[INFO] fetching crate phyloalifold 0.1.3...
[INFO] testing phyloalifold-0.1.3 against 1.84.0 for beta-1.85-1
[INFO] extracting crate phyloalifold 0.1.3 into /workspace/builds/worker-5-tc1/source
[INFO] validating manifest of crates.io crate phyloalifold 0.1.3 on toolchain 1.84.0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.84.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate phyloalifold 0.1.3
[INFO] finished tweaking crates.io crate phyloalifold 0.1.3
[INFO] tweaked toml for crates.io crate phyloalifold 0.1.3 written to /workspace/builds/worker-5-tc1/source/Cargo.toml
[INFO] crate crates.io crate phyloalifold 0.1.3 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.84.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: no edition set: defaulting to the 2015 edition while the latest is 2021
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded ucd-util v0.1.7
[INFO] [stderr]   Downloaded ndarray v0.9.1
[INFO] [stderr]   Downloaded bv v0.7.4
[INFO] [stderr]   Downloaded rna-ss-params v0.1.16
[INFO] [stderr]   Downloaded bio v0.20.3
[INFO] [stderr]   Downloaded bstr v0.2.11
[INFO] [stderr]   Downloaded bio-seq-algos v0.1.15
[INFO] [stderr]   Downloaded rna-algos v0.1.14
[INFO] [stderr]   Downloaded phylofold v0.1.2
[INFO] [stderr]   Downloaded phyloprob v0.1.2
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:86ea7c7af713d31e8cfdb68a6d0db50b5cf7cbeecde3d112f9f257f747318d36" "/opt/rustwide/cargo-home/bin/cargo" "+1.84.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 7bd9bf22cf475f4f572d9989ac9e6e373cdd19b61e494482a92656f33b60e6a3
[INFO] running `Command { std: "docker" "start" "-a" "7bd9bf22cf475f4f572d9989ac9e6e373cdd19b61e494482a92656f33b60e6a3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "7bd9bf22cf475f4f572d9989ac9e6e373cdd19b61e494482a92656f33b60e6a3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "7bd9bf22cf475f4f572d9989ac9e6e373cdd19b61e494482a92656f33b60e6a3", kill_on_drop: false }`
[INFO] [stdout] 7bd9bf22cf475f4f572d9989ac9e6e373cdd19b61e494482a92656f33b60e6a3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:86ea7c7af713d31e8cfdb68a6d0db50b5cf7cbeecde3d112f9f257f747318d36" "/opt/rustwide/cargo-home/bin/cargo" "+1.84.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] da5ecc52f88d1e8fb4c306a3d6d1992629f7186a3973c40587d132a24beafe67
[INFO] running `Command { std: "docker" "start" "-a" "da5ecc52f88d1e8fb4c306a3d6d1992629f7186a3973c40587d132a24beafe67", kill_on_drop: false }`
[INFO] [stderr] warning: no edition set: defaulting to the 2015 edition while the latest is 2021
[INFO] [stderr]    Compiling proc-macro2 v1.0.9
[INFO] [stderr]    Compiling autocfg v1.0.0
[INFO] [stderr]    Compiling unicode-xid v0.2.0
[INFO] [stderr]    Compiling syn v1.0.16
[INFO] [stderr]    Compiling serde v1.0.104
[INFO] [stderr]    Compiling memchr v2.3.3
[INFO] [stderr]    Compiling byteorder v1.3.4
[INFO] [stderr]    Compiling libc v0.2.67
[INFO] [stderr]    Compiling either v1.5.3
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling matrixmultiply v0.1.15
[INFO] [stderr]    Compiling num-traits v0.2.11
[INFO] [stderr]    Compiling ryu v1.0.2
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling num-integer v0.1.42
[INFO] [stderr]    Compiling regex-automata v0.1.9
[INFO] [stderr]    Compiling bv v0.7.4
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling ndarray v0.9.1
[INFO] [stderr]    Compiling ucd-util v0.1.7
[INFO] [stderr]    Compiling rawpointer v0.1.0
[INFO] [stderr]    Compiling void v1.0.2
[INFO] [stderr]    Compiling regex v0.2.11
[INFO] [stderr]    Compiling unreachable v1.0.0
[INFO] [stderr]    Compiling regex-syntax v0.5.6
[INFO] [stderr]    Compiling quote v1.0.3
