-4578a535090afdc1.rlib,libbyteorder-fb36fe721788ce00.rlib,libtokio_util-a3e70b1f9380cd20.rlib,libtracing-fdb43d90ea02a9ee.rlib,libcfg_if-3e7fc4e38d4a72b5.rlib,libtracing_core-c4195af3c8b8941d.rlib,libonce_cell-85b28529bf6cae43.rlib,libtokio-5acb8389c21a5eab.rlib,libnum_cpus-77cf0ec96b962139.rlib,liblibc-3eaea441ca43b1d1.rlib,libbytes-90fa2233ca6ac0df.rlib,libfutures-8657b7a83737734b.rlib,libfutures_executor-5d809466b8c6d006.rlib,libfutures_util-cdceba66efc1439b.rlib,libmemchr-34c06a26bc9e8129.rlib,libfutures_io-0c8ed8839545e670.rlib,libslab-b1e702ccf3e927a6.rlib,libfutures_channel-3911ec92bfc9d79b.rlib,libpin_project_lite-6df6c214457c8ca7.rlib,libfutures_sink-44ced47ba5cc2bd4.rlib,libfutures_task-9126102c29749340.rlib,libpin_utils-3860774ad9b215b5.rlib,libfutures_core-f5c602f8eba8fbac.rlib,libanyhow-2eafe57cf09d012b.rlib}.rlib" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,libcfg_if-*,liblibc-*,liballoc-*,librustc_std_workspace_core-*,libcore-*,libcompiler_builtins-*}.rlib" "-Wl,-Bdynamic" "-llzma" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-L" "/tmp/rustcOA8GP0/raw-dylibs" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/target/debug/build/bzip2-sys-f4fad42a742c2219/out/lib" "-L" "/usr/lib/x86_64-linux-gnu" "-L" "/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/tmp/rustdoctestXmM4p7/rust_out" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: collect2: fatal error: ld terminated with signal 9 [Killed] [INFO] [stdout] compilation terminated. [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 1 previous error [INFO] [stdout] [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] ---- src/utils/histogram.rs - utils::histogram (line 72) stdout ---- [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/tmp/rustc50Qsaz/symbols.o" "<2 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/{libngs-bf93129b75cf03bd.rlib,librust_lapper-1294cb2fb4b191d2.rlib,libnum_format-8e4cb8e345f3b7c2.rlib,libarrayvec-3617f28676f87902.rlib,libnodrop-48b37a631139088c.rlib,libitertools-81abc26392a6ebd3.rlib,libeither-a3c3165c89d9dfe8.rlib,libplotly-84f65f1a6aaffa1b.rlib,libserde_with-b235da31cc7525b9.rlib,liberased_serde-00347921093e96b5.rlib,libdyn_clone-4bf9241a5cd3dcfa.rlib,libaskama-9f64eece52a5405b.rlib,libaskama_shared-71fdbf77db0ba225.rlib,libtoml-66b96acdb1055a7d.rlib,libmime_guess-69518e25574ffaf4.rlib,libunicase-0a5560e076218c84.rlib,libsyn-8caaa7702bd8ccc5.rlib,libnom-7ff696981332af70.rlib,libmime-df56754a5ea019bb.rlib,libquote-fd9bcf9b8a112bec.rlib,libhumansize-77c6498259f554af.rlib,libserde_json-a3fbc409dc3f02bb.rlib,libitoa-16cfa8721381c1c3.rlib,libaskama_escape-34de53293195524f.rlib,libproc_macro2-285b9cf572459e9c.rlib,libunicode_ident-40d9fe3cc868d127.rlib}.rlib" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libproc_macro-*}.rlib" "/opt/rustwide/target/debug/deps/{libprettytable-2a16b1a1512904a7.rlib,libcsv-ec24af429660e573.rlib,libryu-038f6cdb33aa666f.rlib,libitoa-b1f590b0f223a482.rlib,libcsv_core-7347f19c40cf3129.rlib,libbstr-2b29b0807dfc36b5.rlib,libregex_automata-31d378b01f1978af.rlib,libunicode_width-e6feeb9daa4fd470.rlib,libencode_unicode-588f67c203