[INFO] cloning repository https://github.com/mal2017/tcq [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/mal2017/tcq" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmal2017%2Ftcq", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmal2017%2Ftcq'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 8f1d6f947f2d7e33eec738ba82cec4875b4e4f4f [INFO] testing mal2017/tcq against beta-2025-02-18 for beta-1.86-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmal2017%2Ftcq" "/workspace/builds/worker-4-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc2/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/mal2017/tcq on toolchain beta-2025-02-18 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-02-18" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/mal2017/tcq [INFO] finished tweaking git repo https://github.com/mal2017/tcq [INFO] tweaked toml for git repo https://github.com/mal2017/tcq written to /workspace/builds/worker-4-tc2/source/Cargo.toml [INFO] crate git repo https://github.com/mal2017/tcq already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-02-18" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] warning: no edition set: defaulting to the 2015 edition while the latest is 2024 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3959728d45483eb673ba100a951a6b9f5012970368db2a9e08e0ac9b67c8a5ad" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-02-18" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] e58b53f49894cbaed57793dfd7b3e812b406e439c5e02bd15fd18b1a1117d4af [INFO] running `Command { std: "docker" "start" "-a" "e58b53f49894cbaed57793dfd7b3e812b406e439c5e02bd15fd18b1a1117d4af", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "e58b53f49894cbaed57793dfd7b3e812b406e439c5e02bd15fd18b1a1117d4af", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e58b53f49894cbaed57793dfd7b3e812b406e439c5e02bd15fd18b1a1117d4af", kill_on_drop: false }` [INFO] [stdout] e58b53f49894cbaed57793dfd7b3e812b406e439c5e02bd15fd18b1a1117d4af [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3959728d45483eb673ba100a951a6b9f5012970368db2a9e08e0ac9b67c8a5ad" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-02-18" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 63023e3c777fd2390be6aa7f383cd3130e352aeb74d6167c97ece74fa8c89ab7 [INFO] running `Command { std: "docker" "start" "-a" "63023e3c777fd2390be6aa7f383cd3130e352aeb74d6167c97ece74fa8c89ab7", kill_on_drop: false }` [INFO] [stderr] warning: no edition set: defaulting to the 2015 edition while the latest is 2024 [INFO] [stderr] Compiling libc v0.2.53 [INFO] [stderr] Compiling cc v1.0.36 [INFO] [stderr] Compiling autocfg v0.1.2 [INFO] [stderr] Compiling memchr v2.2.0 [INFO] [stderr] Compiling proc-macro2 v0.4.29 [INFO] [stderr] Compiling unicode-xid v0.1.0 [INFO] [stderr] Compiling syn v0.15.33 [INFO] [stderr] Compiling num-traits v0.2.6 [INFO] [stderr] Compiling serde v1.0.90 [INFO] [stderr] Compiling rand_core v0.4.0 [INFO] [stderr] Compiling lazy_static v1.3.0 [INFO] [stderr] Compiling regex v1.1.6 [INFO] [stderr] Compiling ucd-util v0.1.3 [INFO] [stderr] Compiling thread_local v0.3.6 [INFO] [stderr] Compiling utf8-ranges v1.0.2 [INFO] [stderr] Compiling regex-syntax v0.6.6 [INFO] [stderr] Compiling cfg-if v0.1.7 [INFO] [stderr] Compiling quote v0.6.12 [INFO] [stderr] Compiling quick-error v1.2.2 [INFO] [stderr] Compiling rand_core v0.3.1 [INFO] [stderr] Compiling byteorder v1.3.1 [INFO] [stderr] Compiling scopeguard v0.3.3 [INFO] [stderr] Compiling atty v0.2.11 [INFO] [stderr] Compiling backtrace v0.3.15 [INFO] [stderr] Compiling semver-parser v0.7.0 [INFO] [stderr] Compiling version_check v0.1.5 [INFO] [stderr] Compiling backtrace-sys v0.1.28 [INFO] [stderr] Compiling aho-corasick v0.7.3 [INFO] [stderr] Compiling pkg-config v0.3.14 [INFO] [stderr] Compiling glob v0.2.11 [INFO] [stderr] Compiling unicode-width v0.1.5 [INFO] [stderr] Compiling smallvec v0.6.9 [INFO] [stderr] Compiling nom v4.2.3 [INFO] [stderr] Compiling semver v0.9.0 [INFO] [stderr] Compiling libloading v0.5.0 [INFO] [stderr] Compiling clang-sys v0.28.0 [INFO] [stderr] Compiling rand_chacha v0.1.1 [INFO] [stderr] Compiling rand_pcg v0.1.2 [INFO] [stderr] Compiling rustc-demangle v0.1.14 [INFO] [stderr] Compiling rustc_version v0.2.3 [INFO] [stderr] Compiling humantime v1.2.0 [INFO] [stderr] Compiling log v0.4.6 [INFO] [stderr] Compiling rand v0.6.5 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling either v1.5.2 [INFO] [stderr] Compiling termcolor v1.0.4 [INFO] [stderr] Compiling parking_lot_core v0.4.0 [INFO] [stderr] Compiling failure v0.1.5 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling textwrap v0.10.0 [INFO] [stderr] Compiling rand_os v0.1.3 [INFO] [stderr] Compiling rand_isaac v0.1.1 [INFO] [stderr] Compiling