[INFO] fetching crate deepbiop-bam 0.1.11...
[INFO] testing deepbiop-bam-0.1.11 against 1.83.0 for beta-1.84.0-4-retry
[INFO] extracting crate deepbiop-bam 0.1.11 into /workspace/builds/worker-2-tc1/source
[INFO] validating manifest of crates.io crate deepbiop-bam 0.1.11 on toolchain 1.83.0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.83.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate deepbiop-bam 0.1.11
[INFO] finished tweaking crates.io crate deepbiop-bam 0.1.11
[INFO] tweaked toml for crates.io crate deepbiop-bam 0.1.11 written to /workspace/builds/worker-2-tc1/source/Cargo.toml
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.83.0" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]      Locking 292 packages to latest compatible versions
[INFO] [stderr]       Adding lexical v6.1.1 (available: v7.0.4)
[INFO] [stderr]       Adding noodles v0.79.0 (available: v0.86.0)
[INFO] [stderr]       Adding pyo3 v0.21.2 (available: v0.23.3)
[INFO] [stderr]       Adding zstd-sys v2.0.12+zstd.1.5.6 (available: v2.0.13+zstd.1.5.6)
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.83.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded pyo3-stub-gen v0.6.1
[INFO] [stderr]   Downloaded noodles-csi v0.37.0
[INFO] [stderr]   Downloaded noodles v0.79.0
[INFO] [stderr]   Downloaded pyo3-stub-gen-derive v0.6.1
[INFO] [stderr]   Downloaded noodles-fastq v0.14.0
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded noodles-fasta v0.42.0
[INFO] [stderr]   Downloaded deepbiop-utils v0.1.11
[INFO] [stderr]   Downloaded buffer-redux v1.0.2
[INFO] [stderr]   Downloaded noodles-bam v0.66.0
[INFO] [stderr]   Downloaded needletail v0.5.1
[INFO] [stderr]   Downloaded editdistancek v1.0.2
[INFO] [stderr]   Downloaded statrs v0.17.1
[INFO] [stderr]   Downloaded noodles-bgzf v0.32.0
[INFO] [stderr]   Downloaded bio v2.0.3
[INFO] [stderr]   Downloaded noodles-sam v0.63.0
[INFO] [stderr]   Downloaded deepbiop-fq v0.1.11
[INFO] [stderr]   Downloaded parquet v52.2.0
[INFO] [stderr]   Downloaded noodles-core v0.15.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:f3a9d4ad9d972b27faf3965f35b62e55ba32bbce8f20bc8fe909558a86702fde" "/opt/rustwide/cargo-home/bin/cargo" "+1.83.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 05f93ae0e038bee6a518c06e04fefa94a51a01eb0b5a262624eb5350f256b609
[INFO] running `Command { std: "docker" "start" "-a" "05f93ae0e038bee6a518c06e04fefa94a51a01eb0b5a262624eb5350f256b609", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "05f93ae0e038bee6a518c06e04fefa94a51a01eb0b5a262624eb5350f256b609", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "05f93ae0e038bee6a518c06e04fefa94a51a01eb0b5a262624eb5350f256b609", kill_on_drop: false }`
[INFO] [stdout] 05f93ae0e038bee6a518c06e04fefa94a51a01eb0b5a262624eb5350f256b609
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:f3a9d4ad9d972b27faf3965f35b62e55ba32bbce8f20bc8fe909558a86702fde" "/opt/rustwide/cargo-home/bin/cargo" "+1.83.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] b53ef97d6e5aabc44c5817912a5e29ad87fccdca390a8ae8fb49da4a2f71a773
[INFO] running `Command { std: "docker" "start" "-a" "b53ef97d6e5aabc44c5817912a5e29ad87fccdca390a8ae8fb49da4a2f71a773", kill_on_drop: false }`
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[INFO] [stderr]    Compiling noodles-bam v0.66.0
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[INFO] [stderr]    Compiling deepbiop-fq v0.1.11
[INFO] [stderr]    Compiling deepbiop-bam v0.1.11 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 45s