[INFO] [stderr]    Compiling aho-corasick v0.6.10
[INFO] [stderr]    Compiling csv-core v0.1.10
[INFO] [stderr]    Compiling time v0.1.42
[INFO] [stderr]    Compiling thread_local v0.3.6
[INFO] [stderr]    Compiling itertools v0.6.5
[INFO] [stderr]    Compiling lazy_static v0.1.16
[INFO] [stderr]    Compiling utf8-ranges v1.0.4
[INFO] [stderr]    Compiling itoa v0.4.5
[INFO] [stderr]    Compiling rustc-hash v1.1.0
[INFO] [stderr]    Compiling bit-vec v0.4.4
[INFO] [stderr]    Compiling bio-seq-algos v0.1.15
[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]    Compiling bit-set v0.4.0
[INFO] [stderr]    Compiling unicode-width v0.1.7
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling bytecount v0.3.2
[INFO] [stderr]    Compiling approx v0.1.1
[INFO] [stderr]    Compiling num-traits v0.1.43
[INFO] [stderr]    Compiling num-complex v0.1.43
[INFO] [stderr]    Compiling ordered-float v0.5.2
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling lazy_static v0.2.11
[INFO] [stderr]    Compiling getopts v0.2.21
[INFO] [stderr]    Compiling rna-ss-params v0.1.16
[INFO] [stderr]    Compiling num_cpus v1.12.0
[INFO] [stderr]    Compiling itertools v0.8.2
[INFO] [stderr]    Compiling scoped_threadpool v0.1.9
[INFO] [stderr]    Compiling itertools v0.7.11
[INFO] [stderr]    Compiling serde_derive v1.0.104
[INFO] [stderr]    Compiling bstr v0.2.11
[INFO] [stderr]    Compiling multimap v0.4.0
[INFO] [stderr]    Compiling vec_map v0.8.1
[INFO] [stderr]    Compiling csv v1.1.3
[INFO] [stderr]    Compiling bio v0.20.3
[INFO] [stderr]    Compiling rna-algos v0.1.14
[INFO] [stderr]    Compiling phyloprob v0.1.2
[INFO] [stderr]    Compiling phylofold v0.1.2
[INFO] [stderr]    Compiling phyloalifold v0.1.3 (/opt/rustwide/workdir)
[INFO] [stdout] warning: panic message is not a string literal
[INFO] [stdout]   --> src/main.rs:40:72
[INFO] [stdout]    |
[INFO] [stdout] 40 |     Err(failure) => {print_program_usage(&program_name, &opts); panic!(failure.to_string())}
[INFO] [stdout]    |                                                                        ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: this usage of `panic!()` is deprecated; it will be a hard error in Rust 2021
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/panic-macro-consistency.html>
[INFO] [stdout]    = note: `#[warn(non_fmt_panics)]` on by default
[INFO] [stdout] help: add a "{}" format string to `Display` the message
[INFO] [stdout]    |
[INFO] [stdout] 40 |     Err(failure) => {print_program_usage(&program_name, &opts); panic!("{}", failure.to_string())}
[INFO] [stdout]    |                                                                        +++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: linking with `cc` failed: exit status: 1
[INFO] [stdout]   |
[INFO] [stdout]   = note: LC_ALL="C" PATH="/opt/rustwide/rustup-home/toolchains/1.84.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/bin:/opt/rustwide/cargo-home/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin" VSLANG="1033" "cc" "-m64" "/tmp/rustcU2Q17m/symbols.o" "/opt/rustwide/target/debug/deps/phyloalifold-694cedd443fed2b5.phyloalifold.f1f0478a6ae10537-cgu.0.rcgu.o" "/opt/rustwide/target/debug/deps/phyloalifold-694cedd443fed2b5.phyloalifold.f1f0478a6ae10537-cgu.1.rcgu.o" "/opt/rustwide/target/debug/deps/phyloalifold-694cedd443fed2b5.phyloalifold.f1f0478a6ae10537-cgu.2.rcgu.o" "/opt/rustwide/target/debug/deps/phyloalifold-694cedd443fed2b5.phyloalifold.f1f0478a6ae10537-cgu.3.rcgu.o" "/opt/rustwide/target/debug/deps/phyloalifold-694cedd443fed2b5.phyloalifold.f1f0478a6ae10537-cgu.4.rcgu.o" "/opt/rustwide/target/debug/deps/phyloalifold-694cedd443fed2b5.cst1mpyfzwrbgpkopjf58zbty.rcgu.o" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/libnum_cpus-94b7d5a344385fcf.rlib" "/opt/rustwide/target/debug/deps/liblibc-72f00c2a81becfe8.rlib" "/opt/rustwide/target/debug/deps/libbio-e9b67a9aeeb25c82.rlib" "/opt/rustwide/target/debug/deps/libfxhash-b12eb2acde28615b.rlib" "/opt/rustwide/target/debug/deps/libvec_map-3c83ca74b2806fb1.rlib" "/opt/rustwide/target/debug/deps/libbv-b13ab9322ea935f0.rlib" "/opt/rustwide/target/debug/deps/libregex-7c1415ee8a0e9fe5.rlib" "/opt/rustwide/target/debug/deps/libutf8_ranges-d786808dbca490da.rlib" "/opt/rustwide/target/debug/deps/libregex_syntax-28f62d11b800cfd6.rlib" "/opt/rustwide/target/debug/deps/libucd_util-66b074b904d459ed.rlib" "/opt/rustwide/target/debug/deps/libthread_local-3ada1c32a1a7cf0d.rlib" "/opt/rustwide/target/debug/deps/libaho_corasick-80759911be7b2c49.rlib" "/opt/rustwide/target/debug/deps/libquick_error-f65da788bd712813.rlib" "/opt/rustwide/target/debug/deps/libordered_float-a91acc6136d13e99.rlib" "/opt/rustwide/target/debug/deps/libunreachable-35917079a718e177.rlib" "/opt/rustwide/target/debug/deps/libvoid-9a492f7ad5a38e3b.rlib" "/opt/rustwide/target/debug/deps/libnum_integer-037e8d793d8ac970.rlib" "/opt/rustwide/target/debug/deps/libnewtype_derive-47945c8ae03708fc.rlib" "/opt/rustwide/target/debug/deps/libndarray-906be43a8e8ff905.rlib" "/opt/rustwide/target/debug/deps/libnum_complex-72051f28da94a146.rlib" "/opt/rustwide/target/debug/deps/libnum_traits-abe519c7400f6460.rlib" "/opt/rustwide/target/debug/deps/libmatrixmultiply-80546a6ac6b492ad.rlib" "/opt/rustwide/target/debug/deps/librawpointer-27159f211ab290d8.rlib" "/opt/rustwide/target/debug/deps/libmultimap-ef311106f6c6951c.rlib" "/opt/rustwide/target/debug/deps/liblazy_static-95afca2236a91686.rlib" "/opt/rustwide/target/debug/deps/libitertools_num-818287db182c84fc.rlib" "/opt/rustwide/target/debug/deps/libnum_traits-adccf75fddb2e9ba.rlib" "/opt/rustwide/target/debug/deps/libitertools-6f19a1d52abddf14.rlib" "/opt/rustwide/target/debug/deps/libcustom_derive-4fb01e8a447fea05.rlib" "/opt/rustwide/target/debug/deps/libcsv-73e9b6b6dc4d938e.rlib" "/opt/rustwide/target/debug/deps/libryu-963b43611c9cf1fa.rlib" "/opt/rustwide/target/debug/deps/libitoa-615dc46ff14c29ec.rlib" "/opt/rustwide/target/debug/deps/libcsv_core-86f55947f5b7b102.rlib" "/opt/rustwide/target/debug/deps/libbstr-abf0ce4937ec59ba.rlib" "/opt/rustwide/target/debug/deps/libregex_automata-4c6a346c72dcbd6f.rlib" "/opt/rustwide/target/debug/deps/libbyteorder-75ef958764ec5bad.rlib" "/opt/rustwide/target/debug/deps/libmemchr-08aa2a08c02cee9e.rlib" "/opt/rustwide/target/debug/deps/liblazy_static-c71c7d3baff721e2.rlib" "/opt/rustwide/target/debug/deps/libserde-63f71a1e652e9693.rlib" "/opt/rustwide/target/debug/deps/libbytecount-dccf75f7d77f5064.rlib" "/opt/rustwide/target/debug/deps/libbit_set-028ffaa2ed6c4d77.rlib" "/opt/rustwide/target/debug/deps/libbit_vec-c9bd33c87cf38161.rlib" "/opt/rustwide/target/debug/deps/libapprox-d48d26e6e41dcd6b.rlib" "/opt/rustwide/target/debug/deps/libphyloalifold-bf8df5c035068f9c.rlib" "/opt/rustwide/target/debug/deps/libphylofold-d250b4c2defc54ac.rlib" "/opt/rustwide/target/debug/deps/libphyloprob-8b5c20b02cad7d71.rlib" "/opt/rustwide/target/debug/deps/libitertools-faa31830fc98f822.rlib" "/opt/rustwide/target/debug/deps/libscoped_threadpool-a4746360204a0113.rlib" "/opt/rustwide/target/debug/deps/librna_algos-03a4901a9e28af6d.rlib" "/opt/rustwide/target/debug/deps/libitertools-18fbe77ea5ed2817.rlib" "/opt/rustwide/target/debug/deps/libeither-71e6b00de2b593d8.rlib" "/opt/rustwide/target/debug/deps/libgetopts-841679554651058d.rlib" "/opt/rustwide/target/debug/deps/libunicode_width-79e17135f8b0f9d1.rlib" "/opt/rustwide/target/debug/deps/librna_ss_params-f4a958cfc13787d7.rlib" "/opt/rustwide/target/debug/deps/libbio_seq_algos-7e75c51724e83dcb.rlib" "/opt/rustwide/target/debug/deps/librustc_hash-7d57cddf9d03c6bf.rlib" "/opt/rustwide/target/debug/deps/liblazy_static-e8d4fb9ea6963759.rlib" "/opt/rustwide/rustup-home/toolchains/1.84.