[INFO] cloning repository https://github.com/ban-m/kiley
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/ban-m/kiley" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fban-m%2Fkiley", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fban-m%2Fkiley'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] f4e9c0d11d8218d561f91d68117a3827a3d5a8b4
[INFO] testing ban-m/kiley/f4e9c0d11d8218d561f91d68117a3827a3d5a8b4 against beta-2025-01-12 for beta-1.85-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fban-m%2Fkiley" "/workspace/builds/worker-1-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc2/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/ban-m/kiley on toolchain beta-2025-01-12
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-01-12" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/ban-m/kiley
[INFO] finished tweaking git repo https://github.com/ban-m/kiley
[INFO] tweaked toml for git repo https://github.com/ban-m/kiley written to /workspace/builds/worker-1-tc2/source/Cargo.toml
[INFO] crate git repo https://github.com/ban-m/kiley already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-01-12" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating git repository `https://github.com/ban-m/bio_utils.git`
[INFO] [stderr]     Updating git repository `https://github.com/ban-m/edlib-sys.git`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:86ea7c7af713d31e8cfdb68a6d0db50b5cf7cbeecde3d112f9f257f747318d36" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-01-12" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 580f07a09628a93e6586e38a73fd6062c6aea0d47581e87c7ee7c4eb5acba2e3
[INFO] running `Command { std: "docker" "start" "-a" "580f07a09628a93e6586e38a73fd6062c6aea0d47581e87c7ee7c4eb5acba2e3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "580f07a09628a93e6586e38a73fd6062c6aea0d47581e87c7ee7c4eb5acba2e3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "580f07a09628a93e6586e38a73fd6062c6aea0d47581e87c7ee7c4eb5acba2e3", kill_on_drop: false }`
[INFO] [stdout] 580f07a09628a93e6586e38a73fd6062c6aea0d47581e87c7ee7c4eb5acba2e3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:86ea7c7af713d31e8cfdb68a6d0db50b5cf7cbeecde3d112f9f257f747318d36" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-01-12" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 74636aa76b17ffaac50961f308dee78026a3fab4363545656905c2bae8b95f38
[INFO] running `Command { std: "docker" "start" "-a" "74636aa76b17ffaac50961f308dee78026a3fab4363545656905c2bae8b95f38", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.155
[INFO] [stderr]    Compiling proc-macro2 v1.0.86
[INFO] [stderr]    Compiling unicode-ident v1.0.12
[INFO] [stderr]    Compiling crossbeam-utils v0.8.20
[INFO] [stderr]    Compiling memchr v2.7.4
[INFO] [stderr]    Compiling cfg-if v1.0.0
[INFO] [stderr]    Compiling regex-syntax v0.8.4
[INFO] [stderr]    Compiling byteorder v1.5.0
[INFO] [stderr]    Compiling rayon-core v1.12.1
[INFO] [stderr]    Compiling serde v1.0.204
[INFO] [stderr]    Compiling utf8parse v0.2.2
[INFO] [stderr]    Compiling anstyle-query v1.1.1
[INFO] [stderr]    Compiling colorchoice v1.0.2
[INFO] [stderr]    Compiling log v0.4.22
[INFO] [stderr]    Compiling anstyle v1.0.8
[INFO] [stderr]    Compiling is_terminal_polyfill v1.70.1
[INFO] [stderr]    Compiling bytecount v0.6.8
[INFO] [stderr]    Compiling anstyle-parse v0.2.5
[INFO] [stderr]    Compiling humantime v2.1.0
[INFO] [stderr]    Compiling either v1.13.0
[INFO] [stderr]    Compiling anstream v0.6.15
[INFO] [stderr]    Compiling aho-corasick v1.1.3
[INFO] [stderr]    Compiling quote v1.0.36
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.18
[INFO] [stderr]    Compiling syn v2.0.72
[INFO] [stderr]    Compiling crossbeam-deque v0.8.5
[INFO] [stderr]    Compiling getrandom v0.2.15
