[INFO] cloning repository https://github.com/hurwitzlab/kmer_frequencies [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/hurwitzlab/kmer_frequencies" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fhurwitzlab%2Fkmer_frequencies", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fhurwitzlab%2Fkmer_frequencies'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] a3e829692619ac06cd67090afc64be3198e494c0 [INFO] testing hurwitzlab/kmer_frequencies against 1.85.0 for beta-1.86-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fhurwitzlab%2Fkmer_frequencies" "/workspace/builds/worker-2-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc1/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/hurwitzlab/kmer_frequencies on toolchain 1.85.0 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.85.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/hurwitzlab/kmer_frequencies [INFO] finished tweaking git repo https://github.com/hurwitzlab/kmer_frequencies [INFO] tweaked toml for git repo https://github.com/hurwitzlab/kmer_frequencies written to /workspace/builds/worker-2-tc1/source/Cargo.toml [INFO] crate git repo https://github.com/hurwitzlab/kmer_frequencies already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.85.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] warning: no edition set: defaulting to the 2015 edition while the latest is 2024 [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded bv v0.7.4 [INFO] [stderr] Downloaded bio-types v0.2.0 [INFO] [stderr] Downloaded bytecount v0.3.2 [INFO] [stderr] Downloaded itertools-num v0.1.1 [INFO] [stderr] Downloaded statrs v0.9.0 [INFO] [stderr] Downloaded csv v1.0.0 [INFO] [stderr] Downloaded bio v0.22.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3959728d45483eb673ba100a951a6b9f5012970368db2a9e08e0ac9b67c8a5ad" "/opt/rustwide/cargo-home/bin/cargo" "+1.85.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 50bb76464ad8550d7e10c138a286a0309d56b5c978e3d015a19bb4b9cbff8891 [INFO] running `Command { std: "docker" "start" "-a" "50bb76464ad8550d7e10c138a286a0309d56b5c978e3d015a19bb4b9cbff8891", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "50bb76464ad8550d7e10c138a286a0309d56b5c978e3d015a19bb4b9cbff8891", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "50bb76464ad8550d7e10c138a286a0309d56b5c978e3d015a19bb4b9cbff8891", kill_on_drop: false }` [INFO] [stdout] 50bb76464ad8550d7e10c138a286a0309d56b5c978e3d015a19bb4b9cbff8891 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3959728d45483eb673ba100a951a6b9f5012970368db2a9e08e0ac9b67c8a5ad" "/opt/rustwide/cargo-home/bin/cargo" "+1.85.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] ce0dc236dc8ecc25f456d23adc92cebb1406e063e25440c68fc8bc42e8d190c0 [INFO] running `Command { std: "docker" "start" "-a" "ce0dc236dc8ecc25f456d23adc92cebb1406e063e25440c68fc8bc42e8d190c0", kill_on_drop: false }` [INFO] [stderr] warning: no edition set: defaulting to the 2015 edition while the latest is 2024 [INFO] [stderr] Compiling proc-macro2 v0.4.13 [INFO] [stderr] Compiling unicode-xid v0.1.0 [INFO] [stderr] Compiling libc v0.2.43 [INFO] [stderr] Compiling serde v1.0.72 [INFO] [stderr] Compiling num-traits v0.2.5 [INFO] [stderr] Compiling version_check v0.1.4 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling either v1.5.0 [INFO] [stderr] Compiling matrixmultiply v0.1.14 [INFO] [stderr] Compiling rawpointer v0.1.0 [INFO] [stderr] Compiling bv v0.7.4 [INFO] [stderr] Compiling ndarray v0.9.1 [INFO] [stderr] Compiling num-integer v0.1.39 [INFO] [stderr] Compiling ucd-util v0.1.1 [INFO] [stderr] Compiling void v1.0.2 [INFO] [stderr] Compiling regex v0.2.11 [INFO] [stderr] Compiling regex-syntax v0.5.6 [INFO] [stderr] Compiling itertools v0.6.5 [INFO] [stderr] Compiling unreachable v0.1.1 [INFO] [stderr] Compiling utf8-ranges v1.0.0 [INFO] [stderr] Compiling bit-vec v0.4.4 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling unicode-width v0.1.5 [INFO] [stderr] Compiling byteorder v1.2.4 [INFO] [stderr] Compiling textwrap v0.10.0 [INFO] [stderr] Compiling bytecount v0.3.2 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling lazy_static v1.1.0 [INFO] [stderr] Compiling bitflags v1.0.4 [INFO] [stderr] Compiling strsim v0.7.0 [INFO] [stderr] Compiling approx v0.1.1 [INFO] [stderr] Compiling quick-error v1.2.2 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling lazy_static v0.2.11 [INFO] [stderr] Compiling bit-set v0.4.0 [INFO] [stderr] Compiling itertools v0.7.8 [INFO] [stderr] Compiling memchr v2.0.1 [INFO] [stderr] Compiling rand v0.4.3 [INFO] [stderr] Compiling atty v0.2.11 [INFO] [stderr] Compiling quote v0.6.6 [INFO] [stderr] Compiling syn v0.14.9 [INFO] [stderr] Compiling num-traits v0.1.43 [INFO] [stderr] Compiling num-complex v0.1.43 [INFO] [stderr] Compiling aho-corasick v0.6.6 [INFO] [stderr] Compiling csv-core v0.1.4 [INFO] [stderr] Compiling ordered-float v0.5.0 [INFO] [stderr] Compiling itertools-num v0.1.1 [INFO] [stderr] Compiling thread_local v0.3.6 [INFO] [stderr] Compiling rand v0.3.22 [INFO] [stderr] Compiling statrs v0.9.0 [INFO] [stderr] Compiling serde_derive v1.0.72 [INFO] [stderr] Compiling vec_map v0.8.1 [INFO] [stderr] Compiling bio-types v0.2.0 [INFO] [stderr] Compiling multimap v0.4.0 [INFO] [stderr] Compiling csv v1.0.0 [INFO] [stderr] Compiling clap v2.32.0 [INFO] [stderr] Compiling bio v0.22.0 [INFO] [stderr] Compiling kmer_frequencies v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/lib.rs:15:34 [INFO] [stdout] | [INFO] [stdout] 15 | type MyResult = Result>; [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stdout] help: if this is a dyn-compatible trait, use `dyn` [INFO] [stdout] | [INFO] [stdout] 15 | type MyResult = Result>; [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `format` and `out_dir` are never read [INFO] [stdout] --> src/lib.rs:27:5 [INFO] [stdout] | [INFO] [stdout] 25 | pub struct Config { [INFO] [stdout] | ------ fields in this struct [INFO] [stdout] 26 | input_file: String, [INFO] [stdout] 27 | format: Option, [INFO] [stdout] | ^^^^^^ [INFO] [stdout] 28 | out_dir: PathBuf, [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `Config` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 21.90s [INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: syn v0.14.9 [INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1` [INFO] running `Command { std: "docker" "inspect" "ce0dc236dc8ecc25f456d23adc92cebb1406e063e25440c68fc8bc42e8d190c0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ce0dc236dc8ecc25f456d23adc92cebb1406e063e25440c68fc8bc42e8d190c0", kill_on_drop: false }` [INFO] [stdout] ce0dc236dc8ecc25f456d23adc92cebb1406e063e25440c68fc8bc42e8d190c0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3959728d45483eb673ba100a951a6b9f5012970368db2a9e08e0ac9b67c8a5ad" "/opt/rustwide/cargo-home/bin/cargo" "+1.85.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 7c46e44c836ad396a798bf575a6a91fc5b0110679f3dbb8045af8b74ad19de2b [INFO] running `Command { std: "docker" "start" "-a" "7c46e44c836ad396a798bf575a6a91fc5b0110679f3dbb8045af8b74ad19de2b", kill_on_drop: false }` [INFO] [stderr] warning: no edition set: defaulting to the 2015 edition while the latest is 2024 [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/lib.rs:15:34 [INFO] [stdout] | [INFO] [stdout] 15 | type MyResult = Result>; [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stdout] help: if this is a dyn-compatible trait, use `dyn` [INFO] [stdout] | [INFO] [stdout] 15 | type MyResult = Result>; [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `format` and `out_dir` are never read [INFO] [stdout] --> src/lib.rs:27:5 [INFO] [stdout] | [INFO] [stdout] 25 | pub struct Config { [INFO] [stdout] | ------ fields in this struct [INFO] [stdout] 26 | input_file: String, [INFO] [stdout] 27 | format: Option, [INFO] [stdout] | ^^^^^^ [INFO] [stdout] 28 | out_dir: PathBuf, [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `Config` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling