[INFO] cloning repository https://github.com/frubino/bio-rascal [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/frubino/bio-rascal" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ffrubino%2Fbio-rascal", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ffrubino%2Fbio-rascal'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 8dd5505939c321fef207d4e9bda12e18af54f52a [INFO] testing frubino/bio-rascal against beta-2025-04-13 for beta-1.87-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ffrubino%2Fbio-rascal" "/workspace/builds/worker-7-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-7-tc2/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/frubino/bio-rascal on toolchain beta-2025-04-13 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-04-13" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/frubino/bio-rascal [INFO] finished tweaking git repo https://github.com/frubino/bio-rascal [INFO] tweaked toml for git repo https://github.com/frubino/bio-rascal written to /workspace/builds/worker-7-tc2/source/Cargo.toml [INFO] crate git repo https://github.com/frubino/bio-rascal already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-04-13" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded uuid-macro-internal v1.2.2 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0b074c097205a61b89e8ad263052f976b2b332c4dc5f02aef1fe52501660d6e" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-04-13" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] e04cdcce9c90dfd2d77a52f04ccdae6905d96556ed4051c0e08d0fdb16b0cbb6 [INFO] running `Command { std: "docker" "start" "-a" "e04cdcce9c90dfd2d77a52f04ccdae6905d96556ed4051c0e08d0fdb16b0cbb6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "e04cdcce9c90dfd2d77a52f04ccdae6905d96556ed4051c0e08d0fdb16b0cbb6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e04cdcce9c90dfd2d77a52f04ccdae6905d96556ed4051c0e08d0fdb16b0cbb6", kill_on_drop: false }` [INFO] [stdout] e04cdcce9c90dfd2d77a52f04ccdae6905d96556ed4051c0e08d0fdb16b0cbb6 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0b074c097205a61b89e8ad263052f976b2b332c4dc5f02aef1fe52501660d6e" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-04-13" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 9aca245ac9bc41deaa0a1b641c552eeea25ea10ba16f54ea16cbc3de8d7ebfb4 [INFO] running `Command { std: "docker" "start" "-a" "9aca245ac9bc41deaa0a1b641c552eeea25ea10ba16f54ea16cbc3de8d7ebfb4", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.49 [INFO] [stderr] Compiling unicode-ident v1.0.6 [INFO] [stderr] Compiling quote v1.0.23 [INFO] [stderr] Compiling syn v1.0.107 [INFO] [stderr] Compiling libc v0.2.139 [INFO] [stderr] Compiling serde_derive v1.0.152 [INFO] [stderr] Compiling serde v1.0.152 [INFO] [stderr] Compiling siphasher v0.3.10 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling phf_shared v0.11.1 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling crc32fast v1.3.2 [INFO] [stderr] Compiling serde_json v1.0.91 [INFO] [stderr] Compiling adler v1.0.2 [INFO] [stderr] Compiling anyhow v1.0.68 [INFO] [stderr] Compiling log v0.4.17 [INFO] [stderr] Compiling miniz_oxide v0.6.2 [INFO] [stderr] Compiling itoa v1.0.5 [INFO] [stderr] Compiling ryu v1.0.12 [INFO] [stderr] Compiling time-core v0.1.0 [INFO] [stderr] Compiling urlencoding v2.1.2 [INFO] [stderr] Compiling phf_generator v0.11.1 [INFO] [stderr] Compiling flate2 v1.0.25 [INFO] [stderr] Compiling getrandom v0.2.8 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling uuid-macro-internal v1.2.2 [INFO] [stderr] Compiling phf_macros v0.11.1 [INFO] [stderr] Compiling phf v0.11.1 [INFO] [stderr] Compiling uuid v1.2.2 [INFO] [stderr] Compiling