[INFO] cloning repository https://github.com/joyliu-q/rust-genomics
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/joyliu-q/rust-genomics" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fjoyliu-q%2Frust-genomics", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fjoyliu-q%2Frust-genomics'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] a62b7e31b41dd1efe396e5ee25b420c4b5bdb887
[INFO] testing joyliu-q/rust-genomics against 1.84.0 for beta-1.85-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fjoyliu-q%2Frust-genomics" "/workspace/builds/worker-6-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc1/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/joyliu-q/rust-genomics on toolchain 1.84.0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.84.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/joyliu-q/rust-genomics
[INFO] finished tweaking git repo https://github.com/joyliu-q/rust-genomics
[INFO] tweaked toml for git repo https://github.com/joyliu-q/rust-genomics written to /workspace/builds/worker-6-tc1/source/Cargo.toml
[INFO] crate git repo https://github.com/joyliu-q/rust-genomics already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.84.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded syn v1.0.45
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:86ea7c7af713d31e8cfdb68a6d0db50b5cf7cbeecde3d112f9f257f747318d36" "/opt/rustwide/cargo-home/bin/cargo" "+1.84.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] de84fa38f36159582a2c3311686f6357e414b54960b174aed031e1c38cab11df
[INFO] running `Command { std: "docker" "start" "-a" "de84fa38f36159582a2c3311686f6357e414b54960b174aed031e1c38cab11df", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "de84fa38f36159582a2c3311686f6357e414b54960b174aed031e1c38cab11df", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "de84fa38f36159582a2c3311686f6357e414b54960b174aed031e1c38cab11df", kill_on_drop: false }`
[INFO] [stdout] de84fa38f36159582a2c3311686f6357e414b54960b174aed031e1c38cab11df
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:86ea7c7af713d31e8cfdb68a6d0db50b5cf7cbeecde3d112f9f257f747318d36" "/opt/rustwide/cargo-home/bin/cargo" "+1.84.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] ace227cf79b1ec719dafb93b98c421c094bee231bb4162d67de395b99d7ca3bf
[INFO] running `Command { std: "docker" "start" "-a" "ace227cf79b1ec719dafb93b98c421c094bee231bb4162d67de395b99d7ca3bf", kill_on_drop: false }`
[INFO] [stderr]    Compiling autocfg v1.0.1
[INFO] [stderr]    Compiling cfg-if v0.1.10
[INFO] [stderr]    Compiling libc v0.2.79
[INFO] [stderr]    Compiling maybe-uninit v2.0.0
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling getrandom v0.1.15
[INFO] [stderr]    Compiling scopeguard v1.1.0
[INFO] [stderr]    Compiling rayon-core v1.8.1
[INFO] [stderr]    Compiling ppv-lite86 v0.2.9
[INFO] [stderr]    Compiling either v1.6.1
[INFO] [stderr]    Compiling strsim v0.10.0
[INFO] [stderr]    Compiling crossbeam-utils v0.7.2
[INFO] [stderr]    Compiling memoffset v0.5.6
[INFO] [stderr]    Compiling crossbeam-epoch v0.8.2
[INFO] [stderr]    Compiling rayon v1.4.1
[INFO] [stderr]    Compiling num_cpus v1.13.0
[INFO] [stderr]    Compiling rand_core v0.5.1
[INFO] [stderr]    Compiling crossbeam-channel v0.4.4
[INFO] [stderr]    Compiling rand_chacha v0.2.2
[INFO] [stderr]    Compiling rand v0.7.3
[INFO] [stderr]    Compiling crossbeam-deque v0.7.3
[INFO] [stderr]    Compiling rust-genomics v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused imports: `damerau_levenshtein`, `hamming`, `jaro_winkler`, `jaro`, `levenshtein`, `normalized_damerau_levenshtein`, `osa_distance`, and `sorensen_dice`
[INFO] [stdout]   --> src/lib.rs:13:14
[INFO] [stdout]    |
[INFO] [stdout] 13 | use strsim::{hamming, levenshtein, normalized_levenshtein, osa_distance,
