[INFO] cloning repository https://github.com/togovar/clinvar_xml2vcf
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/togovar/clinvar_xml2vcf" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ftogovar%2Fclinvar_xml2vcf", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ftogovar%2Fclinvar_xml2vcf'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 5c4181890a26584640e98ee09ff33cb31ad7e5f0
[INFO] testing togovar/clinvar_xml2vcf against beta-2025-01-12 for beta-1.85-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ftogovar%2Fclinvar_xml2vcf" "/workspace/builds/worker-1-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc2/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/togovar/clinvar_xml2vcf on toolchain beta-2025-01-12
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-01-12" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/togovar/clinvar_xml2vcf
[INFO] finished tweaking git repo https://github.com/togovar/clinvar_xml2vcf
[INFO] tweaked toml for git repo https://github.com/togovar/clinvar_xml2vcf written to /workspace/builds/worker-1-tc2/source/Cargo.toml
[INFO] crate git repo https://github.com/togovar/clinvar_xml2vcf already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-01-12" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[ERROR] error running command: no output for 300 seconds
[INFO] testing togovar/clinvar_xml2vcf against beta-2025-01-12 for beta-1.85-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ftogovar%2Fclinvar_xml2vcf" "/workspace/builds/worker-1-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc2/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/togovar/clinvar_xml2vcf on toolchain beta-2025-01-12
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-01-12" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/togovar/clinvar_xml2vcf
[INFO] finished tweaking git repo https://github.com/togovar/clinvar_xml2vcf
[INFO] tweaked toml for git repo https://github.com/togovar/clinvar_xml2vcf written to /workspace/builds/worker-1-tc2/source/Cargo.toml
[INFO] crate git repo https://github.com/togovar/clinvar_xml2vcf already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-01-12" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded strum_macros v0.26.3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:86ea7c7af713d31e8cfdb68a6d0db50b5cf7cbeecde3d112f9f257f747318d36" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-01-12" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 84dc2b64e8e2d93ce038a65e5c4cd451032763a3773064b756e9ea67ab36d919
[INFO] running `Command { std: "docker" "start" "-a" "84dc2b64e8e2d93ce038a65e5c4cd451032763a3773064b756e9ea67ab36d919", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "84dc2b64e8e2d93ce038a65e5c4cd451032763a3773064b756e9ea67ab36d919", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "84dc2b64e8e2d93ce038a65e5c4cd451032763a3773064b756e9ea67ab36d919", kill_on_drop: false }`
[INFO] [stdout] 84dc2b64e8e2d93ce038a65e5c4cd451032763a3773064b756e9ea67ab36d919
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:86ea7c7af713d31e8cfdb68a6d0db50b5cf7cbeecde3d112f9f257f747318d36" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-01-12" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] b53dd26dcf2aab27ea93dff904877cb4d8f91334cfadd89b2b91cf1ab37b5637
[INFO] running `Command { std: "docker" "start" "-a" "b53dd26dcf2aab27ea93dff904877cb4d8f91334cfadd89b2b91cf1ab37b5637", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.85
[INFO] [stderr]    Compiling unicode-ident v1.0.12
[INFO] [stderr]    Compiling version_check v0.9.4
[INFO] [stderr]    Compiling libc v0.2.155
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling memchr v2.7.2
[INFO] [stderr]    Compiling rustversion v1.0.17
[INFO] [stderr]    Compiling unicode-width v0.1.12
[INFO] [stderr]    Compiling cfg-if v1.0.0
[INFO] [stderr]    Compiling unicode-segmentation v1.11.0