rand_hc v0.1.0 [INFO] [stderr] Compiling rand_xorshift v0.1.1 [INFO] [stderr] Compiling rand_jitter v0.1.3 [INFO] [stderr] Compiling bindgen v0.49.0 [INFO] [stderr] Compiling bitflags v1.0.4 [INFO] [stderr] Compiling matrixmultiply v0.1.15 [INFO] [stderr] Compiling yaml-rust v0.3.5 [INFO] [stderr] Compiling strsim v0.7.0 [INFO] [stderr] Compiling stable_deref_trait v1.1.1 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling owning_ref v0.4.0 [INFO] [stderr] Compiling cexpr v0.3.5 [INFO] [stderr] Compiling which v2.0.1 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling serde_derive v1.0.90 [INFO] [stderr] Compiling hashbrown v0.1.8 [INFO] [stderr] Compiling lzma-sys v0.1.14 [INFO] [stderr] Compiling libz-sys v1.0.25 [INFO] [stderr] Compiling bzip2-sys v0.1.7 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling shlex v0.1.1 [INFO] [stderr] Compiling num-complex v0.2.1 [INFO] [stderr] Compiling env_logger v0.6.1 [INFO] [stderr] Compiling matches v0.1.8 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling ryu v0.2.7 [INFO] [stderr] Compiling rawpointer v0.1.0 [INFO] [stderr] Compiling bv v0.10.0 [INFO] [stderr] Compiling unicode-bidi v0.3.4 [INFO] [stderr] Compiling lock_api v0.1.5 [INFO] [stderr] Compiling itertools v0.7.11 [INFO] [stderr] Compiling unicode-normalization v0.1.8 [INFO] [stderr] Compiling rand v0.4.6 [INFO] [stderr] Compiling fs-utils v1.1.0 [INFO] [stderr] Compiling num-integer v0.1.39 [INFO] [stderr] Compiling ndarray v0.12.1 [INFO] [stderr] Compiling parking_lot v0.7.1 [INFO] [stderr] Compiling idna v0.1.5 [INFO] [stderr] Compiling csv-core v0.1.5 [INFO] [stderr] Compiling termios v0.3.1 [INFO] [stderr] Compiling rand v0.3.23 [INFO] [stderr] Compiling clicolors-control v1.0.0 [INFO] [stderr] Compiling ndarray v0.11.2 [INFO] [stderr] Compiling bit-vec v0.5.1 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling itoa v0.4.3 [INFO] [stderr] Compiling bio v0.25.0 [INFO] [stderr] Compiling percent-encoding v1.0.1 [INFO] [stderr] Compiling bit-set v0.5.1 [INFO] [stderr] Compiling url v1.7.2 [INFO] [stderr] Compiling console v0.7.5 [INFO] [stderr] Compiling statrs v0.9.0 [INFO] [stderr] Compiling itertools v0.6.5 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling num-complex v0.1.43 [INFO] [stderr] Compiling ordered-float v1.0.2 [INFO] [stderr] Compiling approx v0.3.2 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling num-traits v0.1.43 [INFO] [stderr] Compiling number_prefix v0.2.8 [INFO] [stderr] Compiling bytecount v0.3.2 [INFO] [stderr] Compiling ieee754 v0.2.6 [INFO] [stderr] Compiling linear-map v1.2.0 [INFO] [stderr] Compiling fnv v1.0.6 [INFO] [stderr] Compiling bitflags v0.9.1 [INFO] [stderr] Compiling lazy_static v0.2.11 [INFO] [stderr] Compiling indicatif v0.11.0 [INFO] [stderr] Compiling env_logger v0.5.13 [INFO] [stderr] Compiling vec_map v0.8.1 [INFO] [stderr] Compiling bio-types v0.5.1 [INFO] [stderr] Compiling multimap v0.4.0 [INFO] [stderr] Compiling csv v1.0.7 [INFO] [stderr] Compiling clap v2.32.0 [INFO] [stderr] Compiling rust-htslib v0.22.1-alpha.0 (https://github.com/rust-bio/rust-htslib.git?rev=6a93aa473077c08aa52be0c2a89f1ee9d1c27609#6a93aa47) [INFO] [stderr] Compiling tcq v0.5.0-alpha.1 (/opt/rustwide/workdir) [INFO] [stdout] warning: unnecessary parentheses around assigned value [INFO] [stdout] --> src/spliced_read_utils.rs:100:29 [INFO] [stdout] | [INFO] [stdout] 100 | rpos += (l as i32); [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_parens)]` on by default [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 100 - rpos += (l as i32); [INFO] [stdout] 100 + rpos += l as i32; [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary parentheses around assigned value [INFO] [stdout] --> src/spliced_read_utils.rs:101:29 [INFO] [stdout] | [INFO] [stdout] 101 | qpos += (l as i32); [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 101 - qpos += (l as i32); [INFO] [stdout] 101 + qpos += l as i32; [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary parentheses around assigned value [INFO] [stdout] --> src/spliced_read_utils.rs:105:29 [INFO] [stdout] | [INFO] [stdout] 105 | qpos += (l as i32); [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 105 - qpos += (l as i32); [INFO] [stdout] 105 + qpos += l as i32; [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary parentheses around assigned value [INFO] [stdout] --> src/spliced_read_utils.rs:108:33 [INFO] [stdout] | [INFO] [stdout] 108 | rpos += (l as i32); [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 108 - rpos += (l as i32); [INFO] [stdout] 108 + rpos += l as i32; [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary parentheses around assigned value [INFO] [stdout] --> src/spliced_read_utils.rs:112:29 [INFO] [stdout] | [INFO] [stdout] 112 | qpos += (l as i32); [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 112 - qpos += (l as i32); [INFO] [stdout] 112 + qpos += l as i32; [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary parentheses around assigned value [INFO] [stdout] --> src/spliced_read_utils.rs:116:29 [INFO] [stdout] | [INFO] [stdout] 116 | rpos += (l as i32); [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 116 - rpos += (l as i32); [INFO] [stdout] 116 + rpos += l as i32; [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> src/handler.rs:207:1 [INFO] [stdout] | [INFO] [stdout] 207 | / quick_error! { [INFO] [stdout] 208 | | /// Error for T>>C count annotation. [INFO] [stdout] 209 | | #[derive(Debug, Clone)] [INFO] [stdout] 210 | | pub enum NascentMolError { [INFO] [stdout] ... | [INFO] [stdout] 215 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] = note: this warning originates in the macro `quick_error` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> src/filter.rs:79:1 [INFO] [stdout] | [INFO] [stdout] 79 | / quick_error! { [INFO] [stdout] 80 | | /// Errors if filter creation fails due to i/o or other file issue. [INFO] [stdout] 81 | | #[derive(Debug, Clone)] [INFO] [stdout] 82 | | pub enum ConvFilError { [INFO] [stdout] ... | [INFO] [stdout] 87 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `quick_error` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `is_r1` [INFO] [stdout] --> src/handler.rs:156:13 [INFO] [stdout] | [INFO] [stdout] 156 | let is_r1 = self.is_first_in_template() || !(self.is_paired()); [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_is_r1` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: static variable `foo_re` should have an upper case name [INFO] [stdout] --> src/handler.rs:53:24 [INFO] [stdout] | [INFO] [stdout] 53 | static ref foo_re: Regex = Regex::new(r"A").unwrap(); [INFO] [stdout] | ^^^^^^ help: convert the identifier to upper case: `FOO_RE` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_upper_case_globals)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: static variable `bar_re` should have an upper case name [INFO] [stdout] --> src/handler.rs:54:24 [INFO] [stdout] | [INFO] [stdout] 54 | static ref bar_re: Regex = Regex::new(r"T").unwrap(); [INFO] [stdout] | ^^^^^^ help: convert the identifier to upper case: `BAR_RE` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: static variable `forward_re` should have an upper case name [INFO] [stdout] --> src/handler.rs:82:24 [INFO] [stdout] | [INFO] [stdout] 82 | static ref forward_re: Regex = Regex::new(r"T").unwrap(); [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to upper case: `FORWARD_RE` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: static variable `reverse_re` should have an upper case name [INFO] [stdout] --> src/handler.rs:83:24 [INFO] [stdout] | [INFO] [stdout] 83 | static ref reverse_re: Regex = Regex::new(r"A").unwrap(); [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to upper case: `REVERSE_RE` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: static variable `re_perf` should have an upper case name [INFO] [stdout] --> src/expander.rs:13:20 [INFO] [stdout] | [INFO] [stdout] 13 | static ref re_perf: Regex = Regex::new(r"\d+").unwrap(); [INFO] [stdout] | ^^^^^^^ help: convert the identifier to upper case: `RE_PERF` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: static variable `re_del` should have an upper case name [INFO] [stdout] --> src/expander.rs:45:20 [INFO] [stdout] | [INFO] [stdout] 45 | static ref re_del: Regex = Regex::new(r"\^\D+").unwrap(); [INFO] [stdout] | ^^^^^^ help: convert the identifier to upper case: `RE_DEL` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `ArgGroup` [INFO] [stdout] --> src/main.rs:15:26 [INFO] [stdout] | [INFO] [stdout] 15 | use clap::{App, Arg, ArgGroup}; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `tcq::handler` [INFO] [stdout] --> src/main.rs:16:9 [INFO] [stdout] | [INFO] [stdout] 16 | use tcq::handler; [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 32s [INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: cexpr v0.3.5, nom v4.2.3 [INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1` [INFO] running `Command { std: "docker" "inspect" "63023e3c777fd2390be6aa7f383cd3130e352aeb74d6167c97ece74fa8c89ab7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "63023e3c777fd2390be6aa7f383cd3130e352aeb74d6167c97ece74fa8c89ab7", kill_on_drop: false }` [INFO] [stdout] 63023e3c777fd2390be6aa7f383cd3130e352aeb74d6167c97ece74fa8c89ab7 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3959728d45483eb673ba100a951a6b9f5012970368db2a9e08e0ac9b67c8a5ad" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-02-18" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 