[INFO] [stdout]    |              ^^^^^^^  ^^^^^^^^^^^                          ^^^^^^^^^^^^
[INFO] [stdout] 14 |              damerau_levenshtein, normalized_damerau_levenshtein, jaro,
[INFO] [stdout]    |              ^^^^^^^^^^^^^^^^^^^  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  ^^^^
[INFO] [stdout] 15 |              jaro_winkler, sorensen_dice};
[INFO] [stdout]    |              ^^^^^^^^^^^^  ^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Write`
[INFO] [stdout]  --> src/lib.rs:7:15
[INFO] [stdout]   |
[INFO] [stdout] 7 | use std::io::{Write, BufReader, BufRead};
[INFO] [stdout]   |               ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/lib.rs:259:13
[INFO] [stdout]     |
[INFO] [stdout] 259 |         let mut diff = 0;
[INFO] [stdout]     |             ----^^^^
[INFO] [stdout]     |             |
[INFO] [stdout]     |             help: remove this `mut`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_mut)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: enum `Nucleotide` is never used
[INFO] [stdout]   --> src/lib.rs:23:6
[INFO] [stdout]    |
[INFO] [stdout] 23 | enum Nucleotide {
[INFO] [stdout]    |      ^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated items `to_char` and `index_to_nt` are never used
[INFO] [stdout]   --> src/lib.rs:30:8
[INFO] [stdout]    |
[INFO] [stdout] 29 | impl Nucleotide {
[INFO] [stdout]    | --------------- associated items in this implementation
[INFO] [stdout] 30 |     fn to_char(&self) -> char {
[INFO] [stdout]    |        ^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 38 |     fn index_to_nt(index: usize) -> Result<Nucleotide, Error> {
[INFO] [stdout]    |        ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `check` is never used
[INFO] [stdout]   --> src/lib.rs:84:8
[INFO] [stdout]    |
[INFO] [stdout] 68 | impl Sequence {
[INFO] [stdout]    | ------------- method in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 84 |     fn check(&self) -> bool {
[INFO] [stdout]    |        ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `Result` that must be used
[INFO] [stdout]    --> src/lib.rs:309:9
[INFO] [stdout]     |
[INFO] [stdout] 309 |         write!(f, "File Name: {}\n", self.name);
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout]     = note: `#[warn(unused_must_use)]` on by default
[INFO] [stdout]     = note: this warning originates in the macro `write` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `Result` that must be used
[INFO] [stdout]    --> src/lib.rs:311:13
[INFO] [stdout]     |
[INFO] [stdout] 311 |             write!(f, "Header: {}\nSequence: {}\n\n", record.header, record.sequence);
[INFO] [stdout]     |             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout]     = note: this warning originates in the macro `write` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Sequence`
[INFO] [stdout]  --> src/main.rs:1:21
[INFO] [stdout]   |
[INFO] [stdout] 1 | use rust_genomics::{Sequence, FASTA};
[INFO] [stdout]   |                     ^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 3.32s
[INFO] running `Command { std: "docker" "inspect" "ace227cf79b1ec719dafb93b98c421c094bee231bb4162d67de395b99d7ca3bf", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ace227cf79b1ec719dafb93b98c421c094bee231bb4162d67de395b99d7ca3bf", kill_on_drop: false }`
[INFO] [stdout] ace227cf79b1ec719dafb93b98c421c094bee231bb4162d67de395b99d7ca3bf
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:86ea7c7af713d31e8cfdb68a6d0db50b5cf7cbeecde3d112f9f257f747318d36" "/opt/rustwide/cargo-home/bin/cargo" "+1.84.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 295e35d134a0e25ff32c49a406d957eda1869863bd809c5703f1fc526c1b81df
[INFO] running `Command { std: "docker" "start" "-a" "295e35d134a0e25ff32c49a406d957eda1869863bd809c5703f1fc526c1b81df", kill_on_drop: false }`
