[INFO] fetching crate rdk-sys 0.1.1... [INFO] testing rdk-sys-0.1.1 against 1.86.0 for beta-1.87-1 [INFO] extracting crate rdk-sys 0.1.1 into /workspace/builds/worker-5-tc1/source [INFO] validating manifest of crates.io crate rdk-sys 0.1.1 on toolchain 1.86.0 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.86.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate rdk-sys 0.1.1 [INFO] finished tweaking crates.io crate rdk-sys 0.1.1 [INFO] tweaked toml for crates.io crate rdk-sys 0.1.1 written to /workspace/builds/worker-5-tc1/source/Cargo.toml [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.86.0" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Locking 55 packages to latest compatible versions [INFO] [stderr] Adding env_logger v0.10.2 (available: v0.11.8) [INFO] [stderr] Adding which v4.4.2 (available: v7.0.3) [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.86.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0b074c097205a61b89e8ad263052f976b2b332c4dc5f02aef1fe52501660d6e" "/opt/rustwide/cargo-home/bin/cargo" "+1.86.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 38c52b5c5af0dc0e49549e6614e1f4c6e8a2739cbc3bd021e7f7c3fb8cd12052 [INFO] running `Command { std: "docker" "start" "-a" "38c52b5c5af0dc0e49549e6614e1f4c6e8a2739cbc3bd021e7f7c3fb8cd12052", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "38c52b5c5af0dc0e49549e6614e1f4c6e8a2739cbc3bd021e7f7c3fb8cd12052", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "38c52b5c5af0dc0e49549e6614e1f4c6e8a2739cbc3bd021e7f7c3fb8cd12052", kill_on_drop: false }` [INFO] [stdout] 38c52b5c5af0dc0e49549e6614e1f4c6e8a2739cbc3bd021e7f7c3fb8cd12052 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0b074c097205a61b89e8ad263052f976b2b332c4dc5f02aef1fe52501660d6e" "/opt/rustwide/cargo-home/bin/cargo" "+1.86.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] a3c31151084b9ae2f435dc815bd745138cc5cf37bcaf73bd088ee674ec1e0ff0 [INFO] running `Command { std: "docker" "start" "-a" "a3c31151084b9ae2f435dc815bd745138cc5cf37bcaf73bd088ee674ec1e0ff0", kill_on_drop: false }` [INFO] [stderr] Compiling shlex v1.3.0 [INFO] [stderr] Compiling proc-macro2 v1.0.94 [INFO] [stderr] Compiling unicode-ident v1.0.18 [INFO] [stderr] Compiling memchr v2.7.4 [INFO] [stderr] Compiling libc v0.2.172 [INFO] [stderr] Compiling termcolor v1.4.1 [INFO] [stderr] Compiling rustix v0.38.44 [INFO] [stderr] Compiling regex-syntax v0.8.5 [INFO] [stderr] Compiling scratch v1.0.8 [INFO] [stderr] Compiling unicode-width v0.2.0 [INFO] [stderr] Compiling bitflags v2.9.0 [INFO] [stderr] Compiling linux-raw-sys v0.4.15 [INFO] [stderr] Compiling rustversion v1.0.20 [INFO] [stderr] Compiling cxxbridge-flags v1.0.157 [INFO] [stderr] Compiling either v1.15.0 [INFO] [stderr] Compiling log v0.4.27 [INFO] [stderr] Compiling home v0.5.11 [INFO] [stderr] Compiling cc v1.2.19 [INFO] [stderr] Compiling humantime v2.2.0 [INFO] [stderr] Compiling foldhash v0.1.5 [INFO] [stderr] Compiling codespan-reporting v0.12.0 [INFO] [stderr] Compiling aho-corasick v1.1.3 [INFO] [stderr] Compiling quote v1.0.40 [INFO] [stderr] Compiling