28cfd0856671d13f5f327178d85e75141d63e6656fb2bcd85ccaf843bb497061 [INFO] running `Command { std: "docker" "start" "-a" "28cfd0856671d13f5f327178d85e75141d63e6656fb2bcd85ccaf843bb497061", kill_on_drop: false }` [INFO] [stderr] warning: no edition set: defaulting to the 2015 edition while the latest is 2024 [INFO] [stderr] Compiling arrayvec v0.4.10 [INFO] [stderr] Compiling nodrop v0.1.13 [INFO] [stderr] Compiling crossbeam-utils v0.2.2 [INFO] [stderr] Compiling rayon-core v1.4.1 [INFO] [stderr] Compiling memoffset v0.2.1 [INFO] [stderr] Compiling num_cpus v1.10.0 [INFO] [stderr] Compiling rayon v1.0.3 [INFO] [stderr] Compiling serde_json v1.0.39 [INFO] [stderr] Compiling itertools v0.8.0 [INFO] [stderr] Compiling cast v0.2.2 [INFO] [stderr] Compiling same-file v1.0.4 [INFO] [stderr] Compiling walkdir v2.2.7 [INFO] [stderr] Compiling rand_xoshiro v0.1.0 [INFO] [stdout] warning: unnecessary parentheses around assigned value [INFO] [stdout] --> src/spliced_read_utils.rs:100:29 [INFO] [stdout] | [INFO] [stdout] 100 | rpos += (l as i32); [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_parens)]` on by default [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 100 - rpos += (l as i32); [INFO] [stdout] 100 + rpos += l as i32; [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary parentheses around assigned value [INFO] [stdout] --> src/spliced_read_utils.rs:101:29 [INFO] [stdout] | [INFO] [stdout] 101 | qpos += (l as i32); [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 101 - qpos += (l as i32); [INFO] [stdout] 101 + qpos += l as i32; [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary parentheses around assigned value [INFO] [stdout] --> src/spliced_read_utils.rs:105:29 [INFO] [stdout] | [INFO] [stdout] 105 | qpos += (l as i32); [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 105 - qpos += (l as i32); [INFO] [stdout] 105 + qpos += l as i32; [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary parentheses around assigned value [INFO] [stdout] --> src/spliced_read_utils.rs:108:33 [INFO] [stdout] | [INFO] [stdout] 108 | rpos += (l as i32); [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 108 - rpos += (l as i32); [INFO] [stdout] 108 + rpos += l as i32; [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary parentheses around assigned value [INFO] [stdout] --> src/spliced_read_utils.rs:112:29 [INFO] [stdout] | [INFO] [stdout] 112 | qpos += (l as i32); [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 112 - qpos += (l as i32); [INFO] [stdout] 112 + qpos += l as i32; [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary parentheses around assigned value [INFO] [stdout] --> src/spliced_read_utils.rs:116:29 [INFO] [stdout] | [INFO] [stdout] 116 | rpos += (l as i32); [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 116 - rpos += (l as i32); [INFO] [stdout] 116 + rpos += l as i32; [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> src/handler.rs:207:1 [INFO] [stdout] | [INFO] [stdout] 207 | / quick_error! { [INFO] [stdout] 208 | | /// Error for T>>C count annotation. [INFO] [stdout] 209 | | #[derive(Debug, Clone)] [INFO] [stdout] 210 | | pub enum NascentMolError { [INFO] [stdout] ... | [INFO] [stdout] 215 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] = note: this warning originates in the macro `quick_error` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> src/filter.rs:79:1 [INFO] [stdout] | [INFO] [stdout] 79 | / quick_error! { [INFO] [stdout] 80 | | /// Errors if filter creation fails due to i/o or other file issue. [INFO] [stdout] 81 | | #[derive(Debug, Clone)] [INFO] [stdout] 82 | | pub enum ConvFilError { [INFO] [stdout] ... | [INFO] [stdout] 87 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `quick_error` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `is_r1` [INFO] [stdout] --> src/handler.rs:156:13 [INFO] [stdout] | [INFO] [stdout] 156 | let is_r1 = self.is_first_in_template() || !(self.is_paired()); [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_is_r1` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: static variable `foo_re` should have an upper case name [INFO] [stdout] --> src/handler.rs:53:24 [INFO] [stdout] | [INFO] [stdout] 53 | static ref foo_re: Regex = Regex::new(r"A").unwrap(); [INFO] [stdout] | ^^^^^^ help: convert the identifier to upper case: `FOO_RE` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_upper_case_globals)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: static variable `bar_re` should have an upper case name [INFO] [stdout] --> src/handler.rs:54:24 [INFO] [stdout] | [INFO] [stdout] 54 | static ref bar_re: Regex = Regex::new(r"T").unwrap(); [INFO] [stdout] | ^^^^^^ help: convert the identifier to upper