[INFO] [stderr]    Compiling serde v1.0.117
[INFO] [stderr]    Compiling semver-parser v0.7.0
[INFO] [stderr]    Compiling byteorder v1.3.4
[INFO] [stderr]    Compiling proc-macro2 v1.0.24
[INFO] [stderr]    Compiling ryu v1.0.5
[INFO] [stderr]    Compiling memchr v2.3.3
[INFO] [stderr]    Compiling unicode-xid v0.2.1
[INFO] [stderr]    Compiling num-traits v0.2.12
[INFO] [stderr]    Compiling serde_json v1.0.59
[INFO] [stderr]    Compiling bitflags v1.2.1
[INFO] [stderr]    Compiling itoa v0.4.6
[INFO] [stderr]    Compiling syn v1.0.45
[INFO] [stderr]    Compiling serde_derive v1.0.117
[INFO] [stderr]    Compiling unicode-width v0.1.8
[INFO] [stderr]    Compiling itertools v0.9.0
[INFO] [stderr]    Compiling same-file v1.0.6
[INFO] [stderr]    Compiling half v1.6.0
[INFO] [stderr]    Compiling textwrap v0.11.0
[INFO] [stderr]    Compiling regex-syntax v0.6.20
[INFO] [stderr]    Compiling walkdir v2.3.1
[INFO] [stderr]    Compiling semver v0.9.0
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling oorandom v11.1.2
[INFO] [stdout] warning: unused imports: `damerau_levenshtein`, `hamming`, `jaro_winkler`, `jaro`, `levenshtein`, `normalized_damerau_levenshtein`, `osa_distance`, and `sorensen_dice`
[INFO] [stdout]   --> src/lib.rs:13:14
[INFO] [stdout]    |
[INFO] [stdout] 13 | use strsim::{hamming, levenshtein, normalized_levenshtein, osa_distance,
[INFO] [stdout]    |              ^^^^^^^  ^^^^^^^^^^^                          ^^^^^^^^^^^^
[INFO] [stdout] 14 |              damerau_levenshtein, normalized_damerau_levenshtein, jaro,
[INFO] [stdout]    |              ^^^^^^^^^^^^^^^^^^^  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  ^^^^
[INFO] [stdout] 15 |              jaro_winkler, sorensen_dice};
[INFO] [stdout]    |              ^^^^^^^^^^^^  ^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Write`
[INFO] [stdout]  --> src/lib.rs:7:15
[INFO] [stdout]   |
[INFO] [stdout] 7 | use std::io::{Write, BufReader, BufRead};
[INFO] [stdout]   |               ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/lib.rs:259:13
[INFO] [stdout]     |
[INFO] [stdout] 259 |         let mut diff = 0;
[INFO] [stdout]     |             ----^^^^
[INFO] [stdout]     |             |
[INFO] [stdout]     |             help: remove this `mut`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_mut)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: enum `Nucleotide` is never used
[INFO] [stdout]   --> src/lib.rs:23:6
[INFO] [stdout]    |
[INFO] [stdout] 23 | enum Nucleotide {
[INFO] [stdout]    |      ^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated items `to_char` and `index_to_nt` are never used
[INFO] [stdout]   --> src/lib.rs:30:8
[INFO] [stdout]    |
[INFO] [stdout] 29 | impl Nucleotide {
[INFO] [stdout]    | --------------- associated items in this implementation
[INFO] [stdout] 30 |     fn to_char(&self) -> char {
[INFO] [stdout]    |        ^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 38 |     fn index_to_nt(index: usize) -> Result<Nucleotide, Error> {
[INFO] [stdout]    |        ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `check` is never used
[INFO] [stdout]   --> src/lib.rs:84:8
[INFO] [stdout]    |
[INFO] [stdout] 68 | impl Sequence {
[INFO] [stdout]    | ------------- method in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 84 |     fn check(&self) -> bool {
[INFO] [stdout]    |        ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `Result` that must be used
[INFO] [stdout]    --> src/lib.rs:309:9
[INFO] [stdout]     |
[INFO] [stdout] 309 |         write!(f, "File Name: {}\n", self.name);
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout]     = note: `#[warn(unused_must_use)]` on by default