syn v2.0.100 [INFO] [stderr] Compiling link-cplusplus v1.0.10 [INFO] [stderr] Compiling cxx v1.0.157 [INFO] [stderr] Compiling is-terminal v0.4.16 [INFO] [stderr] Compiling which v4.4.2 [INFO] [stderr] Compiling regex-automata v0.4.9 [INFO] [stderr] Compiling cxx-build v1.0.157 [INFO] [stderr] Compiling cxxbridge-macro v1.0.157 [INFO] [stderr] Compiling regex v1.11.1 [INFO] [stderr] Compiling env_logger v0.10.2 [INFO] [stderr] Compiling rdk-sys v0.1.1 (/opt/rustwide/workdir) [INFO] [stderr] warning: rdk-sys@0.1.1: In file included from /opt/rustwide/target/debug/build/rdk-sys-5d9d25a91bb227b1/out/cxxbridge/sources/rdk-sys/src/bindings/atom.rs.cc:1: [INFO] [stderr] warning: rdk-sys@0.1.1: /opt/rustwide/workdir/cpp/include/ro_mol.h:4:10: fatal error: GraphMol/GraphMol.h: No such file or directory [INFO] [stderr] warning: rdk-sys@0.1.1: 4 | #include [INFO] [stderr] warning: rdk-sys@0.1.1: | ^~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: rdk-sys@0.1.1: compilation terminated. [INFO] [stderr] error: failed to run custom build command for `rdk-sys v0.1.1 (/opt/rustwide/workdir)` [INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation. [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/rdk-sys-cb97b262c36330a9/build-script-build` (exit status: 1) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:CXXBRIDGE_PREFIX=rdk-sys [INFO] [stderr] cargo:CXXBRIDGE_DIR0=/opt/rustwide/target/debug/build/rdk-sys-5d9d25a91bb227b1/out/cxxbridge/include [INFO] [stderr] cargo:CXXBRIDGE_DIR1=/opt/rustwide/target/debug/build/rdk-sys-5d9d25a91bb227b1/out/cxxbridge/crate [INFO] [stderr] OUT_DIR = Some(/opt/rustwide/target/debug/build/rdk-sys-5d9d25a91bb227b1/out) [INFO] [stderr] OPT_LEVEL = Some(0) [INFO] [stderr] TARGET = Some(x86_64-unknown-linux-gnu) [INFO] [stderr] HOST = Some(x86_64-unknown-linux-gnu) [INFO] [stderr] cargo:rerun-if-env-changed=CXX_x86_64-unknown-linux-gnu [INFO] [stderr] CXX_x86_64-unknown-linux-gnu = None [INFO] [stderr] cargo:rerun-if-env-changed=CXX_x86_64_unknown_linux_gnu [INFO] [stderr] CXX_x86_64_unknown_linux_gnu = None [INFO] [stderr] cargo:rerun-if-env-changed=HOST_CXX [INFO] [stderr] HOST_CXX = None [INFO] [stderr] cargo:rerun-if-env-changed=CXX [INFO] [stderr] CXX = None [INFO] [stderr] cargo:rerun-if-env-changed=CC_ENABLE_DEBUG_OUTPUT [INFO] [stderr] RUSTC_WRAPPER = None [INFO] [stderr] cargo:rerun-if-env-changed=CRATE_CC_NO_DEFAULTS [INFO] [stderr] CRATE_CC_NO_DEFAULTS = None [INFO] [stderr] DEBUG = Some(true) [INFO] [stderr] CARGO_CFG_TARGET_FEATURE = Some(fxsr,sse,sse2) [INFO] [stderr] cargo:rerun-if-env-changed=CXXFLAGS [INFO] [stderr] CXXFLAGS = None [INFO] [stderr] cargo:rerun-if-env-changed=HOST_CXXFLAGS [INFO] [stderr] HOST_CXXFLAGS = None [INFO] [stderr] cargo:rerun-if-env-changed=CXXFLAGS_x86_64_unknown_linux_gnu [INFO] [stderr] CXXFLAGS_x86_64_unknown_linux_gnu = None [INFO] [stderr] cargo:rerun-if-env-changed=CXXFLAGS_x86_64-unknown-linux-gnu [INFO] [stderr] CXXFLAGS_x86_64-unknown-linux-gnu = None [INFO] [stderr] CARGO_ENCODED_RUSTFLAGS = Some(--cap-lints=warn) [INFO] [stderr] cargo:warning=In