time v0.3.17 [INFO] [stderr] Compiling bio_rascal v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `log::info` [INFO] [stdout] --> src/samtools.rs:5:5 [INFO] [stdout] | [INFO] [stdout] 5 | use log::info; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `taxon` [INFO] [stdout] --> src/taxon.rs:182:36 [INFO] [stdout] | [INFO] [stdout] 182 | pub fn get_ranked_taxon(&self, taxon: u32, rank: &Rank) -> &Taxon { [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_taxon` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `rank` [INFO] [stdout] --> src/taxon.rs:182:48 [INFO] [stdout] | [INFO] [stdout] 182 | pub fn get_ranked_taxon(&self, taxon: u32, rank: &Rank) -> &Taxon { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_rank` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/taxon.rs:225:17 [INFO] [stdout] | [INFO] [stdout] 225 | let mut node = match self.nodes.get_mut(&taxon_id) { [INFO] [stdout] | ----^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 9.30s [INFO] running `Command { std: "docker" "inspect" "9aca245ac9bc41deaa0a1b641c552eeea25ea10ba16f54ea16cbc3de8d7ebfb4", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "9aca245ac9bc41deaa0a1b641c552eeea25ea10ba16f54ea16cbc3de8d7ebfb4", kill_on_drop: false }` [INFO] [stdout] 9aca245ac9bc41deaa0a1b641c552eeea25ea10ba16f54ea16cbc3de8d7ebfb4 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0b074c097205a61b89e8ad263052f976b2b332c4dc5f02aef1fe52501660d6e" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-04-13" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] cfa1c4a293276f03601c2f13b03e8cebcf9aa43fceee925dd46e139c0f50a76f [INFO] running `Command { std: "docker" "start" "-a" "cfa1c4a293276f03601c2f13b03e8cebcf9aa43fceee925dd46e139c0f50a76f", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.139 [INFO] [stderr] Compiling crossbeam-utils v0.8.14 [INFO] [stderr] Compiling memoffset v0.7.1 [INFO] [stderr] Compiling crossbeam-epoch v0.9.13 [INFO] [stderr] Compiling memchr v2.5.0 [INFO] [stderr] Compiling num-traits v0.2.15 [INFO] [stderr] Compiling either v1.8.0 [INFO] [stderr] Compiling rayon-core v1.10.1 [INFO] [stderr] Compiling unicode-width v0.1.10 [INFO] [stderr] Compiling plotters-backend v0.3.4 [INFO] [stderr] Compiling regex-automata v0.1.10 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling itertools v0.10.5 [INFO] [stderr] Compiling plotters-svg v0.3.3 [INFO] [stderr] Compiling half v1.8.2 [INFO] [stderr] Compiling regex-syntax v0.6.28 [INFO] [stderr] Compiling crossbeam-channel v0.5.6 [INFO] [stderr] Compiling csv-core v0.1.10 [INFO] [stderr] Compiling getrandom v0.2.8 [INFO] [stderr] Compiling crossbeam-deque v0.8.2 [INFO] [stderr] Compiling num_cpus v1.15.0 [INFO] [stderr] Compiling bstr v0.2.17 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling itoa v0.4.8 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling cast v0.3.0 [INFO] [stderr] Compiling same-file v1.0.6 [INFO] [stderr] Compiling clap v2.34.0 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling csv v1.1.6 [INFO] [stderr] Compiling regex v1.7.1 [INFO] [stderr] Compiling criterion-plot v0.4.5 [INFO] [stderr] Compiling rayon v1.6.1 [INFO] [stderr] Compiling walkdir v2.3.2 [INFO] [stderr] Compiling plotters v0.3.4 [INFO] [stderr] Compiling uuid v1.2.2 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling serde_cbor v0.11.2 [INFO] [stderr] Compiling tinytemplate v1.2.1 [INFO] [stderr] Compiling oorandom v11.1.3 [INFO] [stderr] Compiling bio_rascal v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `log::info` [INFO] [stdout] --> src/samtools.rs:5:5 [INFO] [stdout] | [INFO] [stdout] 5 | use log::info; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `taxon` [INFO] [stdout] --> src/taxon.rs:182:36 [INFO] [stdout] | [INFO] [stdout] 182 | pub fn get_ranked_taxon(&self, taxon: u32, rank: &Rank) -> &Taxon { [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_taxon` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `rank` [INFO] [stdout] --> src/taxon.rs:182:48 [INFO] [stdout] | [INFO] [stdout] 182 | pub fn get_ranked_taxon(&self, taxon: u32, rank: &Rank) -> &Taxon { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_rank` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/taxon.rs:225:17 [INFO] [stdout] | [INFO] [stdout] 225 | let mut node = match self.nodes.get_mut(&taxon_id) { [INFO] [stdout] | ----^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling criterion v0.3.6 [INFO] [stdout] warning: unused import: `log::info` [INFO] [stdout] --> src/samtools.rs:5:5 [INFO] [stdout] | [INFO] [stdout] 5 | use log::info; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `taxon` [INFO] [stdout] --> src/taxon.rs:182:36 [INFO] [stdout] | [INFO] [stdout] 182 | pub fn get_ranked_taxon(&self, taxon: u32, rank: &Rank) -> &Taxon { [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_taxon` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `rank` [INFO] [stdout] --> src/taxon.rs:182:48 [INFO] [stdout] | [INFO] [stdout] 182 | pub fn get_ranked_taxon(&self, taxon: u32, rank: &Rank) -> &Taxon { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_rank` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/taxon.rs:225:17 [INFO] [stdout] | [INFO] [stdout] 225 | let mut node = match self.nodes.get_mut(&taxon_id) { [INFO] [stdout] | ----^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/taxon.rs:674:13 [INFO] [stdout] | [INFO] [stdout] 674 | let mut t = taxonomy.get_taxon_mut(&2173).unwrap(); [INFO] [stdout] | ----^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 7.23s [INFO] running `Command { std: "docker" "inspect" "cfa1c4a293276f03601c2f13b03e8cebcf9aa43fceee925dd46e139c0f50a76f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "cfa1c4a293276f03601c2f13b03e8cebcf9aa43fceee925dd46e139c0f50a76f", kill_on_drop: false }` [INFO] [stdout] cfa1c4a293276f03601c2f13b03e8cebcf9aa43fceee925dd46e139c0f50a76f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0b074c097205a61b89e8ad263052f976b2b332c4dc5f02aef1fe52501660d6e" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-04-13" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] cb62a84a2af64225a4762cd9c3ebb5e65e623a17d8e92855cbb213026997101f [INFO] running `Command { std: "docker" "start" "-a" "cb62a84a2af64225a4762cd9c3ebb5e65e623a17d8e92855cbb213026997101f", kill_on_drop: false }` [INFO] [stderr] warning: unused import: `log::info` [INFO] [stderr] --> src/samtools.rs:5:5 [INFO] [stderr] | [INFO] [stderr] 5 | use log::info; [INFO] [stderr] | ^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `taxon` [INFO] [stderr] --> src/taxon.rs:182:36 [INFO] [stderr] | [INFO] [stderr] 182 | pub fn get_ranked_taxon(&self, taxon: u32, rank: &Rank) -> &Taxon { [INFO] [stderr] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_taxon` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_variables)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `rank` [INFO] [stderr] --> src/taxon.rs:182:48 [INFO] [stderr] | [INFO] [stderr] 182 | pub fn get_ranked_taxon(&self, taxon: u32, rank: &Rank) -> &Taxon { [INFO] [stderr] | ^^^^ help: if this is intentional, prefix it with an underscore: `_rank` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/taxon.rs:225:17 [INFO] [stderr] | [INFO] [stderr] 225 | let mut node = match self.nodes.get_mut(&taxon_id) { [INFO] [stderr] | ----^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` on