[INFO] [stdout]     = note: this warning originates in the macro `write` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `Result` that must be used
[INFO] [stdout]    --> src/lib.rs:311:13
[INFO] [stdout]     |
[INFO] [stdout] 311 |             write!(f, "Header: {}\nSequence: {}\n\n", record.header, record.sequence);
[INFO] [stdout]     |             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout]     = note: this warning originates in the macro `write` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]    Compiling clap v2.33.3
[INFO] [stderr]    Compiling rustc_version v0.2.3
[INFO] [stderr]    Compiling regex-automata v0.1.9
[INFO] [stderr]    Compiling csv-core v0.1.10
[INFO] [stderr]    Compiling cast v0.2.3
[INFO] [stderr]    Compiling quote v1.0.7
[INFO] [stderr]    Compiling criterion-plot v0.4.3
[INFO] [stderr]    Compiling plotters v0.2.15
[INFO] [stderr]    Compiling regex v1.4.1
[INFO] [stderr]    Compiling bstr v0.2.14
[INFO] [stderr]    Compiling serde_cbor v0.11.1
[INFO] [stderr]    Compiling csv v1.1.3
[INFO] [stderr]    Compiling tinytemplate v1.1.0
[INFO] [stderr]    Compiling criterion v0.3.3
[INFO] [stderr]    Compiling rust-genomics v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `Sequence`
[INFO] [stdout]  --> src/main.rs:1:21
[INFO] [stdout]   |
[INFO] [stdout] 1 | use rust_genomics::{Sequence, FASTA};
[INFO] [stdout]   |                     ^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `damerau_levenshtein`, `hamming`, `jaro_winkler`, `jaro`, `levenshtein`, `normalized_damerau_levenshtein`, `osa_distance`, and `sorensen_dice`
[INFO] [stdout]   --> src/lib.rs:13:14
[INFO] [stdout]    |
[INFO] [stdout] 13 | use strsim::{hamming, levenshtein, normalized_levenshtein, osa_distance,
[INFO] [stdout]    |              ^^^^^^^  ^^^^^^^^^^^                          ^^^^^^^^^^^^
[INFO] [stdout] 14 |              damerau_levenshtein, normalized_damerau_levenshtein, jaro,
[INFO] [stdout]    |              ^^^^^^^^^^^^^^^^^^^  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  ^^^^
[INFO] [stdout] 15 |              jaro_winkler, sorensen_dice};
[INFO] [stdout]    |              ^^^^^^^^^^^^  ^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Write`
[INFO] [stdout]  --> src/lib.rs:7:15
[INFO] [stdout]   |
[INFO] [stdout] 7 | use std::io::{Write, BufReader, BufRead};
[INFO] [stdout]   |               ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/lib.rs:259:13
[INFO] [stdout]     |
[INFO] [stdout] 259 |         let mut diff = 0;
[INFO] [stdout]     |             ----^^^^
[INFO] [stdout]     |             |
[INFO] [stdout]     |             help: remove this `mut`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_mut)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: enum `Nucleotide` is never used
[INFO] [stdout]   --> src/lib.rs:23:6
[INFO] [stdout]    |
[INFO] [stdout] 23 | enum Nucleotide {
[INFO] [stdout]    |      ^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated items `to_char` and `index_to_nt` are never used
[INFO] [stdout]   --> src/lib.rs:30:8
[INFO] [stdout]    |
[INFO] [stdout] 29 | impl Nucleotide {
[INFO] [stdout]    | --------------- associated items in this implementation
[INFO] [stdout] 30 |     fn to_char(&self) -> char {
[INFO] [stdout]    |        ^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 38 |     fn index_to_nt(index: usize) -> Result<Nucleotide, Error> {
[INFO] [stdout]    |        ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `check` is never used
[INFO] [stdout]   --> src/lib.rs:84:8
[INFO] [stdout]    |
[INFO] [stdout] 68 | impl Sequence {
[INFO] [stdout]    | ------------- method in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 84 |     fn check(&self) -> bool {
[INFO] [stdout]    |        ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `Result` that must be used