file included from /opt/rustwide/target/debug/build/rdk-sys-5d9d25a91bb227b1/out/cxxbridge/sources/rdk-sys/src/bindings/atom.rs.cc:1: [INFO] [stderr] cargo:warning=/opt/rustwide/workdir/cpp/include/ro_mol.h:4:10: fatal error: GraphMol/GraphMol.h: No such file or directory [INFO] [stderr] cargo:warning= 4 | #include [INFO] [stderr] cargo:warning= | ^~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] cargo:warning=compilation terminated. [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] [INFO] [stderr] CXX include path: [INFO] [stderr] /opt/rustwide/target/debug/build/rdk-sys-5d9d25a91bb227b1/out/cxxbridge/include [INFO] [stderr] /opt/rustwide/target/debug/build/rdk-sys-5d9d25a91bb227b1/out/cxxbridge/crate [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] error occurred in cc-rs: command did not execute successfully (status code exit status: 1): LC_ALL="C" "c++" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-gdwarf-4" "-fno-omit-frame-pointer" "-m64" "-I" "/opt/rustwide/target/debug/build/rdk-sys-5d9d25a91bb227b1/out/cxxbridge/include" "-I" "/opt/rustwide/target/debug/build/rdk-sys-5d9d25a91bb227b1/out/cxxbridge/crate" "-I" "/usr/local/include" "-I" "/usr/local/include/rdkit" "-I" "/usr/include" "-I" "/usr/include/rdkit" "-I" "/opt/rustwide/workdir" "-std=c++17" "-o" "/opt/rustwide/target/debug/build/rdk-sys-5d9d25a91bb227b1/out/c749e148833f51c6-atom.rs.o" "-c" "/opt/rustwide/target/debug/build/rdk-sys-5d9d25a91bb227b1/out/cxxbridge/sources/rdk-sys/src/bindings/atom.rs.cc" [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-Wl,--version-script=/tmp/rustclpj6u6/list" "-Wl,--no-undefined-version" "-m64" "/tmp/rustclpj6u6/symbols.o" "<16 object files omitted>" "/opt/rustwide/target/debug/deps/cxxbridge_macro-318799858e05c706.erc6ziqwhn5fyj50iv1zl1ukp.rcgu.rmeta" "<1 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/{libsyn-f8bcf0d7729de318.rlib,libquote-b5700bf01115399b.rlib,libproc_macro2-35c50b1e65def92d.rlib,libunicode_ident-ed423f85105c13b2.rlib}.rlib" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libproc_macro-*,libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,libcfg_if-*,liblibc-*,liballoc-*,librustc_std_workspace_core-*,libcore-*,libcompiler_builtins-*}.rlib" "-Wl,-Bdynamic" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/opt/rustwide/target/debug/deps/libcxxbridge_macro-318799858e05c706.so" "-Wl,--gc-sections" "-shared" "-Wl,-z,relro,-z,now" "-nodefaultlibs" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: /usr/bin/ld: final link failed: No space left on device [INFO] [stdout] collect2: error: ld returned 1 exit status [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `cxxbridge-macro` (lib) due to 1 previous error [INFO] running `Command { std: "docker" "inspect" "a3c31151084b9ae2f435dc815bd745138cc5cf37bcaf73bd088ee674ec1e0ff0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a3c31151084b9ae2f435dc815bd745138cc5cf37bcaf73bd088ee674ec1e0ff0", kill_on_drop: false }` [INFO] [stdout] a3c31151084b9ae2f435dc815bd745138cc5cf37bcaf73bd088ee674ec1e0ff0