[INFO] [stderr]    Compiling jobserver v0.1.32
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling cc v1.1.7
[INFO] [stderr]    Compiling rand_xoshiro v0.6.0
[INFO] [stderr]    Compiling rayon v1.10.0
[INFO] [stderr]    Compiling regex-automata v0.4.7
[INFO] [stderr]    Compiling edlib_sys v0.2.0 (https://github.com/ban-m/edlib-sys.git?branch=master#ef696f3f)
[INFO] [stderr]    Compiling zerocopy-derive v0.7.35
[INFO] [stderr]    Compiling serde_derive v1.0.204
[INFO] [stderr]    Compiling zerocopy v0.7.35
[INFO] [stderr]    Compiling regex v1.10.6
[INFO] [stderr]    Compiling env_filter v0.1.2
[INFO] [stderr]    Compiling ppv-lite86 v0.2.20
[INFO] [stderr]    Compiling env_logger v0.11.5
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling bio_utils v0.3.0 (https://github.com/ban-m/bio_utils.git#dc32ea1d)
[INFO] [stderr]    Compiling kiley v0.3.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 20.15s
[INFO] running `Command { std: "docker" "inspect" "74636aa76b17ffaac50961f308dee78026a3fab4363545656905c2bae8b95f38", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "74636aa76b17ffaac50961f308dee78026a3fab4363545656905c2bae8b95f38", kill_on_drop: false }`
[INFO] [stdout] 74636aa76b17ffaac50961f308dee78026a3fab4363545656905c2bae8b95f38
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:86ea7c7af713d31e8cfdb68a6d0db50b5cf7cbeecde3d112f9f257f747318d36" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-01-12" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 027ea1f4cf0519f1d6e52d4e5fabbeaeeddf5a980a9f50d0c2898a6f85692c99
[INFO] running `Command { std: "docker" "start" "-a" "027ea1f4cf0519f1d6e52d4e5fabbeaeeddf5a980a9f50d0c2898a6f85692c99", kill_on_drop: false }`
[INFO] [stderr]    Compiling kiley v0.3.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 3.76s
[INFO] running `Command { std: "docker" "inspect" "027ea1f4cf0519f1d6e52d4e5fabbeaeeddf5a980a9f50d0c2898a6f85692c99", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "027ea1f4cf0519f1d6e52d4e5fabbeaeeddf5a980a9f50d0c2898a6f85692c99", kill_on_drop: false }`
[INFO] [stdout] 027ea1f4cf0519f1d6e52d4e5fabbeaeeddf5a980a9f50d0c2898a6f85692c99
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:86ea7c7af713d31e8cfdb68a6d0db50b5cf7cbeecde3d112f9f257f747318d36" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-01-12" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] f59b8ee05f8e2248c26228d2ff2dff591bbbf18ac27f1cac39ff83893545affe
[INFO] running `Command { std: "docker" "start" "-a" "f59b8ee05f8e2248c26228d2ff2dff591bbbf18ac27f1cac39ff83893545affe", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.03s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/kiley-9d5e465127e92a23)
[INFO] [stdout] 
[INFO] [stdout] running 42 tests
[INFO] [stdout] test bialignment::test::edit_dist_ops_check ... ok
[INFO] [stdout] test bialignment::test::global_affine_check ... ok
[INFO] [stdout] test bialignment::test::edit_dist_check ... ok
[INFO] [stdout] test bialignment::test::edit_dist_fast_check_short ... ok
[INFO] [stdout] test bialignment::guided::test::edit_dist_check_iden ... ok
[INFO] [stdout] test hmm::full::test::align ... ok
[INFO] [stdout] test hmm::guided::tests::align ... ok
[INFO] [stdout] test hmm::full::test::forward ... ok
[INFO] [stdout] test hmm::guided::tests::likelihood2 ... ok
[INFO] [stdout] test bialignment::guided::test::edit_dist_check ... ok
[INFO] [stdout] test hmm::guided::tests::likelihood ... ok
[INFO] [stdout] test bialignment::guided::test::global_check ... ok
[INFO] [stdout] test bialignment::guided::test::overlap_check ... ok
[INFO] [stdout] test hmm::guided::tests::update_aln_path_test ... ok
[INFO] [stdout] test hmm::guided_antidiagonal::test::align ... ok
[INFO] [stdout] test bialignment::guided::test::infix_check ... ok