[INFO] [stdout]    --> src/lib.rs:309:9
[INFO] [stdout]     |
[INFO] [stdout] 309 |         write!(f, "File Name: {}\n", self.name);
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout]     = note: `#[warn(unused_must_use)]` on by default
[INFO] [stdout]     = note: this warning originates in the macro `write` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `Result` that must be used
[INFO] [stdout]    --> src/lib.rs:311:13
[INFO] [stdout]     |
[INFO] [stdout] 311 |             write!(f, "Header: {}\nSequence: {}\n\n", record.header, record.sequence);
[INFO] [stdout]     |             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout]     = note: this warning originates in the macro `write` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 9.65s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: criterion v0.3.3
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
[INFO] running `Command { std: "docker" "inspect" "295e35d134a0e25ff32c49a406d957eda1869863bd809c5703f1fc526c1b81df", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "295e35d134a0e25ff32c49a406d957eda1869863bd809c5703f1fc526c1b81df", kill_on_drop: false }`
[INFO] [stdout] 295e35d134a0e25ff32c49a406d957eda1869863bd809c5703f1fc526c1b81df
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:86ea7c7af713d31e8cfdb68a6d0db50b5cf7cbeecde3d112f9f257f747318d36" "/opt/rustwide/cargo-home/bin/cargo" "+1.84.0" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 6b4d26a92a43e45476d2ca817c662eccab63bc59da8fe6238cc8ac1ba1b58422
[INFO] running `Command { std: "docker" "start" "-a" "6b4d26a92a43e45476d2ca817c662eccab63bc59da8fe6238cc8ac1ba1b58422", kill_on_drop: false }`
[INFO] [stderr] warning: unused imports: `damerau_levenshtein`, `hamming`, `jaro_winkler`, `jaro`, `levenshtein`, `normalized_damerau_levenshtein`, `osa_distance`, and `sorensen_dice`
[INFO] [stderr]   --> src/lib.rs:13:14
[INFO] [stderr]    |
[INFO] [stderr] 13 | use strsim::{hamming, levenshtein, normalized_levenshtein, osa_distance,
[INFO] [stderr]    |              ^^^^^^^  ^^^^^^^^^^^                          ^^^^^^^^^^^^
[INFO] [stderr] 14 |              damerau_levenshtein, normalized_damerau_levenshtein, jaro,
[INFO] [stderr]    |              ^^^^^^^^^^^^^^^^^^^  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  ^^^^
[INFO] [stderr] 15 |              jaro_winkler, sorensen_dice};
[INFO] [stderr]    |              ^^^^^^^^^^^^  ^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(unused_imports)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `Write`
[INFO] [stderr]  --> src/lib.rs:7:15
[INFO] [stderr]   |
[INFO] [stderr] 7 | use std::io::{Write, BufReader, BufRead};
[INFO] [stderr]   |               ^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: variable does not need to be mutable
[INFO] [stderr]    --> src/lib.rs:259:13
[INFO] [stderr]     |
[INFO] [stderr] 259 |         let mut diff = 0;
[INFO] [stderr]     |             ----^^^^
[INFO] [stderr]     |             |
[INFO] [stderr]     |             help: remove this `mut`
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(unused_mut)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: enum `Nucleotide` is never used
[INFO] [stderr]   --> src/lib.rs:23:6
[INFO] [stderr]    |
[INFO] [stderr] 23 | enum Nucleotide {
[INFO] [stderr]    |      ^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(dead_code)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: associated items `to_char` and `index_to_nt` are never used
[INFO] [stderr]   --> src/lib.rs:30:8
[INFO] [stderr]    |
[INFO] [stderr] 29 | impl Nucleotide {
[INFO] [stderr]    | --------------- associated items in this implementation
[INFO] [stderr] 30 |     fn to_char(&self) -> char {
[INFO] [stderr]    |        ^^^^^^^
[INFO] [stderr] ...