by default [INFO] [stderr] [INFO] [stderr] warning: `bio_rascal` (lib) generated 4 warnings (run `cargo fix --lib -p bio_rascal` to apply 2 suggestions) [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/taxon.rs:674:13 [INFO] [stderr] | [INFO] [stderr] 674 | let mut t = taxonomy.get_taxon_mut(&2173).unwrap(); [INFO] [stderr] | ----^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: `bio_rascal` (lib test) generated 5 warnings (4 duplicates) (run `cargo fix --lib -p bio_rascal --tests` to apply 1 suggestion) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.05s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/bio_rascal-8a485034be5eb062) [INFO] [stdout] [INFO] [stdout] running 39 tests [INFO] [stdout] test fasta::test::test_fasta_file_attrs ... ok [INFO] [stdout] test fasta::test::test_fastareader ... ok [INFO] [stdout] test fasta::test::test_header_parse ... ok [INFO] [stdout] test gff::tests::test_annotation_contains ... ok [INFO] [stdout] test fasta::test::test_header_parse1 ... ok [INFO] [stdout] test gff::tests::test_annotation_get_relative_pos ... ok [INFO] [stdout] test gff::tests::test_annotation_is_syn ... ok [INFO] [stdout] test gff::tests::test_get_attr ... ok [INFO] [stdout] test gff::tests::test_get_codon_at ... ok [INFO] [stdout] test gff::tests::test_gffreader ... ok [INFO] [stdout] test gff::tests::test_gffreader_from_reader ... ok [INFO] [stdout] test gff::tests::test_parse_gff_line ... ok [INFO] [stdout] test samtools::tests::test_depth_add_value ... ok [INFO] [stdout] test samtools::tests::test_depth_coverage1 ... ok [INFO] [stdout] test samtools::tests::test_depth_coverage2 ... ok [INFO] [stdout] test sequence::tests::test_complement_slice ... ok [INFO] [stdout] test sequence::tests::test_complement ... ok [INFO] [stdout] test gff::tests::test_parse_gff_line_taxon_id_negative ... ok [INFO] [stdout] test sequence::tests::test_record_is_correct_fail ... ok [INFO] [stdout] test sequence::tests::test_universal_code ... ok [INFO] [stdout] test sequence::tests::test_record_is_correct ... ok [INFO] [stdout] test snps::tests::test_group_pnps_none ... ok [INFO] [stdout] test snps::tests::test_group_pnps_new ... ok [INFO] [stdout] test snps::tests::test_pnps ... ok [INFO] [stdout] test snps::tests::test_pnps_none ... ok [INFO] [stdout] test snps::tests::test_group_pnps ... ok [INFO] [stdout] test taxon::tests::test_rank ... ok [INFO] [stdout] test snps::tests::test_vcf_record_parse_vcf_line ... ok [INFO] [stdout] test taxon::tests::test_rank_ord ... ok [INFO] [stdout] test taxon::tests::test_taxon_parse_ncbi_node_fail ... ok [INFO] [stdout] test taxon::tests::test_empty_taxonomy ... ok [INFO] [stdout] test taxon::tests::test_taxon_parse_ncbi_node ... ok [INFO] [stdout] test sequence::tests::test_get_seq_exp_changes ... ok [INFO] [stdout] test taxon::tests::test_taxonomy_get_taxon ... ok [INFO] [stdout] test taxon::tests::test_taxon_to_lineage ... ok [INFO] [stdout] test taxon::tests::test_taxonomy_get_taxon_mut ... ok [INFO] [stdout] test taxon::tests::test_taxonomy_has_taxon_id ... ok [INFO] [stdout] test sequence::tests::test_get_seq_exp_changes_uneven_codons ... ok [INFO] [stdout] test snps::tests::test_universal_code_expected ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 39 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests bio_rascal [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "cb62a84a2af64225a4762cd9c3ebb5e65e623a17d8e92855cbb213026997101f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "cb62a84a2af64225a4762cd9c3ebb5e65e623a17d8e92855cbb213026997101f", kill_on_drop: false }` [INFO] [stdout] cb62a84a2af64225a4762cd9c3ebb5e65e623a17d8e92855cbb213026997101f