[INFO] cloning repository https://github.com/javieriserte/fam [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/javieriserte/fam" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fjavieriserte%2Ffam", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fjavieriserte%2Ffam'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] cd2839ca567d00c489bf2a53a027ccac6f126146 [INFO] testing javieriserte/fam against beta-2024-12-08 for beta-1.84.0-4 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fjavieriserte%2Ffam" "/workspace/builds/worker-5-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc2/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/javieriserte/fam on toolchain beta-2024-12-08 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2024-12-08" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/javieriserte/fam [INFO] finished tweaking git repo https://github.com/javieriserte/fam [INFO] tweaked toml for git repo https://github.com/javieriserte/fam written to /workspace/builds/worker-5-tc2/source/Cargo.toml [INFO] crate git repo https://github.com/javieriserte/fam already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2024-12-08" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:f3a9d4ad9d972b27faf3965f35b62e55ba32bbce8f20bc8fe909558a86702fde" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2024-12-08" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] e099530f446bfc8b888b74fd76a1254d53b9202db3e4fe0b49de8b8b9e9c9959 [INFO] running `Command { std: "docker" "start" "-a" "e099530f446bfc8b888b74fd76a1254d53b9202db3e4fe0b49de8b8b9e9c9959", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "e099530f446bfc8b888b74fd76a1254d53b9202db3e4fe0b49de8b8b9e9c9959", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e099530f446bfc8b888b74fd76a1254d53b9202db3e4fe0b49de8b8b9e9c9959", kill_on_drop: false }` [INFO] [stdout] e099530f446bfc8b888b74fd76a1254d53b9202db3e4fe0b49de8b8b9e9c9959 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:f3a9d4ad9d972b27faf3965f35b62e55ba32bbce8f20bc8fe909558a86702fde" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2024-12-08" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 0d3c415fcac95c5b6d4aa89bb283d7c75205b55e8515c171b02bc996ad98cbec [INFO] running `Command { std: "docker" "start" "-a" "0d3c415fcac95c5b6d4aa89bb283d7c75205b55e8515c171b02bc996ad98cbec", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.71 [INFO] [stderr] Compiling crossbeam-utils v0.8.1 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling memoffset v0.6.1 [INFO] [stderr] Compiling const_fn v0.4.5 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling rayon-core v1.9.0 [INFO] [stderr] Compiling scopeguard v1.1.0 [INFO] [stderr] Compiling byteorder v1.4.2 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling rayon v1.5.0 [INFO] [stderr] Compiling either v1.6.1 [INFO] [stderr] Compiling getrandom v0.2.2 [INFO] [stderr] Compiling miniz_oxide v0.4.3 [INFO] [stderr] Compiling adler32 v1.2.0 [INFO] [stderr] Compiling crc32fast v1.2.1 [INFO] [stderr] Compiling num-rational v0.3.2 [INFO] [stderr] Compiling num-iter v0.1.42 [INFO] [stderr] Compiling adler v0.2.3 [INFO] [stderr] Compiling piston-float v1.0.0 [INFO] [stderr] Compiling weezl v0.1.4 [INFO] [stderr] Compiling crossbeam-channel v0.5.0 [INFO] [stderr] Compiling miniz_oxide v0.3.7 [INFO] [stderr] Compiling crossbeam-epoch v0.9.1 [INFO] [stderr] Compiling num_cpus v1.13.0 [INFO] [stderr] Compiling rand_core v0.6.1 [INFO] [stderr] Compiling deflate v0.8.6 [INFO] [stderr] Compiling crossbeam-deque v0.8.0 [INFO] [stderr] Compiling approx v0.3.2 [INFO] [stderr] Compiling ordered-float v1.1.1 [INFO] [stderr] Compiling stb_truetype v0.3.1 [INFO] [stderr] Compiling