[INFO] [stderr] 38 |     fn index_to_nt(index: usize) -> Result<Nucleotide, Error> {
[INFO] [stderr]    |        ^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: method `check` is never used
[INFO] [stderr]   --> src/lib.rs:84:8
[INFO] [stderr]    |
[INFO] [stderr] 68 | impl Sequence {
[INFO] [stderr]    | ------------- method in this implementation
[INFO] [stderr] ...
[INFO] [stderr] 84 |     fn check(&self) -> bool {
[INFO] [stderr]    |        ^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: unused `Result` that must be used
[INFO] [stderr]    --> src/lib.rs:309:9
[INFO] [stderr]     |
[INFO] [stderr] 309 |         write!(f, "File Name: {}\n", self.name);
[INFO] [stderr]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stderr]     = note: `#[warn(unused_must_use)]` on by default
[INFO] [stderr]     = note: this warning originates in the macro `write` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: unused `Result` that must be used
[INFO] [stderr]    --> src/lib.rs:311:13
[INFO] [stderr]     |
[INFO] [stderr] 311 |             write!(f, "Header: {}\nSequence: {}\n\n", record.header, record.sequence);
[INFO] [stderr]     |             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stderr]     = note: this warning originates in the macro `write` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: `rust-genomics` (lib) generated 8 warnings (run `cargo fix --lib -p rust-genomics` to apply 2 suggestions)
[INFO] [stderr] warning: unused import: `Sequence`
[INFO] [stderr]  --> src/main.rs:1:21
[INFO] [stderr]   |
[INFO] [stderr] 1 | use rust_genomics::{Sequence, FASTA};
[INFO] [stderr]   |                     ^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: `rust-genomics` (lib test) generated 8 warnings (8 duplicates)
[INFO] [stderr] warning: `rust-genomics` (bin "rust-genomics" test) generated 1 warning (run `cargo fix --bin "rust-genomics" --tests` to apply 1 suggestion)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.05s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: criterion v0.3.3
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/rust_genomics-68e49f33ad15c8f5)
[INFO] [stdout] 
[INFO] [stdout] running 6 tests
[INFO] [stdout] test tests::compare_lorf_methods ... ignored
[INFO] [stdout] test tests::lorf ... ignored
[INFO] [stdout] test tests::test_rayon_fasta ... ignored
[INFO] [stdout] test tests::test_fasta_record_struct ... ok
[INFO] [stdout] test tests::test_sequence_struct ... ok
[INFO] [stdout] test tests::test_fasta_struct ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 3 passed; 0 failed; 3 ignored; 0 measured; 0 filtered out; finished in 0.07s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/rust_genomics-f5acdf230cb8a5d5)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests rust_genomics
[INFO] [stdout] 
[INFO] [stdout] running 3 tests
[INFO] [stdout] test src/lib.rs - Sequence::return_reading_frames (line 109) ... ignored
[INFO] [stdout] test src/lib.rs - Sequence::new (line 76) ... ok
[INFO] [stdout] test src/lib.rs - Sequence::gen_random_seq (line 244) ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 2 passed; 0 failed; 1 ignored; 0 measured; 0 filtered out; finished in 0.28s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "6b4d26a92a43e45476d2ca817c662eccab63bc59da8fe6238cc8ac1ba1b58422", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "6b4d26a92a43e45476d2ca817c662eccab63bc59da8fe6238cc8ac1ba1b58422", kill_on_drop: false }`
[INFO] [stdout] 6b4d26a92a43e45476d2ca817c662eccab63bc59da8fe6238cc8ac1ba1b58422