[INFO] running `Command { std: "docker" "inspect" "b53ef97d6e5aabc44c5817912a5e29ad87fccdca390a8ae8fb49da4a2f71a773", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b53ef97d6e5aabc44c5817912a5e29ad87fccdca390a8ae8fb49da4a2f71a773", kill_on_drop: false }`
[INFO] [stdout] b53ef97d6e5aabc44c5817912a5e29ad87fccdca390a8ae8fb49da4a2f71a773
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:f3a9d4ad9d972b27faf3965f35b62e55ba32bbce8f20bc8fe909558a86702fde" "/opt/rustwide/cargo-home/bin/cargo" "+1.83.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 30d20a40fb4a6ae688e105c648e45c5cce0f84fdd1c9266d79021353fbd3adc8
[INFO] running `Command { std: "docker" "start" "-a" "30d20a40fb4a6ae688e105c648e45c5cce0f84fdd1c9266d79021353fbd3adc8", kill_on_drop: false }`
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[INFO] [stderr]    Compiling bstr v1.11.1
[INFO] [stderr]    Compiling regex v1.11.1
[INFO] [stderr]    Compiling arrow-string v52.2.0
[INFO] [stderr]    Compiling arrow-csv v52.2.0
[INFO] [stderr]    Compiling bio-types v1.0.4
[INFO] [stderr]    Compiling pyo3-stub-gen v0.6.1
[INFO] [stderr]    Compiling noodles-core v0.15.0
[INFO] [stderr]    Compiling noodles-fastq v0.14.0
[INFO] [stderr]    Compiling arrow v52.2.0
[INFO] [stderr]    Compiling noodles-csi v0.37.0
[INFO] [stderr]    Compiling noodles-fasta v0.42.0
[INFO] [stderr]    Compiling deepbiop-utils v0.1.11
[INFO] [stderr]    Compiling noodles-sam v0.63.0
[INFO] [stderr]    Compiling noodles-bam v0.66.0
[INFO] [stderr]    Compiling nalgebra v0.32.6
[INFO] [stderr]    Compiling noodles v0.79.0
[INFO] [stderr]    Compiling deepbiop-fq v0.1.11
[INFO] [stderr]    Compiling deepbiop-bam v0.1.11 (/opt/rustwide/workdir)
[INFO] [stderr]    Compiling statrs v0.17.1
[INFO] [stderr]    Compiling bio v2.0.3
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 43.76s
[INFO] running `Command { std: "docker" "inspect" "30d20a40fb4a6ae688e105c648e45c5cce0f84fdd1c9266d79021353fbd3adc8", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "30d20a40fb4a6ae688e105c648e45c5cce0f84fdd1c9266d79021353fbd3adc8", kill_on_drop: false }`
[INFO] [stdout] 30d20a40fb4a6ae688e105c648e45c5cce0f84fdd1c9266d79021353fbd3adc8
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:f3a9d4ad9d972b27faf3965f35b62e55ba32bbce8f20bc8fe909558a86702fde" "/opt/rustwide/cargo-home/bin/cargo" "+1.83.0" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 068e8aad748d2ca25e2462911ee261af16c38ae02c85026b72a835a8106e89a3
[INFO] running `Command { std: "docker" "start" "-a" "068e8aad748d2ca25e2462911ee261af16c38ae02c85026b72a835a8106e89a3", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.27s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/deepbiop_bam-09c41ef680af4154)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests deepbiop_bam
[INFO] [stdout] 
[INFO] [stdout] running 2 tests
[INFO] [stdout] test src/chimeric/event.rs - chimeric::event::ChimericEvent::from_str (line 130) ... ok
[INFO] [stdout] test src/chimeric/event.rs - chimeric::event::ChimericEvent::parse_sa_tag (line 50) ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 2 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 2.91s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "068e8aad748d2ca25e2462911ee261af16c38ae02c85026b72a835a8106e89a3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "068e8aad748d2ca25e2462911ee261af16c38ae02c85026b72a835a8106e89a3", kill_on_drop: false }`
[INFO] [stdout] 068e8aad748d2ca25e2462911ee261af16c38ae02c85026b72a835a8106e89a3
