[INFO] cloning repository https://github.com/kgori/alignomatic [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/kgori/alignomatic" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkgori%2Falignomatic", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkgori%2Falignomatic'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] cea6579be21c79b9ae0a2116c6874ee9b41974c2 [INFO] testing kgori/alignomatic against 1.86.0 for beta-1.87-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkgori%2Falignomatic" "/workspace/builds/worker-2-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc1/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/kgori/alignomatic on toolchain 1.86.0 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.86.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/kgori/alignomatic [INFO] finished tweaking git repo https://github.com/kgori/alignomatic [INFO] tweaked toml for git repo https://github.com/kgori/alignomatic written to /workspace/builds/worker-2-tc1/source/Cargo.toml [INFO] crate git repo https://github.com/kgori/alignomatic already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.86.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Updating git repository `https://github.com/kgori/rust-bwa.git` [INFO] [stderr] Updating git submodule `https://github.com/10XGenomics/bwa.git` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded cmake v0.1.52 [INFO] [stderr] Downloaded fs-utils v1.1.4 [INFO] [stderr] Downloaded bio-types v1.0.4 [INFO] [stderr] Downloaded libdeflater v0.7.5 [INFO] [stderr] Downloaded bgzf v0.2.0 [INFO] [stderr] Downloaded bgzip v0.3.1 [INFO] [stderr] Downloaded liblzma v0.3.5 [INFO] [stderr] Downloaded rust-htslib v0.49.0 [INFO] [stderr] Downloaded ordered-float v4.5.0 [INFO] [stderr] Downloaded niffler v2.6.0 [INFO] [stderr] Downloaded libdeflate-sys v0.7.5 [INFO] [stderr] Downloaded bio v2.0.3 [INFO] [stderr] Downloaded liblzma-sys v0.3.9 [INFO] [stderr] Downloaded hts-sys v2.2.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0b074c097205a61b89e8ad263052f976b2b332c4dc5f02aef1fe52501660d6e" "/opt/rustwide/cargo-home/bin/cargo" "+1.86.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 8b33e66ddb98e34411f11e76bbbbdb0eec179f99f070df7014e26ab56f96b653 [INFO] running `Command { std: "docker" "start" "-a" "8b33e66ddb98e34411f11e76bbbbdb0eec179f99f070df7014e26ab56f96b653", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "8b33e66ddb98e34411f11e76bbbbdb0eec179f99f070df7014e26ab56f96b653", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "8b33e66ddb98e34411f11e76bbbbdb0eec179f99f070df7014e26ab56f96b653", kill_on_drop: false }` [INFO] [stdout] 8b33e66ddb98e34411f11e76bbbbdb0eec179f99f070df7014e26ab56f96b653 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0b074c097205a61b89e8ad263052f976b2b332c4dc5f02aef1fe52501660d6e" "/opt/rustwide/cargo-home/bin/cargo" "+1.86.