[INFO] [stderr]    Compiling rustix v0.38.34
[INFO] [stderr]    Compiling serde v1.0.203
[INFO] [stderr]    Compiling bitflags v1.3.2
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling adler v1.0.2
[INFO] [stderr]    Compiling strsim v0.8.0
[INFO] [stderr]    Compiling linux-raw-sys v0.4.14
[INFO] [stderr]    Compiling heck v0.5.0
[INFO] [stderr]    Compiling textwrap v0.11.0
[INFO] [stderr]    Compiling regex-syntax v0.8.3
[INFO] [stderr]    Compiling ansi_term v0.12.1
[INFO] [stderr]    Compiling bitflags v2.5.0
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling miniz_oxide v0.7.3
[INFO] [stderr]    Compiling crc32fast v1.4.2
[INFO] [stderr]    Compiling heck v0.3.3
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling fastrand v2.1.0
[INFO] [stderr]    Compiling once_cell v1.19.0
[INFO] [stderr]    Compiling aho-corasick v1.1.3
[INFO] [stderr]    Compiling flate2 v1.0.30
[INFO] [stderr]    Compiling quote v1.0.36
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling clap v2.34.0
[INFO] [stderr]    Compiling syn v2.0.66
[INFO] [stderr]    Compiling regex-automata v0.4.6
[INFO] [stderr]    Compiling tempfile v3.10.1
[INFO] [stderr]    Compiling serde_derive v1.0.203
[INFO] [stderr]    Compiling strum_macros v0.26.3
[INFO] [stderr]    Compiling structopt-derive v0.4.18
[INFO] [stderr]    Compiling regex v1.10.4
[INFO] [stderr]    Compiling structopt v0.3.26
[INFO] [stderr]    Compiling strum v0.26.2
[INFO] [stderr]    Compiling quick-xml v0.31.0
[INFO] [stderr]    Compiling clinvar v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 11.06s
[INFO] running `Command { std: "docker" "inspect" "b53dd26dcf2aab27ea93dff904877cb4d8f91334cfadd89b2b91cf1ab37b5637", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b53dd26dcf2aab27ea93dff904877cb4d8f91334cfadd89b2b91cf1ab37b5637", kill_on_drop: false }`
[INFO] [stdout] b53dd26dcf2aab27ea93dff904877cb4d8f91334cfadd89b2b91cf1ab37b5637
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:86ea7c7af713d31e8cfdb68a6d0db50b5cf7cbeecde3d112f9f257f747318d36" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-01-12" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 81755009b0ff7a20922ed07a94f58a9fcaab5651305318f37b11966b76a85700
[INFO] running `Command { std: "docker" "start" "-a" "81755009b0ff7a20922ed07a94f58a9fcaab5651305318f37b11966b76a85700", kill_on_drop: false }`
[INFO] [stderr]    Compiling clinvar v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.67s
[INFO] running `Command { std: "docker" "inspect" "81755009b0ff7a20922ed07a94f58a9fcaab5651305318f37b11966b76a85700", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "81755009b0ff7a20922ed07a94f58a9fcaab5651305318f37b11966b76a85700", kill_on_drop: false }`
[INFO] [stdout] 81755009b0ff7a20922ed07a94f58a9fcaab5651305318f37b11966b76a85700
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:86ea7c7af713d31e8cfdb68a6d0db50b5cf7cbeecde3d112f9f257f747318d36" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-01-12" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] dafe62b8f6c75c199ac9746d0bc95f075bb92e50f7f1b3ce597e0c3818c14ca5
[INFO] running `Command { std: "docker" "start" "-a" "dafe62b8f6c75c199ac9746d0bc95f075bb92e50f7f1b3ce597e0c3818c14ca5", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.04s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/clinvar-44ee5141de880f20)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/bin/clinvar_xml2vcf.rs (/opt/rustwide/target/debug/deps/clinvar_xml2vcf-77734ee4b872df98)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests clinvar
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "dafe62b8f6c75c199ac9746d0bc95f075bb92e50f7f1b3ce597e0c3818c14ca5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "dafe62b8f6c75c199ac9746d0bc95f075bb92e50f7f1b3ce597e0c3818c14ca5", kill_on_drop: false }`
[INFO] [stdout] dafe62b8f6c75c199ac9746d0bc95f075bb92e50f7f1b3ce597e0c3818c14ca5