case: `BAR_RE` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: static variable `forward_re` should have an upper case name [INFO] [stdout] --> src/handler.rs:82:24 [INFO] [stdout] | [INFO] [stdout] 82 | static ref forward_re: Regex = Regex::new(r"T").unwrap(); [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to upper case: `FORWARD_RE` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: static variable `reverse_re` should have an upper case name [INFO] [stdout] --> src/handler.rs:83:24 [INFO] [stdout] | [INFO] [stdout] 83 | static ref reverse_re: Regex = Regex::new(r"A").unwrap(); [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to upper case: `REVERSE_RE` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: static variable `re_perf` should have an upper case name [INFO] [stdout] --> src/expander.rs:13:20 [INFO] [stdout] | [INFO] [stdout] 13 | static ref re_perf: Regex = Regex::new(r"\d+").unwrap(); [INFO] [stdout] | ^^^^^^^ help: convert the identifier to upper case: `RE_PERF` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: static variable `re_del` should have an upper case name [INFO] [stdout] --> src/expander.rs:45:20 [INFO] [stdout] | [INFO] [stdout] 45 | static ref re_del: Regex = Regex::new(r"\^\D+").unwrap(); [INFO] [stdout] | ^^^^^^ help: convert the identifier to upper case: `RE_DEL` [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling crossbeam-epoch v0.3.1 [INFO] [stderr] Compiling criterion-plot v0.3.1 [INFO] [stderr] Compiling crossbeam-deque v0.2.0 [INFO] [stderr] Compiling tinytemplate v1.0.1 [INFO] [stderr] Compiling criterion v0.2.11 [INFO] [stderr] Compiling tcq v0.5.0-alpha.1 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `ArgGroup` [INFO] [stdout] --> src/main.rs:15:26 [INFO] [stdout] | [INFO] [stdout] 15 | use clap::{App, Arg, ArgGroup}; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `tcq::handler` [INFO] [stdout] --> src/main.rs:16:9 [INFO] [stdout] | [INFO] [stdout] 16 | use tcq::handler; [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary parentheses around assigned value [INFO] [stdout] --> src/spliced_read_utils.rs:100:29 [INFO] [stdout] | [INFO] [stdout] 100 | rpos += (l as i32); [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_parens)]` on by default [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 100 - rpos += (l as i32); [INFO] [stdout] 100 + rpos += l as i32; [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary parentheses around assigned value [INFO] [stdout] --> src/spliced_read_utils.rs:101:29 [INFO] [stdout] | [INFO] [stdout] 101 | qpos += (l as i32); [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 101 - qpos += (l as i32); [INFO] [stdout] 101 + qpos += l as i32; [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary parentheses around assigned value [INFO] [stdout] --> src/spliced_read_utils.rs:105:29 [INFO] [stdout] | [INFO] [stdout] 105 | qpos += (l as i32); [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 105 - qpos += (l as i32); [INFO] [stdout] 105 + qpos += l as i32; [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary parentheses around assigned value [INFO] [stdout] --> src/spliced_read_utils.rs:108:33 [INFO] [stdout] | [INFO] [stdout] 108 | rpos += (l as i32); [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 108 - rpos += (l as i32); [INFO] [stdout] 108 + rpos += l as i32; [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary parentheses around assigned value [INFO] [stdout] --> src/spliced_read_utils.rs:112:29 [INFO] [stdout] | [INFO] [stdout] 112 | qpos += (l as i32); [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 112 - qpos += (l as i32); [INFO] [stdout] 112 + qpos += l as i32; [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary parentheses around assigned value [INFO] [stdout] --> src/spliced_read_utils.rs:116:29 [INFO] [stdout] | [INFO] [stdout] 116 | rpos += (l as i32); [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 116 - rpos += (l as i32); [INFO] [stdout] 116 + rpos += l as i32; [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> src/handler.rs:207:1 [INFO] [stdout] | [INFO] [stdout] 207 | / quick_error! { [INFO] [stdout] 208 | | /// Error for T>>C count annotation. [INFO] [stdout] 209 | | #[derive(Debug, Clone)] [INFO] [stdout] 210 | | pub enum NascentMolError { [INFO] [stdout] ... | [INFO] [stdout] 215 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] = note: this warning originates in the macro `quick_error` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string() [INFO] [stdout] --> src/filter.rs:79:1 [INFO] [stdout] | [INFO] [stdout] 79 | / quick_error! { [INFO] [stdout] 80 | | /// Errors if filter creation fails due to i/o or other file issue. [INFO] [stdout] 81 | | #[derive(Debug, Clone)] [INFO] [stdout] 82 | | pub enum ConvFilError { [INFO] [stdout] ... | [INFO] [stdout] 87 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `quick_error` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `is_r1` [INFO] [stdout] --> src/handler.rs:156:13 [INFO] [stdout] | [INFO] [stdout] 156 | let is_r1 = self.is_first_in_template() || !