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 202bcbfc1b632c1adf2a51352b4e0e91472c923f629888fb38ca081326f6b534 [INFO] running `Command { std: "docker" "start" "-a" "202bcbfc1b632c1adf2a51352b4e0e91472c923f629888fb38ca081326f6b534", kill_on_drop: false }` [INFO] [stderr] Compiling syn v2.0.90 [INFO] [stderr] Compiling libc v0.2.168 [INFO] [stderr] Compiling shlex v1.3.0 [INFO] [stderr] Compiling pkg-config v0.3.31 [INFO] [stderr] Compiling libm v0.2.11 [INFO] [stderr] Compiling stable_deref_trait v1.2.0 [INFO] [stderr] Compiling litemap v0.7.4 [INFO] [stderr] Compiling glob v0.3.1 [INFO] [stderr] Compiling writeable v0.5.5 [INFO] [stderr] Compiling regex-syntax v0.8.5 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling aho-corasick v1.1.3 [INFO] [stderr] Compiling minimal-lexical v0.2.1 [INFO] [stderr] Compiling lazy_static v1.5.0 [INFO] [stderr] Compiling icu_locid_transform_data v1.5.0 [INFO] [stderr] Compiling matrixmultiply v0.3.9 [INFO] [stderr] Compiling libloading v0.8.6 [INFO] [stderr] Compiling icu_properties_data v1.5.0 [INFO] [stderr] Compiling bytemuck v1.20.0 [INFO] [stderr] Compiling nom v7.1.3 [INFO] [stderr] Compiling vcpkg v0.2.15 [INFO] [stderr] Compiling either v1.13.0 [INFO] [stderr] Compiling bindgen v0.69.5 [INFO] [stderr] Compiling paste v1.0.15 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling rustversion v1.0.18 [INFO] [stderr] Compiling clang-sys v1.8.1 [INFO] [stderr] Compiling safe_arch v0.7.2 [INFO] [stderr] Compiling itertools v0.12.1 [INFO] [stderr] Compiling write16 v1.0.0 [INFO] [stderr] Compiling utf8_iter v1.0.4 [INFO] [stderr] Compiling typenum v1.17.0 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling icu_normalizer_data v1.5.0 [INFO] [stderr] Compiling smallvec v1.13.2 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling utf16_iter v1.0.5 [INFO] [stderr] Compiling bitflags v2.6.0 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Compiling wide v0.7.30 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling jobserver v0.1.32 [INFO] [stderr] Compiling getrandom v0.2.15 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling regex-automata v0.4.9 [INFO] [stderr] Compiling cc v1.2.3 [INFO] [stderr] Compiling thiserror v2.0.6 [INFO] [stderr] Compiling adler2 v2.0.0 [INFO] [stderr] Compiling zstd-safe v7.2.1 [INFO] [stderr] Compiling anyhow v1.0.94 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling num-complex v0.4.6 [INFO] [stderr] Compiling approx v0.5.1 [INFO] [stderr] Compiling hashbrown v0.15.2 [INFO] [stderr] Compiling ryu v1.0.18 [INFO] [stderr] Compiling equivalent v1.0.1 [INFO] [stderr] Compiling itoa v1.0.14 [INFO] [stderr] Compiling percent-encoding v2.3.1 [INFO] [stderr] Compiling form_urlencoded v1.2.1 [INFO] [stderr] Compiling miniz_oxide v0.8.0 [INFO] [stderr] Compiling csv-core v0.1.11 [INFO] [stderr] Compiling cexpr v0.6.0 [INFO] [stderr] Compiling num-rational v0.4.2 [INFO] [stderr] Compiling crc32fast v1.4.2 [INFO] [stderr] Compiling bit-vec v0.8.0 [INFO] [stderr] Compiling fixedbitset v0.4.2 [INFO] [stderr] Compiling regex v1.11.1 [INFO] [stderr] Compiling simba v0.8.1 [INFO] [stderr] Compiling indexmap v2.7.0 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling bit-set v0.8.0 [INFO] [stderr] Compiling ndarray v0.16.1 [INFO] [stderr] Compiling flate2 v1.0.35 [INFO] [stderr] Compiling itertools v0.13.0 [INFO] [stderr] Compiling cmake v0.1.52 [INFO] [stderr] Compiling ordered-float v4.5.0 [INFO] [stderr] Compiling petgraph v0.6.5 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling bytecount v0.6.8 [INFO] [stderr] Compiling log v0.4.22 [INFO] [stderr] Compiling ieee754 v0.2.6 [INFO] [stderr] Compiling editdistancek v1.0.2 [INFO] [stderr] Compiling linear-map v1.2.0 [INFO] [stderr] Compiling triple_accel v0.4.0 [INFO] [stderr] Compiling strum v0.26.3 [INFO] [stderr] Compiling clap_builder v4.5.23 [INFO] [stderr] Compiling arrayref v0.3.9 [INFO] [stderr] Compiling humantime v2.1.0 [INFO] [stderr] Compiling bytes v1.9.0 [INFO] [stderr] Compiling constant_time_eq v0.3.1 [INFO] [stderr] Compiling arrayvec v0.7.6 [INFO] [stderr] Compiling num_cpus v1.16.0 [INFO] [stderr] Compiling libz-sys v1.1.20 [INFO] [stderr] Compiling zstd-sys v2.0.13+zstd.1.5.6 [INFO] [stderr] Compiling libdeflate-sys v0.7.5 [INFO] [stderr] Compiling liblzma-sys v0.3.9 [INFO] [stderr] Compiling bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Compiling bwa-sys v0.1.0 (https://github.com/kgori/rust-bwa.git?branch=dev#c4e82088) [INFO] [stderr] Compiling blake3 v1.7.0 [INFO] [stderr] Compiling env_filter v0.1.2 [INFO] [stderr] Compiling synstructure v0.13.1 [INFO] [stderr] Compiling bzip2 v0.4.4 [INFO] [stderr] Compiling env_logger v0.11.5 [INFO] [stderr] Compiling libdeflater v0.7.5 [INFO] [stderr] Compiling zerofrom-derive v0.1.5 [INFO] [stderr] Compiling yoke-derive v0.7.5 [INFO] [stderr] Compiling zerovec-derive v0.10.3 [INFO] [stderr] Compiling displaydoc v0.2.5 [INFO] [stderr] Compiling serde_derive v1.0.219 [INFO] [stderr] Compiling zerocopy-derive v0.7.35 [INFO] [stderr] Compiling icu_provider_macros v1.5.0 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling nalgebra-macros v0.2.2 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Compiling zerofrom v0.1.5 [INFO] [stderr] Compiling thiserror-impl v2.0.6 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Compiling derive-new v0.7.0 [INFO] [stderr] Compiling zerocopy v0.7.35 [INFO] [stderr] Compiling yoke v0.7.5 [INFO] [stderr] Compiling zerovec v0.10.4 [INFO] [stderr] Compiling clap_derive v4.5.18 [INFO] [stderr] Compiling ppv-lite86 v0.2.20 [INFO] [stderr] Compiling enum-map v2.7.3 [INFO] [stderr] Compiling tinystr v0.7.6 [INFO] [stderr] Compiling icu_collections v1.5.0 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling thiserror v1.0.69 [INFO] [stderr] Compiling bgzip v0.3.1 [INFO] [stderr] Compiling bgzf v0.2.0 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling icu_locid v1.5.0 [INFO] [stderr] Compiling liblzma v0.3.5 [INFO] [stderr] Compiling icu_provider v1.5.0 [INFO] [stderr] Compiling zstd v0.13.2 [INFO] [stderr] Compiling serde v1.0.219 [INFO] [stderr] Compiling niffler v2.6.0 [INFO] [stderr] Compiling icu_locid_transform v1.5.0 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling hts-sys v2.2.0 [INFO] [stderr] Compiling