900f18.rlib,libterm-f03fd69e2dc66d8d.rlib,libdirs_next-74bf90b82bda9c8f.rlib,libdirs_sys_next-1d188591eb6d3549.rlib,librand_distr-f38e16b203df10e3.rlib,libnum_traits-193c8b0c20d13636.rlib,librand-c78cd1cdd82118d8.rlib,librand_chacha-26bf44f990740447.rlib,libppv_lite86-f1eaae57f9caf7a8.rlib,librand_core-3f71533ba8de91b4.rlib,libgetrandom-f6681438525d2794.rlib,libindicatif-f64128a0e9cec632.rlib,libconsole-842746238fd585d5.rlib,libterminal_size-0c12704b8124bf93.rlib,liblazy_static-af860367908b8176.rlib,libnumber_prefix-6b994bedec76f9db.rlib,libserde-f2f7236503f29a9e.rlib,libregex-21e1e5a1d0d55726.rlib,libaho_corasick-9ff068df0d2a0cfc.rlib,libregex_syntax-00b81cede0cdc0da.rlib,libclap-bb380cd5d698d0a1.rlib,libatty-ad4ba561e7cd5fa2.rlib,libstrsim-934c6b5db5b11ce4.rlib,libclap_lex-a96a2ebcac8b4156.rlib,libos_str_bytes-fb7825282e1fd80e.rlib,libtermcolor-214b0416d5f44404.rlib,libnoodles-79a3bb73bde86726.rlib,libnoodles_gff-ca8ea2eeab9dacff.rlib,libpercent_encoding-bf512ecf668f0e68.rlib,libnoodles_fastq-bdc60f0beb86361d.rlib,libnoodles_cram-5ee8ee39b758c462.rlib,libmd5-4d38bbb392abcfc6.rlib,libdigest-bd87a09edbf86ca6.rlib,libblock_buffer-f9f08486edcf0ca7.rlib,libcrypto_common-6d174c837c3631a0.rlib,libgeneric_array-c1730078a55eb32e.rlib,libtypenum-35cb3744b4a64b8e.rlib,libasync_compression-27172d8dc6b2f917.rlib,libxz2-50336ed4a42d829e.rlib,liblzma_sys-b3ead72eba91f39f.rlib,libbzip2-a26c791c9cb1c534.rlib,libbzip2_sys-8800d0b8d6946223.rlib,libnoodles_bam-d15d1c2f8a0e7e8b.rlib,libnoodles_sam-ff70ffb7d437ca40.rlib,libbitflags-dde12b0d7d495b50.rlib,liblexical_core-53509516061ff388.rlib,liblexical_write_float-5ff64d4fc992089e.rlib,liblexical_write_integer-0a06b4b5cfa72cfc.rlib,liblexical_parse_float-b60f21eb25dbeba6.rlib,liblexical_parse_integer-0029f6ad1af953dc.rlib,liblexical_util-69862a507e6b363d.rlib,libstatic_assertions-f0217ecdd817a834.rlib,libindexmap-a77f9b9634cddb94.rlib,libhashbrown-cae2cd0d9cc0a6cf.rlib,libnoodles_fasta-43f2f9eeb1d5c645.rlib,libnoodles_csi-31ace3e865457d85.rlib,libbit_vec-1484b09fcc589a29.rlib,libnoodles_core-c5dfcb50b010dc40.rlib,libnoodles_bgzf-68c42a1e5cd602ee.rlib,libflate2-46ffeabd71e15f5c.rlib,libminiz_oxide-1ed6cc5c63e3e0c7.rlib,libadler-8a8ce72c9fb247b6.rlib,libcrc32fast-e5de59621c1c9ea3.rlib,libcrossbeam_channel-d1891cafbf29e280.rlib,libcrossbeam_utils-4578a535090afdc1.rlib,libbyteorder-fb36fe721788ce00.rlib,libtokio_util-a3e70b1f9380cd20.rlib,libtracing-fdb43d90ea02a9ee.rlib,libcfg_if-3e7fc4e38d4a72b5.rlib,libtracing_core-c4195af3c8b8941d.rlib,libonce_cell-85b28529bf6cae43.rlib,libtokio-5acb8389c21a5eab.rlib,libnum_cpus-77cf0ec96b962139.rlib,liblibc-3eaea441ca43b1d1.rlib,libbytes-90fa2233ca6ac0df.rlib,libfutures-8657b7a83737734b.rlib,libfutures_executor-5d809466b8c6d006.rlib,libfutures_util-cdceba66efc1439b.rlib,libmemchr-34c06a26bc9e8129.rlib,libfutures_io-0c8ed8839545e670.rlib,libslab-b1e702ccf3e927a6.rlib,libfutures_channel-3911ec92bfc9d79b.rlib,libpin_project_lite-6df6c214457c8ca7.rlib,libfutures_sink-44ced47ba5cc2bd4.rlib,libfutures_task-9126102c29749340.rlib,libpin_utils-3860774ad9b215b5.rlib,libfutures_core-f5c602f8eba8fbac.rlib,libanyhow-2eafe57cf09d012