(self.is_paired()); [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_is_r1` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: static variable `foo_re` should have an upper case name [INFO] [stdout] --> src/handler.rs:53:24 [INFO] [stdout] | [INFO] [stdout] 53 | static ref foo_re: Regex = Regex::new(r"A").unwrap(); [INFO] [stdout] | ^^^^^^ help: convert the identifier to upper case: `FOO_RE` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_upper_case_globals)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: static variable `bar_re` should have an upper case name [INFO] [stdout] --> src/handler.rs:54:24 [INFO] [stdout] | [INFO] [stdout] 54 | static ref bar_re: Regex = Regex::new(r"T").unwrap(); [INFO] [stdout] | ^^^^^^ help: convert the identifier to upper case: `BAR_RE` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: static variable `forward_re` should have an upper case name [INFO] [stdout] --> src/handler.rs:82:24 [INFO] [stdout] | [INFO] [stdout] 82 | static ref forward_re: Regex = Regex::new(r"T").unwrap(); [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to upper case: `FORWARD_RE` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: static variable `reverse_re` should have an upper case name [INFO] [stdout] --> src/handler.rs:83:24 [INFO] [stdout] | [INFO] [stdout] 83 | static ref reverse_re: Regex = Regex::new(r"A").unwrap(); [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to upper case: `REVERSE_RE` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: static variable `re_perf` should have an upper case name [INFO] [stdout] --> src/expander.rs:13:20 [INFO] [stdout] | [INFO] [stdout] 13 | static ref re_perf: Regex = Regex::new(r"\d+").unwrap(); [INFO] [stdout] | ^^^^^^^ help: convert the identifier to upper case: `RE_PERF` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: static variable `re_del` should have an upper case name [INFO] [stdout] --> src/expander.rs:45:20 [INFO] [stdout] | [INFO] [stdout] 45 | static ref re_del: Regex = Regex::new(r"\^\D+").unwrap(); [INFO] [stdout] | ^^^^^^ help: convert the identifier to upper case: `RE_DEL` [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 14.34s [INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: cexpr v0.3.5, criterion v0.2.11, nom v4.2.3 [INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 2` [INFO] running `Command { std: "docker" "inspect" "28cfd0856671d13f5f327178d85e75141d63e6656fb2bcd85ccaf843bb497061", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "28cfd0856671d13f5f327178d85e75141d63e6656fb2bcd85ccaf843bb497061", kill_on_drop: false }` [INFO] [stdout] 28cfd0856671d13f5f327178d85e75141d63e6656fb2bcd85ccaf843bb497061 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3959728d45483eb673ba100a951a6b9f5012970368db2a9e08e0ac9b67c8a5ad" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-02-18" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 2bca44c12c6ed49111037d509be96e8b337f6decf60aeeb51db209b72a215076 [INFO] running `Command { std: "docker" "start" "-a" "2bca44c12c6ed49111037d509be96e8b337f6decf60aeeb51db209b72a215076", kill_on_drop: false }` [INFO] [stderr] warning: no edition set: defaulting to the 2015 edition while the latest is 2024 [INFO] [stderr] warning: unnecessary parentheses around assigned value [INFO] [stderr] --> src/spliced_read_utils.rs:100:29 [INFO] [stderr] | [INFO] [stderr] 100 | rpos += (l as i32); [INFO] [stderr] | ^ ^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_parens)]` on by default [INFO] [stderr] help: remove these parentheses [INFO] [stderr] | [INFO] [stderr] 100 - rpos += (l as i32); [INFO] [stderr] 100 + rpos += l as i32; [INFO] [stderr] | [INFO] [stderr] [INFO] [stderr] warning: unnecessary parentheses around assigned value [INFO] [stderr] --> src/spliced_read_utils.rs:101:29 [INFO] [stderr] | [INFO] [stderr] 101 | qpos += (l as i32); [INFO] [stderr] | ^ ^ [INFO] [stderr] | [INFO] [stderr] help: remove these parentheses [INFO] [stderr] | [INFO] [stderr] 101 - qpos += (l as i32); [INFO] [stderr] 101 + qpos += l as i32; [INFO] [stderr] | [INFO] [stderr] [INFO] [stderr] warning: unnecessary parentheses around assigned value [INFO] [stderr] --> src/spliced_read_utils.rs:105:29 [INFO] [stderr] | [INFO] [stderr] 105 | qpos += (l as i32); [INFO] [stderr] | ^ ^ [INFO] [stderr] | [INFO] [stderr] help: remove these parentheses [INFO] [stderr] | [INFO] [stderr] 105 - qpos += (l as i32); [INFO] [stderr] 105 + qpos += l as i32; [INFO] [stderr] | [INFO] [stderr] [INFO] [stderr] warning: unnecessary parentheses around assigned value [INFO] [stderr] --> src/spliced_read_utils.rs:108:33 [INFO] [stderr] | [INFO] [stderr] 108 | rpos += (l as i32); [INFO] [stderr] | ^ ^ [INFO] [stderr] | [INFO] [stderr] help: remove these parentheses [INFO] [stderr] | [INFO] [stderr] 108 - rpos += (l as i32); [INFO] [stderr] 108 + rpos += l as i32; [INFO] [stderr] | [INFO] [stderr] [INFO] [stderr] warning: unnecessary parentheses around assigned value [INFO] [stderr] --> src/spliced_read_utils.rs:112:29 [INFO] [stderr] | [INFO] [stderr] 112 | qpos += (l as i32); [INFO] [stderr] | ^ ^ [INFO] [stderr] | [INFO] [stderr] help: remove these parentheses [INFO] [stderr] | [INFO] [stderr] 112 - qpos += (l as i32); [INFO] [stderr] 112 + qpos += l as i32; [INFO] [stderr] | [INFO] [stderr] [INFO] [stderr] warning: unnecessary parentheses around assigned value [INFO] [stderr] --> src/spliced_read_utils.rs:116:29 [INFO] [stderr] | [INFO] [stderr] 116 | rpos += (l as i32); [INFO] [stderr] | ^ ^ [INFO] [stderr] | [INFO] [stderr] help: remove these parentheses [INFO] [stderr] | [INFO] [stderr] 116 - rpos += (l as i32); [INFO] [stderr] 116 + rpos += l as i32; [INFO] [stderr] | [INFO] [stderr] [INFO] [stderr] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string() [INFO] [stderr] --> src/handler.rs:207:1 [INFO] [stderr] | [INFO] [stderr] 207 | / quick_error! { [INFO] [stderr] 208 | | /// Error for T>>C count annotation. [INFO] [stderr] 209 | | #[derive(Debug, Clone)] [INFO] [stderr] 210 | | pub enum NascentMolError { [INFO] [stderr] ... | [INFO] [stderr] 215 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] = note: this warning originates in the macro `quick_error` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: use of deprecated method `std::error::Error::description`: use the Display impl or to_string() [INFO] [stderr] --> src/filter.rs:79:1 [INFO] [stderr] | [INFO] [stderr] 79 | / quick_error! { [INFO] [stderr] 80 | | /// Errors if filter creation fails due to i/o or other file issue. [INFO] [stderr] 81 | | #[derive(Debug, Clone)] [INFO] [stderr] 82 | | pub enum ConvFilError { [INFO] [stderr] ... | [INFO] [stderr] 87 | | } [INFO] [stderr] | |_^ [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in the macro `quick_error` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] [INFO] [stderr] warning: unused variable: `is_r1` [INFO] [stderr] --> src/handler.rs:156:13 [INFO] [stderr] | [INFO] [stderr] 156 | let is_r1 = self.is_first_in_template() || !(self.is_paired()); [INFO] [stderr] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_is_r1` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_variables)]` on by default [INFO] [stderr] [INFO] [stderr] warning: static variable `foo_re` should have an upper case name [INFO] [stderr] --> src/handler.rs:53:24 [INFO] [stderr] | [INFO] [stderr] 53 | static ref foo_re: Regex = Regex::new(r"A").unwrap(); [INFO] [stderr] | ^^^^^^ help: convert the identifier to upper case: `FOO_RE` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(non_upper_case_globals)]` on by default [INFO] [stderr] [INFO] [stderr] warning: static variable `bar_re` should have an upper case name [INFO] [stderr] --> src/handler.rs:54:24 [INFO] [stderr] | [INFO] [stderr] 54 | static ref bar_re: Regex = Regex::new(r"T").unwrap(); [INFO] [stderr] | ^^^^^^ help: convert the identifier to upper case: `BAR_RE` [INFO] [stderr] [INFO] [stderr] warning: static variable `forward_re` should have an upper case name [INFO] [stderr] --> src/handler.rs:82:24 [INFO] [stderr] | [INFO] [stderr] 82 | static ref forward_re: Regex = Regex::new(r"T").unwrap(); [INFO] [stderr] | ^^^^^^^^^^ help: convert the identifier to upper case: `FORWARD_RE` [INFO] [stderr] [INFO] [stderr] warning: static variable `reverse_re` should have an upper case name [INFO] [stderr] --> src/handler.rs:83:24 [INFO] [stderr] | [INFO] [stderr] 83 | static ref reverse_re: Regex = Regex::new(r"A").unwrap(); [INFO] [stderr] | ^^^^^^^^^^ help: convert the identifier to upper case: `REVERSE_RE` [INFO] [stderr] [INFO] [stderr] warning: static variable `re_perf` should have an upper case name [INFO] [stderr] --> src/expander.rs:13:20 [INFO] [stderr] | [INFO] [stderr] 13 | static ref re_perf: Regex = Regex::new(r"\d+").unwrap(); [INFO] [stderr] | ^^^^^^^ help: convert the identifier to upper case: `RE_PERF` [INFO] [stderr] [INFO] [stderr] warning: static variable `re_del` should have an upper case name [INFO] [stderr] --> src/expander.rs:45:20 [INFO] [stderr] | [INFO] [stderr] 45 | static ref re_del: Regex = Regex::new(r"\^\D+").unwrap(); [INFO] [stderr] | ^^^^^^ help: convert the identifier to upper case: `RE_DEL` [INFO] [stderr] [INFO] [stderr] warning: `tcq` (lib) generated 15 warnings (run `cargo fix --lib -p tcq` to apply 6 suggestions) [INFO] [stderr] warning: unused import: `ArgGroup` [INFO] [stderr] --> src/main.rs:15:26 [INFO] [stderr] | [INFO] [stderr] 15 | use clap::{App, Arg, ArgGroup}; [INFO] [stderr] | ^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused import: `tcq::handler` [INFO] [stderr] --> src/main.rs:16:9 [INFO] [stderr] | [INFO] [stderr] 16 | use tcq::handler; [INFO] [stderr] | ^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: `tcq` (bin "tcq" test) generated 2 warnings (run `cargo fix --bin "tcq" --tests` to apply 2 suggestions) [INFO] [stderr] warning: `tcq` (lib test) generated 15 warnings (15 duplicates) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.21s [INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: cexpr v0.3.5, criterion v0.2.11, nom v4.2.3 [INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 2` [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/tcq-da9796f82eaab080) [INFO] [stdout] [INFO] [stdout] running 6 tests [INFO] [stdout] test handler::tests::forward_read_intron ... ok [INFO] [stdout] test handler::tests::forward_read_insertions ... ok [INFO] [stdout] test handler::tests::forward_read_deletions ... ok [INFO] [stdout] test handler::tests::rev_read_deletions ... ok [INFO] [stdout] test handler::tests::rev_read_intron ... ok [INFO] [stdout] test handler::tests::rev_read_insertions ... ok [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/debug/deps/tcq-c6dfb8f49134da23) [INFO] [stdout] [INFO] [stdout] test result: ok. 6 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests tcq [INFO] [stderr] warning: unnecessary parentheses around assigned value [INFO] [stderr] --> src/spliced_read_utils.rs:100:29 [INFO] [stderr] | [INFO] [stderr] 100 | rpos += (l as i32); [INFO] [stderr] | ^ ^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_parens)]` on by default [INFO] [stderr] help: remove these parentheses [INFO] [stderr] | [INFO] [stderr] 100 - rpos += (l as i32); [INFO] [stderr] 100 + rpos += l as i32; [INFO] [stderr] | [INFO] [stderr] [INFO] [stderr] warning: unnecessary parentheses around assigned value [INFO] [stderr] --> src/spliced_read_utils.rs:101:29 [INFO] [stderr] | [INFO] [stderr] 101 | qpos += (l as i32); [INFO] [stderr] | ^ ^ [INFO] [stderr] | [INFO] [stderr] help: remove these parentheses [INFO] [stderr] | [INFO] [stderr] 101 - qpos += (l as i32); [INFO] [stderr] 101 + qpos += l as i32; [INFO] [stderr] | [INFO] [stderr] [INFO] [stderr] warning: unnecessary parentheses around assigned value [INFO] [stderr] --> src/spliced_read_utils.rs:105:29 [INFO] [stderr] | [INFO] [stderr] 105 | qpos += (l as i32); [INFO] [stderr] | ^ ^ [INFO] [stderr] | [INFO] [stderr] help: remove these parentheses [INFO] [stderr] | [INFO] [stderr] 105 - qpos += (l as i32); [INFO] [stderr] 105 + qpos += l as i32; [INFO] [stderr] | [INFO] [stderr] [INFO] [stderr] warning: unnecessary parentheses around assigned value [INFO] [stderr] --> src/spliced_read_utils.rs:108:33 [INFO] [stderr] | [INFO] [stderr] 108 | rpos += (l as i32); [INFO] [stderr] | ^ ^ [INFO] [stderr] | [INFO] [stderr] help: remove these parentheses [INFO] [stderr] | [INFO] [stderr] 108 - rpos += (l as i32); [INFO] [stderr] 108 + rpos += l as i32; [INFO] [stderr] | [INFO] [stderr] [INFO] [stderr] warning: unnecessary parentheses around assigned value [INFO] [stderr] --> src/spliced_read_utils.rs:112:29 [INFO] [stderr] | [INFO] [stderr] 112 | qpos += (l as i32); [INFO] [stderr] | ^ ^ [INFO] [stderr] | [INFO] [stderr] help: remove these parentheses [INFO] [stderr] | [INFO] [stderr] 112 - qpos += (l as i32); [INFO] [stderr] 112 + qpos += l as i32; [INFO] [stderr] | [INFO] [stderr] [INFO] [stderr] warning: unnecessary parentheses around assigned value [INFO] [stderr] --> src/spliced_read_utils.rs:116:29 [INFO] [stderr] | [INFO] [stderr] 116 | rpos += (l as i32); [INFO] [stderr] | ^ ^ [INFO] [stderr] | [INFO] [stderr] help: remove these parentheses [INFO] [stderr] | [INFO] [stderr] 116 - rpos += (l as i32); [INFO] [stderr] 116 + rpos += l as i32; [INFO] [stderr] | [INFO] [stderr] [INFO] [stderr] warning: 6 warnings emitted [INFO] [stderr] [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stdout] test src/runner.rs - runner::run_through_bam (line 21) - compile ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.12s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "2bca44c12c6ed49111037d509be96e8b337f6decf60aeeb51db209b72a215076", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2bca44c12c6ed49111037d509be96e8b337f6decf60aeeb51db209b72a215076", kill_on_drop: false }` [INFO] [stdout] 2bca44c12c6ed49111037d509be96e8b337f6decf60aeeb51db209b72a215076