ppv-lite86 v0.2.10 [INFO] [stderr] Compiling memchr v2.7.4 [INFO] [stderr] Compiling color_quant v1.1.0 [INFO] [stderr] Compiling rand_chacha v0.3.0 [INFO] [stderr] Compiling png v0.16.8 [INFO] [stderr] Compiling gif v0.11.1 [INFO] [stderr] Compiling rusttype v0.8.3 [INFO] [stderr] Compiling aho-corasick v1.1.3 [INFO] [stderr] Compiling piston-viewport v1.0.0 [INFO] [stderr] Compiling vecmath v1.0.0 [INFO] [stderr] Compiling scoped_threadpool v0.1.9 [INFO] [stderr] Compiling read_color v1.0.0 [INFO] [stderr] Compiling fnv v1.0.7 [INFO] [stderr] Compiling interpolation v0.2.0 [INFO] [stderr] Compiling unicode-width v0.1.7 [INFO] [stderr] Compiling regex-syntax v0.8.4 [INFO] [stderr] Compiling piston-texture v0.8.0 [INFO] [stderr] Compiling bytemuck v1.5.0 [INFO] [stderr] Compiling piston2d-graphics v0.37.0 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling rand v0.8.3 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling bit-vec v0.6.3 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling remove_dir_all v0.5.3 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling itertools v0.10.0 [INFO] [stderr] Compiling clap v2.33.1 [INFO] [stderr] Compiling tempfile v3.2.0 [INFO] [stderr] Compiling jpeg-decoder v0.1.22 [INFO] [stderr] Compiling tiff v0.6.1 [INFO] [stderr] Compiling regex-automata v0.4.7 [INFO] [stderr] Compiling image v0.23.13 [INFO] [stderr] Compiling regex v1.10.6 [INFO] [stderr] Compiling graphics_buffer v0.7.5 [INFO] [stderr] Compiling fam v0.0.7 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 53.04s [INFO] running `Command { std: "docker" "inspect" "0d3c415fcac95c5b6d4aa89bb283d7c75205b55e8515c171b02bc996ad98cbec", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0d3c415fcac95c5b6d4aa89bb283d7c75205b55e8515c171b02bc996ad98cbec", kill_on_drop: false }` [INFO] [stdout] 0d3c415fcac95c5b6d4aa89bb283d7c75205b55e8515c171b02bc996ad98cbec [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:f3a9d4ad9d972b27faf3965f35b62e55ba32bbce8f20bc8fe909558a86702fde" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2024-12-08" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 6ce43449660cac5371787ea3556a0ed475a73a5a7829e700dff06f56fd37d760 [INFO] running `Command { std: "docker" "start" "-a" "6ce43449660cac5371787ea3556a0ed475a73a5a7829e700dff06f56fd37d760", kill_on_drop: false }` [INFO] [stderr] Compiling fam v0.0.7 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 4.06s [INFO] running `Command { std: "docker" "inspect" "6ce43449660cac5371787ea3556a0ed475a73a5a7829e700dff06f56fd37d760", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "6ce43449660cac5371787ea3556a0ed475a73a5a7829e700dff06f56fd37d760", kill_on_drop: false }` [INFO] [stdout] 6ce43449660cac5371787ea3556a0ed475a73a5a7829e700dff06f56fd37d760 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:f3a9d4ad9d972b27faf3965f35b62e55ba32bbce8f20bc8fe909558a86702fde" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2024-12-08" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 7da175f3ab307485f4bb43c75660ee5bbb88ca58953e07e4a3ae19a593db152c [INFO] running `Command { std: "docker" "start" "-a" "7da175f3ab307485f4bb43c75660ee5bbb88ca58953e07e4a3ae19a593db152c", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.09s [INFO] [stderr] Running unittests src/lib/lib.rs (/opt/rustwide/target/debug/deps/famlib-63fa307066ac817d) [INFO] [stdout] [INFO] [stdout] running 110 tests [INFO] [stdout] test clustering::test::test_identity_fraction ... ok [INFO] [stdout] test conservation::test::test_entropy_proteins ... ok [INFO] [stdout] test degap::test::test_degap_alignment ... ok [INFO] [stdout] test clustering::test::test_clustering ... ok [INFO] [stdout] test conservation::test::test_iter_mut ... ok [INFO] [stdout] test degap::test::test_degap_alignment_with_dots ... ok [INFO] [stdout] test degap::test::test_degap_annotated_sequence ... ok [INFO] [stdout] test degap::test::test_degap_sequence_collection ... ok [INFO] [stdout] test edit::test::all_edit_operations ... ok [INFO] [stdout] test edit::test::delete_many_char_at_after_end ... ok [INFO] [stdout] test edit::test::delete_many_char_at_begging ... ok [INFO] [stdout] test edit::test::delete_many_char_at_end_passing_end ... ok [INFO] [stdout] test edit::test::delete_many_char_at_end_without_passing_end ... ok [INFO] [stdout] test edit::test::delete_many_char_at_middle ... ok [INFO] [stdout] test edit::test::delete_many_char_twice_at_middle ... ok [INFO] [stdout] test edit::test::delete_one_char_at_after_end ... ok [INFO] [stdout] test edit::test::delete_one_char_at_begging ... ok [INFO] [stdout] test edit::test::delete_one_char_at_end ... ok [INFO] [stdout] test edit::test::delete_zero_char_at_after_end ... ok [INFO] [stdout] test edit::test::delete_one_char_at_middle ... ok [INFO] [stdout] test edit::test::delete_zero_char_at_begging ... ok [INFO] [stdout] test edit::test::delete_zero_char_at_end ... ok [INFO] [stdout] test edit::test::delete_zero_char_at_middle ... ok [INFO] [stdout] test edit::test::insert_many_char_at_after_end ... ok [INFO] [stdout] test edit::test::insert_many_char_at_begging ... ok [INFO] [stdout] test edit::test::insert_many_char_at_end ... ok [INFO] [stdout] test edit::test::insert_one_char_at_after_end ... ok [INFO] [stdout] test edit::test::insert_one_char_at_begging ... ok [INFO] [stdout] test edit::test::replace_many_char_at_after_end ... ok [INFO] [stdout] test edit::test::replace_many_char_at_begging ... ok [INFO] [stdout] test edit::test::replace_many_char_at_middle ... ok [INFO] [stdout] test edit::test::replace_many_char_twice_at_middle ... ok [INFO] [stdout] test edit::test::insert_many_char_at_middle ... ok [INFO] [stdout] test edit::test::insert_many_char_twice_at_middle ... ok [INFO] [stdout] test edit::test::insert_one_char_at_end ... ok [INFO] [stdout] test edit::test::insert_one_char_at_middle ... ok [INFO] [stdout] test edit::test::replace_many_char_at_end_passing_end ... ok [INFO] [stdout] test edit::test::replace_many_char_at_end_without_passing_end ... ok [INFO] [stdout] test edit::test::replace_one_char_at_begging ... ok [INFO] [stdout] test edit::test::replace_one_char_at_after_end ... ok [INFO] [stdout] test edit::test::replace_one_char_at_end ... ok [INFO] [stdout] test edit::test::replace_one_char_at_middle ... ok [INFO] [stdout] test edit::test::replace_zero_char_at_begging ... ok [INFO] [stdout] test edit::test::replace_zero_char_at_middle ... ok [INFO] [stdout] test edit_msa::test::insert_columns_with_wrong_size ... ok [INFO] [stdout] test edit_msa::test::insert_empty_many_column_at_any_position ... ok [INFO] [stdout] test edit_msa::test::insert_empty_many_rows_at_any_position ... ok [INFO] [stdout] test edit_msa::test::insert_empty_one_column_at_any_position ... ok [INFO] [stdout] test edit_msa::test::insert_empty_many_rows_fails_with_repeated_names ... ok [INFO] [stdout] test edit_msa::test::insert_empty_one_rows_at_any_position ... ok [INFO] [stdout] test edit::test::replace_zero_char_at_after_end ... ok [INFO] [stdout] test edit_msa::test::insert_empty_zero_rows_at_any_position ... ok [INFO] [stdout] test edit_msa::test::insert_one_column ... ok [INFO] [stdout] test edit_msa::test::insert_many_columns ... ok [INFO] [stdout] test edit_msa::test::remove_many_columns ... ok [INFO] [stdout] test edit_msa::test::insert_zero_columns ... ok [INFO] [stdout] test edit_msa::test::remove_one_columns ... ok [INFO] [stdout] test