b.rlib}.rlib" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,libcfg_if-*,liblibc-*,liballoc-*,librustc_std_workspace_core-*,libcore-*,libcompiler_builtins-*}.rlib" "-Wl,-Bdynamic" "-llzma" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-L" "/tmp/rustc50Qsaz/raw-dylibs" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/target/debug/build/bzip2-sys-f4fad42a742c2219/out/lib" "-L" "/usr/lib/x86_64-linux-gnu" "-L" "/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/tmp/rustdoctestNP8h9U/rust_out" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: collect2: fatal error: ld terminated with signal 9 [Killed] [INFO] [stdout] compilation terminated. [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 1 previous error [INFO] [stdout] [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] ---- src/utils/pathbuf.rs - utils::pathbuf::AppendExtension::append_extension (line 45) stdout ---- [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/tmp/rustcnNJdDd/symbols.o" "<2 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/{libngs-bf93129b75cf03bd.rlib,librust_lapper-1294cb2fb4b191d2.rlib,libnum_format-8e4cb8e345f3b7c2.rlib,libarrayvec-3617f28676f87902.rlib,libnodrop-48b37a631139088c.rlib,libitertools-81abc26392a6ebd3.rlib,libeither-a3c3165c89d9dfe8.rlib,libplotly-84f65f1a6aaffa1b.rlib,libserde_with-b235da31cc7525b9.rlib,liberased_serde-00347921093e96b5.rlib,libdyn_clone-4bf9241a5cd3dcfa.rlib,libaskama-9f64eece52a5405b.rlib,libaskama_shared-71fdbf77db0ba225.rlib,libtoml-66b96acdb1055a7d.rlib,libmime_guess-69518e25574ffaf4.rlib,libunicase-0a5560e076218c84.rlib,libsyn-8caaa7702bd8ccc5.rlib,libnom-7ff696981332af70.rlib,libmime-df56754a5ea019bb.rlib,libquote-fd9bcf9b8a112bec.rlib,libhumansize-77c6498259f554af.rlib,libserde_json-a3fbc409dc3f02bb.rlib,libitoa-16cfa8721381c1c3.rlib,libaskama_escape-34de53293195524f.rlib,libproc_macro2-285b9cf572459e9c.rlib,libunicode_ident-40d9fe3cc868d127.rlib}.rlib" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libproc_macro-*}.rlib" "/opt/rustwide/target/debug/deps/{libprettytable-2a16b1a1512904a7.rlib,libcsv-ec24af429660e573.rlib,libryu-038f6cdb33aa666f.rlib,libitoa-b1f590b0f223a482.rlib,libcsv_core-7347f19c40cf3129.rlib,libbstr-2b29b0807dfc36b5.rlib,libregex_automata-31d378b01f1978af.rlib,libunicode_width-e6feeb9daa4fd470.rlib,libencode_unicode-588f67c203900f18.rlib,libterm-f03fd69e2dc66d8d.rlib,libdirs_next-74bf90b82bda9c8f.rlib,libdirs_sys_next-1d188591eb6d3549.rlib,librand_distr-f38e16b203df10e3.rlib,libnum_traits-193c8b0c20d13636.rlib,librand-c78cd1cdd82118d8.rlib,librand_chacha-26bf44f990740447.rlib,libppv_lite86-f1eaae57f9caf7a8.rlib,librand_core-3f71533ba8de91b4.rlib,libgetrandom-f6681438525d2794.rlib,libindicatif-f64128a0e9cec632.rlib,libconsole-842746238fd585d5.rlib,libterminal_size-0c12704b8124bf93.rlib,liblazy_static-af860367908b8176.rlib,libnumber_prefix-6b994bedec76f9db.rlib,libserde-f2f7236503f29a9e.rlib,libregex-21e1e5a1d0d55726.rlib,libaho_corasick-9ff068df0d2a0cfc.rlib,libregex_syntax-00b81cede0cdc0da.rlib,libclap-bb380cd5d698d0a1.rlib,libatty-ad4ba561e7cd5fa2.rlib,libstrsim-934c6b5db5b11ce4.rlib,libclap_lex-a96a2ebcac8b4156.rlib,libos_str_bytes-fb7825282e1fd80e.rlib,libtermcolor-214b0416d5f44404.rlib,libnoodles-79a3bb73bde86726.rlib,libnoodles_gff-ca8ea2eeab9dacff.rlib,libpercent_encoding-bf512ecf668f0e68.rlib,libnoodles_fastq-bdc60f0beb86361d.rlib,libnoodles_cram-5ee8ee39b758c462.rlib,libmd5-4d38bbb392abcfc6.rlib,libdigest-bd87a09edbf86ca6.rlib,libblock_buffer-f9f08486edcf0ca7.rlib,libcrypto_common-6d174c837c3631a0.rlib,libgeneric_array-c1730078a55eb32e.rlib,libtypenum-35cb3744b4a64b8e.rlib,libasync_compression-27172d8dc6b2f917.rlib,libxz2-50336ed4a42d829e.rlib,liblzma_sys-b3ead72eba91f39f.rlib,libbzip2-a26c791c9cb1c534.rlib,libbzip2_sys-8800d0b8d6946223.rlib,libnoodles_bam-d15d1c2f8a0e7e8b.rlib,libnoodles_sam-ff70ffb7d437ca40.rlib,libbitflags-dde12b0d7d495b50.rlib,liblexical_core-53509516061ff388.rlib,liblexical_write_float-5ff64d4fc992089e.rlib,liblexical_write_integer-0a06b4b5cfa72cfc.rlib,liblexical_parse_float-b60f21eb25dbeba6.rlib,liblexical_parse_integer-0029f6ad1af953dc.rlib,liblexical_util-69862a507e6b363d.rlib,libstatic_assertions-f0217ecdd817a834.rlib,libindexmap-a77f9b9634cddb94.rlib,libhashbrown-cae2cd0d9cc0a6cf.rlib,libnoodles_fasta-43f2f9eeb1d5c645.rlib,libnoodles_csi-31ace3e865457d85.rlib,libbit_vec-1484b09fcc589a29.rlib,libnoodles_core-c5dfcb50b010dc40.rlib,libnoodles_bgzf-68c42a1e5cd602ee.rlib,libflate2-46ffeabd71e15f5c.rlib,libminiz_oxide-1ed6cc5c63e3e0c7.rlib,libadler-8a8ce72c9fb247b6.rlib,libcrc32fast-e5de59621c1c9ea3.rlib,libcrossbeam_channel-d1891cafbf29e280.rlib,libcrossbeam_utils-4578a535090afdc1.rlib,libbyteorder-fb36fe721788ce00.rlib,libtokio_util-a3e70b1f9380cd20.rlib,libtracing-fdb43d90ea02a9ee.rlib,libcfg_if-3e7fc4e38d4a72b5.rlib,libtracing_core-c4195af3c8b8941d.rlib,libonce_cell-85b28529bf6cae43.rlib,libtokio-5acb8389c21a5eab.rlib,libnum_cpus-77cf0ec96b962139.rlib,liblibc-3eaea441ca43b1d1.rlib,libbytes-90fa2233ca6ac0df.rlib,libfutures-8657b7a83737734b.rlib,libfutures_executor-5d809466b8c6d006.rlib,libfutures_util-cdceba66efc1439b.rlib,libmemchr-34c06a26bc9e8129.rlib,libfutures_io-0c8ed8839545e670.rlib,libslab-b1e702ccf3e927a6.rlib,libfutures_channel-3911ec92bfc9d79b.rlib,libpin_project_lite-6df6c214457c8ca7.rlib,libfutures_sink-44ced47ba5cc2bd4.rlib,libfutures_task-9126102c29749340.rlib,libpin_utils-3860774ad9b215b5.rlib,libfutures_core-f5c602f8eba8fbac.rlib,libanyhow-2eafe57cf09d012b.rlib}.rlib" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,libcfg_if-*,liblibc-*,liballoc-*,librustc_std_workspace_core-*,libcore-*,libcompiler_builtins-*}.rlib" "-Wl,-Bdynamic" "-llzma" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-L" "/tmp/rustcnNJdDd/raw-dylibs" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/target/debug/build/bzip2-sys-f4fad42a742c2219/out/lib" "-L" "/usr/lib/x86_64-linux-gnu" "-L" "/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/tmp/rustdoctestx83Qeo/rust_out" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: collect2: fatal error: ld terminated with signal 9 [Killed] [INFO] [stdout] compilation terminated. [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 1 previous error [INFO] [stdout] [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] ---- src/utils/genome.rs - utils::genome::ReferenceGenome::triplet_id (line 277) stdout ---- [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/tmp/rustccjFrne/symbols.o" "<2 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/{libngs-bf93129b75cf03bd.rlib,librust_lapper-1294cb2fb4b191d2.rlib,libnum_format-8e4cb8e345f3b7c2.rlib,libarrayvec-3617f28676f87902.rlib,libnodrop-48b37a631139088c.rlib,libitertools-81abc26392a6ebd3.rlib,libeither-a3c3165c89d9dfe8.rlib,libplotly-84f65f1a6aaffa1b.rlib,libserde_with-b235da31cc7525b9.rlib,liberased_serde-00347921093e96b5.rlib,libdyn_clone-4bf9241a5cd3dcfa.rlib,libaskama-9f64eece52a5405b.rlib,libaskama_shared-71fdbf77db0ba225.rlib,libtoml-66b96acdb1055a7d.rlib,libmime_guess-69518e25574ffaf4.rlib,libunicase-0a5560e076218c84.rlib,libsyn-8caaa7702bd8ccc5.rlib,libnom-7ff696981332af70.rlib,libmime-df56754a5ea019bb.rlib,libquote-fd9bcf9b8a112bec.rlib,libhumansize-77c6498259f554af.rlib,libserde_json-a3fbc409dc3f02bb.rlib,libitoa-16cfa8721381c1c3.rlib,libaskama_escape-34de53293195524f.rlib,libproc_macro2-285b9cf572459e9c.rlib,libunicode_ident-40d9fe3cc868d127.rlib}.rlib" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libproc_macro-*}.rlib" 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"/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,libcfg_if-*,liblibc-*,liballoc-*,librustc_std_workspace_core-*,libcore-*,libcompiler_builtins-*}.rlib" "-Wl,-Bdynamic" "-llzma" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-L" "/tmp/rustccjFrne/raw-dylibs" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/target/debug/build/bzip2-sys-f4fad42a742c2219/out/lib" "-L" "/usr/lib/x86_64-linux-gnu" "-L" "/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/tmp/rustdoctestC7dgjY/rust_out" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: collect2: fatal error: ld terminated with signal 9 [Killed] [INFO] [stdout] compilation terminated. [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 1 previous error [INFO] [stdout] [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] src/generate/utils.rs - generate::utils::compliment (line 90) [INFO] [stdout] src/utils/genome.rs - utils::genome::ReferenceGenome::triplet_id (line 277) [INFO] [stdout] src/utils/histogram.rs - utils::histogram (line 60) [INFO] [stdout] src/utils/histogram.rs - utils::histogram (line 72) [INFO] [stdout] src/utils/histogram.rs - utils::histogram (line 85) [INFO] [stdout] src/utils/histogram.rs - utils::histogram (line 98) [INFO] [stdout] src/utils/pathbuf.rs - utils::pathbuf::AppendExtension::append_extension (line 45) [INFO] [stdout] [INFO] [stdout] test result: FAILED. 3 passed; 7 failed; 0 ignored; 0 measured; 0 filtered out; finished in 7.59s [INFO] [stdout] [INFO] [stderr] error: doctest failed, to rerun pass `--doc` [INFO] running `Command { std: "docker" "inspect" "384e1c76e06bc41b254f615f17d6afaa11c0bbf3f0ad3bb49428f5575589fb6d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "384e1c76e06bc41b254f615f17d6afaa11c0bbf3f0ad3bb49428f5575589fb6d", kill_on_drop: false }` [INFO] [stdout] 384e1c76e06bc41b254f615f17d6afaa11c0bbf3f0ad3bb49428f5575589fb6d