kmer_frequencies v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stdout] --> src/lib.rs:15:34 [INFO] [stdout] | [INFO] [stdout] 15 | type MyResult = Result>; [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stdout] = note: for more information, see [INFO] [stdout] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stdout] help: if this is a dyn-compatible trait, use `dyn` [INFO] [stdout] | [INFO] [stdout] 15 | type MyResult = Result>; [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `format` and `out_dir` are never read [INFO] [stdout] --> src/lib.rs:27:5 [INFO] [stdout] | [INFO] [stdout] 25 | pub struct Config { [INFO] [stdout] | ------ fields in this struct [INFO] [stdout] 26 | input_file: String, [INFO] [stdout] 27 | format: Option, [INFO] [stdout] | ^^^^^^ [INFO] [stdout] 28 | out_dir: PathBuf, [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `Config` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.73s [INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: syn v0.14.9 [INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1` [INFO] running `Command { std: "docker" "inspect" "7c46e44c836ad396a798bf575a6a91fc5b0110679f3dbb8045af8b74ad19de2b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7c46e44c836ad396a798bf575a6a91fc5b0110679f3dbb8045af8b74ad19de2b", kill_on_drop: false }` [INFO] [stdout] 7c46e44c836ad396a798bf575a6a91fc5b0110679f3dbb8045af8b74ad19de2b [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3959728d45483eb673ba100a951a6b9f5012970368db2a9e08e0ac9b67c8a5ad" "/opt/rustwide/cargo-home/bin/cargo" "+1.85.0" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] baec62e737461b28ee5f03906842860e3325afeff00c62065e15824c20551919 [INFO] running `Command { std: "docker" "start" "-a" "baec62e737461b28ee5f03906842860e3325afeff00c62065e15824c20551919", kill_on_drop: false }` [INFO] [stderr] warning: no edition set: defaulting to the 2015 edition while the latest is 2024 [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/lib.rs:15:34 [INFO] [stderr] | [INFO] [stderr] 15 | type MyResult = Result>; [INFO] [stderr] | ^^^^^ [INFO] [stderr] | [INFO] [stderr] = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021! [INFO] [stderr] = note: for more information, see [INFO] [stderr] = note: `#[warn(bare_trait_objects)]` on by default [INFO] [stderr] help: if this is a dyn-compatible trait, use `dyn` [INFO] [stderr] | [INFO] [stderr] 15 | type MyResult = Result>; [INFO] [stderr] | +++ [INFO] [stderr] [INFO] [stderr] warning: fields `format` and `out_dir` are never read [INFO] [stderr] --> src/lib.rs:27:5 [INFO] [stderr] | [INFO] [stderr] 25 | pub struct Config { [INFO] [stderr] | ------ fields in this struct [INFO] [stderr] 26 | input_file: String, [INFO] [stderr] 27 | format: Option, [INFO] [stderr] | ^^^^^^ [INFO] [stderr] 28 | out_dir: PathBuf, [INFO] [stderr] | ^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `Config` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] [INFO] [stderr] warning: `kmer_frequencies` (lib) generated 2 warnings (run `cargo fix --lib -p kmer_frequencies` to apply 1 suggestion) [INFO] [stderr] warning: `kmer_frequencies` (lib test) generated 2 warnings (2 duplicates) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.06s [INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: syn v0.14.9 [INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1` [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/kmer_frequencies-1a5364ef5caf0b57) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/debug/deps/kmer_frequencies-6511a9db8ec3ec9b) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests kmer_frequencies [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "baec62e737461b28ee5f03906842860e3325afeff00c62065e15824c20551919", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "baec62e737461b28ee5f03906842860e3325afeff00c62065e15824c20551919", kill_on_drop: false }` [INFO] [stdout] baec62e737461b28ee5f03906842860e3325afeff00c62065e15824c20551919