clap v4.5.23 [INFO] [stderr] Compiling nalgebra v0.32.6 [INFO] [stderr] Compiling icu_properties v1.5.1 [INFO] [stderr] Compiling icu_normalizer v1.5.0 [INFO] [stderr] Compiling bio-types v1.0.4 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling serde_bytes v0.11.15 [INFO] [stderr] Compiling csv v1.3.1 [INFO] [stderr] Compiling multimap v0.10.0 [INFO] [stderr] Compiling idna_adapter v1.2.0 [INFO] [stderr] Compiling serde_json v1.0.140 [INFO] [stderr] Compiling idna v1.0.3 [INFO] [stderr] Compiling url v2.5.4 [INFO] [stderr] Compiling statrs v0.17.1 [INFO] [stderr] Compiling bio v2.0.3 [INFO] [stderr] Compiling rust-htslib v0.49.0 [INFO] [stderr] Compiling bwa v0.1.1 (https://github.com/kgori/rust-bwa.git?branch=dev#c4e82088) [INFO] [stderr] Compiling alignomatic v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 26s [INFO] running `Command { std: "docker" "inspect" "202bcbfc1b632c1adf2a51352b4e0e91472c923f629888fb38ca081326f6b534", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "202bcbfc1b632c1adf2a51352b4e0e91472c923f629888fb38ca081326f6b534", kill_on_drop: false }` [INFO] [stdout] 202bcbfc1b632c1adf2a51352b4e0e91472c923f629888fb38ca081326f6b534 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0b074c097205a61b89e8ad263052f976b2b332c4dc5f02aef1fe52501660d6e" "/opt/rustwide/cargo-home/bin/cargo" "+1.86.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] d5949a4fcabaee14124209c90536ce8be854d73342e8b3f9518795303fe00efb [INFO] running `Command { std: "docker" "start" "-a" "d5949a4fcabaee14124209c90536ce8be854d73342e8b3f9518795303fe00efb", kill_on_drop: false }` [INFO] [stderr] Compiling alignomatic v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 3.15s [INFO] running `Command { std: "docker" "inspect" "d5949a4fcabaee14124209c90536ce8be854d73342e8b3f9518795303fe00efb", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d5949a4fcabaee14124209c90536ce8be854d73342e8b3f9518795303fe00efb", kill_on_drop: false }` [INFO] [stdout] d5949a4fcabaee14124209c90536ce8be854d73342e8b3f9518795303fe00efb [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0b074c097205a61b89e8ad263052f976b2b332c4dc5f02aef1fe52501660d6e" "/opt/rustwide/cargo-home/bin/cargo" "+1.86.0" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 9a0840de76ff77d6dacd659ba5b18fe285dee0c51420f13303e01e1445f6c897 [INFO] running `Command { std: "docker" "start" "-a" "9a0840de76ff77d6dacd659ba5b18fe285dee0c51420f13303e01e1445f6c897", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.19s [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/debug/deps/alignomatic-be3a037d18164cd3) [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stdout] test utils::test::test_bam_to_fastq ... FAILED [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- utils::test::test_bam_to_fastq stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'utils::test::test_bam_to_fastq' panicked at src/utils.rs:223:70: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: FileNotFound { path: "data/test.bam" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x5e6699dac900 - std::backtrace_rs::backtrace::libunwind::trace::h2b8934d68a0c74cb [INFO] [stdout] at /rustc/05f9846f893b09a1be1fc8560e33fc3c815cfecb/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stdout] 1: 0x5e6699dac900 - std::backtrace_rs::backtrace::trace_unsynchronized::h72d137991fa6eab8 [INFO] [stdout] at /rustc/05f9846f893b09a1be1fc8560e33fc3c815cfecb/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stdout] 2: 0x5e6699dac900 - std::sys::backtrace::_print_fmt::h3e831e32e6da920b [INFO] [stdout] at /rustc/05f9846f893b09a1be1fc8560e33fc3c815cfecb/library/std/src/sys/backtrace.rs:66:9 [INFO] [stdout] 3: 0x5e6699dac900 - ::fmt::h6d42cc84fc840290 [INFO] [stdout] at /rustc/05f9846f893b09a1be1fc8560e33fc3c815cfecb/library/std/src/sys/backtrace.rs:39:26 [INFO] [stdout] 4: 0x5e6699dd30a3 - core::fmt::rt::Argument::fmt::h7239af9e2199f2a8 [INFO] [stdout] at /rustc/05f9846f893b09a1be1fc8560e33fc3c815cfecb/library/core/src/fmt/rt.rs:177:76 [INFO] [stdout] 5: 0x5e6699dd30a3 - core::fmt::write::h5af61a909e3ec64d [INFO] [stdout] at /rustc/05f9846f893b09a1be1fc8560e33fc3c815cfecb/library/core/src/fmt/mod.rs:1449:21 [INFO] [stdout] 6: 0x5e6699da9833 - std::io::Write::write_fmt::h64baa9197d9a3b04 [INFO] [stdout] at /rustc/05f9846f893b09a1be1fc8560e33fc3c815cfecb/library/std/src/io/mod.rs:1890:15 [INFO] [stdout] 7: 0x5e6699dac752 - std::sys::backtrace::BacktraceLock::print::h555579e7396c26ac [INFO] [stdout] at /rustc/05f9846f893b09a1be1fc8560e33fc3c815cfecb/library/std/src/sys/backtrace.rs:42:9 [INFO] [stdout] 8: 0x5e6699dadd2f - std::panicking::default_hook::{{closure}}::h9128866118196224 [INFO] [stdout] at /rustc/05f9846f893b09a1be1fc8560e33fc3c815cfecb/library/std/src/panicking.rs:298:22 [INFO] [stdout] 9: 0x5e6699dadb48 - std::panicking::default_hook::h52e9e7314e0255f6 [INFO] [stdout] at /rustc/05f9846f893b09a1be1fc8560e33fc3c815cfecb/library/std/src/panicking.rs:322:9 [INFO] [stdout] 10: 0x5e6699bf2d35 - as core::ops::function::Fn>::call::hb86f691850cc3c26 [INFO] [stdout] at /rustc/05f9846f893b09a1be1fc8560e33fc3c815cfecb/library/alloc/src/boxed.rs:1990:9 [INFO] [stdout] 11: 0x5e6699bf2d35 - test::test_main::{{closure}}::h903d8079e3c94d93 [INFO] [stdout] at /rustc/05f9846f893b09a1be1fc8560e33fc3c815cfecb/library/test/src/lib.rs:135:21 [INFO] [stdout] 12: 0x5e6699dae7a3 - as core::ops::function::Fn>::call::h7c356b28a03897d7 [INFO] [stdout] at /rustc/05f9846f893b09a1be1fc8560e33fc3c815cfecb/library/alloc/src/boxed.rs:1990:9 [INFO] [stdout] 13: 0x5e6699dae7a3 - std::panicking::rust_panic_with_hook::h541791bcc774ef34 [INFO] [stdout] at /rustc/05f9846f893b09a1be1fc8560e33fc3c815cfecb/library/std/src/panicking.rs:839:13 [INFO] [stdout] 14: 0x5e6699dae47a - std::panicking::begin_panic_handler::{{closure}}::h6479a2f0137c7d19 [INFO] [stdout] at /rustc/05f9846f893b09a1be1fc8560e33fc3c815cfecb/library/std/src/panicking.rs:704:13 [INFO] [stdout] 15: 0x5e6699dace19 - std::sys::backtrace::__rust_end_short_backtrace::ha04e7c0fc61ded91 [INFO] [stdout] at /rustc/05f9846f893b09a1be1fc8560e33fc3c815cfecb/library/std/src/sys/backtrace.rs:168:18 [INFO] [stdout] 16: 0x5e6699dae10d - rust_begin_unwind [INFO] [stdout] at /rustc/05f9846f893b09a1be1fc8560e33fc3c815cfecb/library/std/src/panicking.rs:695:5 [INFO] [stdout] 17: 0x5e6699bab860 - core::panicking::panic_fmt::h5764ee7030b7a73d [INFO] [stdout] at /rustc/05f9846f893b09a1be1fc8560e33fc3c815cfecb/library/core/src/panicking.rs:75:14 [INFO] [stdout] 18: 0x5e6699babcd6 - core::result::unwrap_failed::h3ff7104a9ace307a [INFO] [stdout] at /rustc/05f9846f893b09a1be1fc8560e33fc3c815cfecb/library/core/src/result.rs:1704:5 [INFO] [stdout] 19: 0x5e6699bb1cb0 - core::result::Result::unwrap::hd886ec43f48cf8a1 [INFO] [stdout] at /rustc/05f9846f893b09a1be1fc8560e33fc3c815cfecb/library/core/src/result.rs:1109:23 [INFO] [stdout] 20: 0x5e6699bb1cb0 - alignomatic::utils::test::test_bam_to_fastq::hc73a20d46f0c9caa [INFO] [stdout] at /opt/rustwide/workdir/src/utils.rs:223:30 [INFO] [stdout] 21: 0x5e6699bb1be7 - alignomatic::utils::test::test_bam_to_fastq::{{closure}}::h55072873445fa8e1 [INFO] [stdout] at /opt/rustwide/workdir/src/utils.rs:222:27 [INFO] [stdout] 22: 0x5e6699badb76 - core::ops::function::FnOnce::call_once::hb0983958ac925815 [INFO] [stdout] at /rustc/05f9846f893b09a1be1fc8560e33fc3c815cfecb/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 23: 0x5e6699bf84bb - core::ops::function::FnOnce::call_once::h1dfa20b1ec1f6e08 [INFO] [stdout] at /rustc/05f9846f893b09a1be1fc8560e33fc3c815cfecb/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 24: 0x5e6699bf84bb - test::__rust_begin_short_backtrace::h7b10906492afc420 [INFO] [stdout] at /rustc/05f9846f893b09a1be1fc8560e33fc3c815cfecb/library/test/src/lib.rs:637:18 [INFO] [stdout] 25: 0x5e6699bf73a8 - test::run_test_in_process::{{closure}}::h51c1c0d319f72c0a [INFO] [stdout] at /rustc/05f9846f893b09a1be1fc8560e33fc3c815cfecb/library/test/src/lib.rs:660:60 [INFO] [stdout] 26: 0x5e6699bf73a8 - as core::ops::function::FnOnce<()>>::call_once::h5fadb750f3dbe714 [INFO] [stdout] at /rustc/05f9846f893b09a1be1fc8560e33fc3c815cfecb/library/core/src/panic/unwind_safe.rs:272:9 [INFO] [stdout] 27: 0x5e6699bf73a8 - std::panicking::try::do_call::h1ca5071cef82bb40 [INFO] [stdout] at /rustc/05f9846f893b09a1be1fc8560e33fc3c815cfecb/library/std/src/panicking.rs:587:40 [INFO] [stdout] 28: 0x5e6699bf73a8 - std::panicking::try::h6931de76fb9a61b1 [INFO] [stdout] at /rustc/05f9846f893b09a1be1fc8560e33fc3c815cfecb/library/std/src/panicking.rs:550:19 [INFO] [stdout] 29: 0x5e6699bf73a8 - std::panic::catch_unwind::h67fc9dccf413f4e5 [INFO] [stdout] at /rustc/05f9846f893b09a1be1fc8560e33fc3c815cfecb/library/std/src/panic.rs:358:14 [INFO] [stdout] 30: 0x5e6699bf73a8 - test::run_test_in_process::ha966dfbb1d048be5 [INFO] [stdout] at /rustc/05f9846f893b09a1be1fc8560e33fc3c815cfecb/library/test/src/lib.rs:660:27 [INFO] [stdout] 31: 0x5e6699bf73a8 - test::run_test::{{closure}}::he209928ac5e8a3b8 [INFO] [stdout] at /rustc/05f9846f893b09a1be1fc8560e33fc3c815cfecb/library/test/src/lib.rs:581:43 [INFO] [stdout] 32: 0x5e6699bbb335 - test::run_test::{{closure}}::h34c6289e0b5ed5a5 [INFO] [stdout] at /rustc/05f9846f893b09a1be1fc8560e33fc3c815cfecb/library/test/src/lib.rs:611:41 [INFO] [stdout] 33: 0x5e6699bbb335 - std::sys::backtrace::__rust_begin_short_backtrace::h365aabf21799e6fc [INFO] [stdout] at /rustc/05f9846f893b09a1be1fc8560e33fc3c815cfecb/library/std/src/sys/backtrace.rs:152:18 [INFO] [stdout] 34: 0x5e6699bbedaa - std::thread::Builder::spawn_unchecked_::{{closure}}::{{closure}}::h3d5e582cba74b1c3 [INFO] [stdout] at /rustc/05f9846f893b09a1be1fc8560e33fc3c815cfecb/library/std/src/thread/mod.rs:559:17 [INFO] [stdout] 35: 0x5e6699bbedaa - as core::ops::function::FnOnce<()>>::call_once::h1214c75c3f73f94f [INFO] [stdout] at /rustc/05f9846f893b09a1be1fc8560e33fc3c815cfecb/library/core/src/panic/unwind_safe.rs:272:9 [INFO] [stdout] 36: 0x5e6699bbedaa - std::panicking::try::do_call::h73540336a45c0cec [INFO] [stdout] at /rustc/05f9846f893b09a1be1fc8560e33fc3c815cfecb/library/std/src/panicking.rs:587:40 [INFO] [stdout] 37: 0x5e6699bbedaa - std::panicking::try::h428956564307af63 [INFO] [stdout] at /rustc/05f9846f893b09a1be1fc8560e33fc3c815cfecb/library/std/src/panicking.rs:550:19 [INFO] [stdout] 38: 0x5e6699bbedaa - std::panic::catch_unwind::h1a53a6ea2f2041e3 [INFO] [stdout] at /rustc/05f9846f893b09a1be1fc8560e33fc3c815cfecb/library/std/src/panic.rs:358:14 [INFO] [stdout] 39: 0x5e6699bbedaa - std::thread::Builder::spawn_unchecked_::{{closure}}::hac66cbb88d807e14 [INFO] [stdout] at /rustc/05f9846f893b09a1be1fc8560e33fc3c815cfecb/library/std/src/thread/mod.rs:557:30 [INFO] [stdout] 40: 0x5e6699bbedaa - core::ops::function::FnOnce::call_once{{vtable.shim}}::had7e2d02878d3212 [INFO] [stdout] at /rustc/05f9846f893b09a1be1fc8560e33fc3c815cfecb/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 41: 0x5e6699db258b - as core::ops::function::FnOnce>::call_once::h292d1663b0785fda [INFO] [stdout] at /rustc/05f9846f893b09a1be1fc8560e33fc3c815cfecb/library/alloc/src/boxed.rs:1976:9 [INFO] [stdout] 42: 0x5e6699db258b - as core::ops::function::FnOnce>::call_once::h9d4af7b531852d72 [INFO] [stdout] at /rustc/05f9846f893b09a1be1fc8560e33fc3c815cfecb/library/alloc/src/boxed.rs:1976:9 [INFO] [stdout] 43: 0x5e6699db258b - std::sys::pal::unix::thread::Thread::new::thread_start::hcc5ed016d554f327 [INFO] [stdout] at /rustc/05f9846f893b09a1be1fc8560e33fc3c815cfecb/library/std/src/sys/pal/unix/thread.rs:106:17 [INFO] [stdout] 44: 0x716846172aa4 - [INFO] [stdout] 45: 0x7168461ffa34 - clone [INFO] [stdout] 46: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] utils::test::test_bam_to_fastq [INFO] [stdout] [INFO] [stdout] test result: FAILED. 0 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.14s [INFO] [stdout] [INFO] [stderr] error: test failed, to rerun pass `--bin alignomatic` [INFO] running `Command { std: "docker" "inspect" "9a0840de76ff77d6dacd659ba5b18fe285dee0c51420f13303e01e1445f6c897", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "9a0840de76ff77d6dacd659ba5b18fe285dee0c51420f13303e01e1445f6c897", kill_on_drop: false }` [INFO] [stdout] 9a0840de76ff77d6dacd659ba5b18fe285dee0c51420f13303e01e1445f6c897