edit_msa::test::remove_many_rows ... ok [INFO] [stdout] test edit_msa::test::remove_one_row ... ok [INFO] [stdout] test edit_msa::test::remove_rows_many_times ... ok [INFO] [stdout] test edit_msa::test::remove_zero_columns ... ok [INFO] [stdout] test edit_msa::test::remove_zero_rows ... ok [INFO] [stdout] test edit_msa::test::replace_with_content ... ok [INFO] [stdout] test edit_msa::test::replace_with_empty_content ... ok [INFO] [stdout] test edit_msa::test::replace_whole_content ... ok [INFO] [stdout] test edit_msa::test::replace_with_big_content ... ok [INFO] [stdout] test fastaio::test::test_sequence_collection_from_bufread_when_ok ... ok [INFO] [stdout] test edit_msa::test::transpose_vector_test ... ok [INFO] [stdout] test gapping::test::test_pad_alignment ... ok [INFO] [stdout] test filter::test::test_filter_seqcol_case_sentitive ... ok [INFO] [stdout] test gapping::test::test_pad_annotated_sequence ... ok [INFO] [stdout] test gapping::test::test_pad_sequence_collection ... ok [INFO] [stdout] test matrices::substitution_matrix::test::test_protmatrix_with_one_column_all_different ... ok [INFO] [stdout] test matrices::substitution_matrix::test::test_protmatrix_with_one_column_all_equals ... ok [INFO] [stdout] test matrices::substitution_matrix::test::test_protmatrix_with_one_column_one_diff ... ok [INFO] [stdout] test matrices::substitution_matrix::test::test_protmatrix_with_one_column_one_pair ... ok [INFO] [stdout] test matrices::substitution_matrix::test::test_protmatrix_with_one_column_with_pairs ... ok [INFO] [stdout] test matrices::substitution_matrix::test::test_protmatrix_with_two_columns ... ok [INFO] [stdout] test matrices::triangular_matrix::test::test_get_set ... ok [INFO] [stdout] test matrices::triangular_matrix::test::test_linear_to_xy_coord ... ok [INFO] [stdout] test matrices::triangular_matrix::test::test_new ... ok [INFO] [stdout] test matrices::triangular_matrix::test::test_xy_to_linear_coord ... ok [INFO] [stdout] test merge::test::concat_fails_with_different_ids ... ok [INFO] [stdout] test merge::test::concat_fails_with_less_seqs ... ok [INFO] [stdout] test merge::test::concat_returns_the_same_with_one_sequence ... ok [INFO] [stdout] test matrices::triangular_matrix::test::test_increment ... ok [INFO] [stdout] test merge::test::concat_with_two_seqcol_input ... ok [INFO] [stdout] test merge::test::join_fails_with_two_equal_ids ... ok [INFO] [stdout] test merge::test::join_returns_the_same_with_one_seqcol_input ... ok [INFO] [stdout] test merge::test::join_with_two_seqcol_input ... ok [INFO] [stdout] test plotting::test::test_plotter_creation ... ok [INFO] [stdout] test random::test::test_random_empty_msa ... ok [INFO] [stdout] test edit_msa::test::insert_empty_zero_columns_at_any_position ... ok [INFO] [stdout] test random::test::test_random_msa_with_no_fixed_gaps ... ok [INFO] [stdout] test random::test::test_random_msa_with_fixed_gaps ... ok [INFO] [stdout] test edit::test::replace_zero_char_at_end ... ok [INFO] [stdout] test seqs::test_column_iterator ... ok [INFO] [stdout] test seqs::test_sequence_iterator ... ok [INFO] [stdout] test test::reorder_equal_order ... ok [INFO] [stdout] test test::reorder_inverse_order ... ok [INFO] [stdout] test test::reorder_random_order ... ok [INFO] [stdout] test test::reorder_with_big_indexes ... ok [INFO] [stdout] test test::reorder_with_few_indexes ... ok [INFO] [stdout] test test::reorder_with_repeated_indexes ... ok [INFO] [stdout] test test::test_display_msa ... ok [INFO] [stdout] test test::test_display_seq_col ... ok [INFO] [stdout] test matrices::substitution_matrix::test::test_protmatrix_with_two_columns_with_gaps ... ok [INFO] [stdout] test filter::test::test_filter_seqcol_case_insentitive ... ok [INFO] [stdout] test filter::test::test_filter_seqcol_case_insentitive_exclude ... ok [INFO] [stdout] test plotting::test::test_plotter_images ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 110 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.06s [INFO] [stdout] [INFO] [stderr] Doc-tests famlib [INFO] [stdout] [INFO] [stdout] running 24 tests [INFO] [stdout] test src/lib/lib.rs - seqs::AnnotatedSequence::new (line 104) ... ok [INFO] [stdout] test src/lib/lib.rs - seqs::AnnotatedSequence::id (line 271) ... ok [INFO] [stdout] test src/lib/lib.rs - seqs::AnnotatedSequence::len (line 228) ... ok [INFO] [stdout] test src/lib/lib.rs - seqs::AnnotatedSequence::empty (line 130) ... ok [INFO] [stdout] test src/lib/lib.rs - seqs::AnnotatedSequence::is_empty (line 245) ... ok [INFO] [stdout] test src/lib/lib.rs - seqs::Alignment::gapstrip (line 955) ... ok [INFO] [stdout] test src/lib/clustering.rs - clustering::identity_fraction (line 45) ... ok [INFO] [stdout] test src/lib/lib.rs - seqs::AnnotatedSequence::seq (line 198) ... ok [INFO] [stdout] test src/lib/lib.rs - seqs::SequenceCollection::add (line 437) ... FAILED [INFO] [stdout] test src/lib/lib.rs - seqs::AnnotatedSequence::set_id (line 186) ... ok [INFO] [stdout] test src/lib/lib.rs - seqs::SequenceCollection (line 724) ... ok [INFO] [stdout] test src/lib/lib.rs - seqs::AnnotatedSequence::set_sequence (line 141) ... ok [INFO] [stdout] test src/lib/lib.rs - seqs::AnnotatedSequence::take_sequence (line 170) ... ok [INFO] [stdout] test src/lib/lib.rs - seqs::AnnotatedSequence::seq_copy (line 255) ... ok [INFO] [stdout] test src/lib/lib.rs - seqs::SequenceCollection::get (line 484) ... ok [INFO] [stdout] test src/lib/lib.rs - seqs::SequenceCollection (line 673) ... ok [INFO] [stdout] test src/lib/lib.rs - seqs::SequenceCollection::get_by_id (line 500) ... ok [INFO] [stdout] test src/lib/lib.rs - seqs::SequenceCollection::new (line 289) ... ok [INFO] [stdout] test src/lib/lib.rs - seqs::SequenceCollection::remove_by_id (line 523) ... ok [INFO] [stdout] test src/lib/lib.rs - seqs::SequenceCollection::move_up (line 558) ... ok [INFO] [stdout] test src/lib/matrices/triangular_matrix.rs - matrices::triangular_matrix::One (line 10) ... ok [INFO] [stdout] test src/lib/lib.rs - seqs::SequenceCollection::size (line 467) ... ok [INFO] [stdout] test src/lib/lib.rs - seqs::SequenceCollection::get_mut (line 609) ... ok [INFO] [stdout] test src/lib/lib.rs - seqs::SequenceCollection::insert (line 401) ... ok [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- src/lib/lib.rs - seqs::SequenceCollection::add (line 437) stdout ---- [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: LC_ALL="C" PATH="/opt/rustwide/rustup-home/toolchains/beta-2024-12-08-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/bin:/opt/rustwide/cargo-home/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin" VSLANG="1033" "cc" "-m64" "/tmp/rustcUsf3WB/symbols.o" "/tmp/rustdoctest9wROxe/rust_out.rust_out.9242fac72db2cd11-cgu.0.rcgu.o" "/tmp/rustdoctest9wROxe/rust_out.2hl2tb9xdtge7mguxzn2q1kvi.rcgu.o" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/libfamlib-fc69512835d10f3c.rlib" "/opt/rustwide/target/debug/deps/libregex-d4083389bcfd554e.rlib" "/opt/rustwide/target/debug/deps/libregex_automata-61dd60b724832874.rlib" "/opt/rustwide/target/debug/deps/libaho_corasick-5a18c24d288bad01.rlib" "/opt/rustwide/target/debug/deps/libmemchr-d6cb21f6c03ed32f.rlib" "/opt/rustwide/target/debug/deps/libregex_syntax-5d76419fd7f8486a.rlib" "/opt/rustwide/target/debug/deps/libitertools-bffb9d8ec81f2aa8.rlib" "/opt/rustwide/target/debug/deps/libgraphics_buffer-9be8297d1624c6b7.rlib" "/opt/rustwide/target/debug/deps/libimage-df6db1bbe2e7bd40.rlib" "/opt/rustwide