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libstd-057643b1ee86c6e4.rlib" "/opt/rustwide/rustup-home/toolchains/1.84.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libpanic_unwind-8e63f34add4b5f76.rlib" "/opt/rustwide/rustup-home/toolchains/1.84.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libobject-8f13995dfe88b143.rlib" "/opt/rustwide/rustup-home/toolchains/1.84.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libmemchr-45742ba23c5ac84b.rlib" "/opt/rustwide/rustup-home/toolchains/1.84.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libaddr2line-bea85df8985bb2f0.rlib" "/opt/rustwide/rustup-home/toolchains/1.84.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libgimli-042a1cb2143833ef.rlib" "/opt/rustwide/rustup-home/toolchains/1.84.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_demangle-092847c11df9843e.rlib" "/opt/rustwide/rustup-home/toolchains/1.84.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libstd_detect-766a7f754c8a7b1e.rlib" "/opt/rustwide/rustup-home/toolchains/1.84.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libhashbrown-9b015ab0e459320f.rlib" "/opt/rustwide/rustup-home/toolchains/1.84.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_alloc-5742b2ff1aee27a6.rlib" "/opt/rustwide/rustup-home/toolchains/1.84.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libminiz_oxide-d03b432324732a0e.rlib" "/opt/rustwide/rustup-home/toolchains/1.84.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libadler-7edbe936f6124018.rlib" "/opt/rustwide/rustup-home/toolchains/1.84.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libunwind-b3cefab73e1d8804.rlib" "/opt/rustwide/rustup-home/toolchains/1.84.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcfg_if-a6ffb752c82ede63.rlib" "/opt/rustwide/rustup-home/toolchains/1.84.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/liblibc-c896c1f3ebd992a5.rlib" "/opt/rustwide/rustup-home/toolchains/1.84.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/liballoc-915fd1ebf7e3c376.rlib" "/opt/rustwide/rustup-home/toolchains/1.84.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_core-0ca9d0e07c79bf1c.rlib" "/opt/rustwide/rustup-home/toolchains/1.84.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcore-1e6496089ac34c68.rlib" "/opt/rustwide/rustup-home/toolchains/1.84.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcompiler_builtins-3d4809363f767eb8.rlib" "-Wl,-Bdynamic" "-lutil" "-ldl" "-lutil" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/rustup-home/toolchains/1.84.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/opt/rustwide/target/debug/deps/phyloalifold-694cedd443fed2b5" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs"
[INFO] [stdout]   = note: /usr/bin/ld: final link failed: No space left on device
[INFO] [stdout]           collect2: error: ld returned 1 exit status
[INFO] [stdout]           
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `phyloalifold` (bin "phyloalifold") due to 1 previous error; 1 warning emitted
[INFO] running `Command { std: "docker" "inspect" "da5ecc52f88d1e8fb4c306a3d6d1992629f7186a3973c40587d132a24beafe67", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "da5ecc52f88d1e8fb4c306a3d6d1992629f7186a3973c40587d132a24beafe67", kill_on_drop: false }`
[INFO] [stdout] da5ecc52f88d1e8fb4c306a3d6d1992629f7186a3973c40587d132a24beafe67