[INFO] [stdout] test bialignment::banded::tests::banded_naive_check ... ok
[INFO] [stdout] test bialignment::test::naive_edit_dist_modification_check ... ok
[INFO] [stdout] test bialignment::banded::tests::global_affine_banded_check ... ok
[INFO] [stdout] test hmm::guided_antidiagonal::test::lk_post_test ... ok
[INFO] [stdout] test hmm::guided_antidiagonal::test::align_test ... ok
[INFO] [stdout] test hmm::guided_antidiagonal::test::fit_test ... ok
[INFO] [stdout] test hmm::guided_antidiagonal::test::lk_post ... ok
[INFO] [stdout] test hmm::tests::align ... ok
[INFO] [stdout] test hmm::tests::hmm_full_guided ... ok
[INFO] [stdout] test op::tests::take_skip ... ok
[INFO] [stdout] test padseq::tests::padseq ... ok
[INFO] [stdout] test hmm::guided_antidiagonal::test::lk_test ... ok
[INFO] [stdout] test hmm::guided_antidiagonal::test::lk_pre ... ok
[INFO] [stdout] test hmm::full::test::modification_table_test ... ok
[INFO] [stdout] test bialignment::banded::tests::edit_dist_modification_check has been running for over 60 seconds
[INFO] [stdout] test bialignment::guided::test::modification_table_check has been running for over 60 seconds
[INFO] [stdout] test bialignment::guided::test::polish_test has been running for over 60 seconds
[INFO] [stdout] test bialignment::test::edit_dist_fast_check has been running for over 60 seconds
[INFO] [stdout] test bialignment::test::edit_dist_fast_check_sim has been running for over 60 seconds
[INFO] [stdout] test bialignment::test::edit_dist_post_check has been running for over 60 seconds
[INFO] [stdout] test hmm::guided::tests::modification_table has been running for over 60 seconds
[INFO] [stdout] test hmm::guided::tests::modification_table2 has been running for over 60 seconds
[INFO] [stdout] test hmm::guided::tests::polish_long_insertion has been running for over 60 seconds
[INFO] [stdout] test hmm::guided::tests::polish_test has been running for over 60 seconds
[INFO] [stdout] test bialignment::guided::test::polish_test ... ok
[INFO] [stdout] test bialignment::banded::tests::edit_dist_modification_check ... ok
[INFO] [stdout] test hmm::guided_antidiagonal::test::modification_table_test has been running for over 60 seconds
[INFO] [stdout] test bialignment::test::edit_dist_fast_check_sim ... ok
[INFO] [stdout] test hmm::guided_antidiagonal::test::polish has been running for over 60 seconds
[INFO] [stdout] test bialignment::test::edit_dist_fast_check ... ok
[INFO] [stdout] test hmm::guided_antidiagonal::test::modification_table_test ... ok
[INFO] [stdout] test bialignment::test::edit_dist_post_check ... ok
[INFO] [stdout] test hmm::guided::tests::modification_table ... ok
[INFO] [stdout] test bialignment::guided::test::modification_table_check ... ok
[INFO] [stdout] test hmm::guided::tests::polish_test ... ok
[INFO] [stdout] test hmm::guided::tests::polish_long_insertion ... ok
[INFO] [stdout] test hmm::guided_antidiagonal::test::polish ... ok
[INFO] [stdout] test hmm::guided::tests::modification_table2 ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 42 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 842.32s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/bin/inves.rs (/opt/rustwide/target/debug/deps/inves-90478b5abe0b56bc)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/bin/test.rs (/opt/rustwide/target/debug/deps/test-d9da5688d7831659)
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests kiley
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "f59b8ee05f8e2248c26228d2ff2dff591bbbf18ac27f1cac39ff83893545affe", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f59b8ee05f8e2248c26228d2ff2dff591bbbf18ac27f1cac39ff83893545affe", kill_on_drop: false }`
[INFO] [stdout] f59b8ee05f8e2248c26228d2ff2dff591bbbf18ac27f1cac39ff83893545affe