/target/debug/deps/libbytemuck-5e193a72839317f2.rlib" "/opt/rustwide/target/debug/deps/libpng-a41a2694ac2b5233.rlib" "/opt/rustwide/target/debug/deps/libminiz_oxide-20067e9d4eb649d0.rlib" "/opt/rustwide/target/debug/deps/libcrc32fast-c16d2a96f7148b0b.rlib" "/opt/rustwide/target/debug/deps/libdeflate-136bd541e2e67b2d.rlib" "/opt/rustwide/target/debug/deps/libadler32-69fdd68b0d4b86c1.rlib" "/opt/rustwide/target/debug/deps/libbitflags-53f2c2e16beb276c.rlib" "/opt/rustwide/target/debug/deps/libnum_iter-12563af2ebb8917e.rlib" "/opt/rustwide/target/debug/deps/libscoped_threadpool-293da0d486a11c11.rlib" "/opt/rustwide/target/debug/deps/libnum_rational-ad26b4353f9993bd.rlib" "/opt/rustwide/target/debug/deps/libnum_integer-fd879ee50f5ab16c.rlib" "/opt/rustwide/target/debug/deps/libgif-94f9017c27388418.rlib" "/opt/rustwide/target/debug/deps/libcolor_quant-da6050448bfc3046.rlib" "/opt/rustwide/target/debug/deps/libtiff-27f761c4c1943228.rlib" "/opt/rustwide/target/debug/deps/libweezl-897f245ca118fd09.rlib" "/opt/rustwide/target/debug/deps/libminiz_oxide-ca44cb0179c36453.rlib" "/opt/rustwide/target/debug/deps/libadler-9086340094c99e83.rlib" "/opt/rustwide/target/debug/deps/libjpeg_decoder-785bcf8c9b3e78e6.rlib" "/opt/rustwide/target/debug/deps/librayon-667d6168a46c2b60.rlib" "/opt/rustwide/target/debug/deps/librayon_core-15939c736f2f3243.rlib" "/opt/rustwide/target/debug/deps/libnum_cpus-83501dc84c03463d.rlib" "/opt/rustwide/target/debug/deps/libcrossbeam_deque-0298515d081ee971.rlib" "/opt/rustwide/target/debug/deps/libcrossbeam_epoch-aca79ff07e933661.rlib" "/opt/rustwide/target/debug/deps/libmemoffset-27a55686b397df5f.rlib" "/opt/rustwide/target/debug/deps/libscopeguard-31f1b56a39f2a372.rlib" "/opt/rustwide/target/debug/deps/libcrossbeam_channel-7595062993bd5cb0.rlib" "/opt/rustwide/target/debug/deps/libcrossbeam_utils-ba91670e5afd46d3.rlib" "/opt/rustwide/target/debug/deps/liblazy_static-efa3519517df6cf0.rlib" "/opt/rustwide/target/debug/deps/libeither-8184e77a300434cc.rlib" "/opt/rustwide/target/debug/deps/libbit_vec-a0398f191924b60c.rlib" "/opt/rustwide/target/debug/deps/libtempfile-373973296d791fb1.rlib" "/opt/rustwide/target/debug/deps/libremove_dir_all-a4df0c6439de3059.rlib" "/opt/rustwide/target/debug/deps/libgraphics-318174be43f43fb6.rlib" "/opt/rustwide/target/debug/deps/libfnv-953831fe314029b4.rlib" "/opt/rustwide/target/debug/deps/librusttype-2a46784e86f640b9.rlib" "/opt/rustwide/target/debug/deps/libstb_truetype-4ade8c7e000388e5.rlib" "/opt/rustwide/target/debug/deps/libbyteorder-98a6adb9ab8075d5.rlib" "/opt/rustwide/target/debug/deps/libordered_float-a2bf680174e20a73.rlib" "/opt/rustwide/target/debug/deps/libapprox-98374d9cff61b895.rlib" "/opt/rustwide/target/debug/deps/libnum_traits-d457080c2f92e6b5.rlib" "/opt/rustwide/target/debug/deps/libviewport-27178217a4acce60.rlib" "/opt/rustwide/target/debug/deps/libinterpolation-a7fdca8aef03569e.rlib" "/opt/rustwide/target/debug/deps/libread_color-fef82e3b24bd48c6.rlib" "/opt/rustwide/target/debug/deps/libtexture-24b38a9ac45f8c93.rlib" "/opt/rustwide/target/debug/deps/libvecmath-1aa5da78536e4770.rlib" "/opt/rustwide/target/debug/deps/libfloat-2887be2de28acbd3.rlib" "/opt/rustwide/target/debug/deps/librand-5bf40a2c082f3a9b.rlib" "/opt/rustwide/target/debug/deps/librand_chacha-3583e9e1dbe5b3bf.rlib" "/opt/rustwide/target/debug/deps/libppv_lite86-59f165f8be995b18.rlib" "/opt/rustwide/target/debug/deps/librand_core-6949b9d51b8c6689.rlib" "/opt/rustwide/target/debug/deps/libgetrandom-3c341e4f283688d1.rlib" "/opt/rustwide/target/debug/deps/liblibc-04098b72da8eefd3.rlib" "/opt/rustwide/target/debug/deps/libcfg_if-a3e7e701fcd1f47b.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-12-08-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libstd-02dc84f49135b6b8.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-12-08-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libpanic_unwind-a8f45b397fae3f81.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-12-08-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libobject-089607133c180609.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-12-08-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libmemchr-fc89f091bcd86cbb.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-12-08-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libaddr2line-5a60949f01c7340c.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-12-08-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libgimli-d29e6a55ca253c8c.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-12-08-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_demangle-273c078d5f65de7a.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-12-08-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libstd_detect-413c950ffbdd4454.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-12-08-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libhashbrown-1853c0976a1d88a6.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-12-08-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_alloc-ccb3384ddacb0f9e.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-12-08-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libminiz_oxide-0b901dfb0ca849e0.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-12-08-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libadler-eebeb8d7c64543ad.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-12-08-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libunwind-4723ef81d6079867.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-12-08-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcfg_if-54442f8b422f5a54.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-12-08-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/liblibc-e0bbe034b5282553.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-12-08-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/liballoc-d0febb68c1c37b90.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-12-08-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_core-4cf833632aafa84c.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-12-08-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcore-65c2c6d2d6ae570b.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-12-08-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcompiler_builtins-97929cee0dcfe424.rlib" "-Wl,-Bdynamic" "-lutil" "-ldl" "-lutil" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/rustup-home/toolchains/beta-2024-12-08-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/tmp/rustdoctest9wROxe/rust_out" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" [INFO] [stdout] = note: collect2: fatal error: ld terminated with signal 9 [Killed] [INFO] [stdout] compilation terminated. [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 1 previous error [INFO] [stdout] [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] src/lib/lib.rs - seqs::SequenceCollection::add (line 437) [INFO] [stdout] [INFO] [stdout] test result: FAILED. 23 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out; finished in 33.19s [INFO] [stdout] [INFO] [stderr] error: doctest failed, to rerun pass `--doc` [INFO] running `Command { std: "docker" "inspect" "7da175f3ab307485f4bb43c75660ee5bbb88ca58953e07e4a3ae19a593db152c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7da175f3ab307485f4bb43c75660ee5bbb88ca58953e07e4a3ae19a593db152c", kill_on_drop: false }` [INFO] [stdout] 7da175f3ab307485f4bb43c75660ee5bbb88ca58953e07e4a3ae19a593db152c