[INFO] cloning repository https://github.com/lgi-onehealth/phcue-qc
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/lgi-onehealth/phcue-qc" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Flgi-onehealth%2Fphcue-qc", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Flgi-onehealth%2Fphcue-qc'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] d5810d5e1714d5b70501b507a4fc9ed96e8c50d5
[INFO] testing lgi-onehealth/phcue-qc against 1.83.0 for beta-1.84.0-4-retry
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Flgi-onehealth%2Fphcue-qc" "/workspace/builds/worker-1-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc1/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/lgi-onehealth/phcue-qc on toolchain 1.83.0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.83.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/lgi-onehealth/phcue-qc
[INFO] finished tweaking git repo https://github.com/lgi-onehealth/phcue-qc
[INFO] tweaked toml for git repo https://github.com/lgi-onehealth/phcue-qc written to /workspace/builds/worker-1-tc1/source/Cargo.toml
[INFO] crate git repo https://github.com/lgi-onehealth/phcue-qc already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.83.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded fastq v0.6.0
[INFO] [stderr]   Downloaded find_peaks v0.1.5
[INFO] [stderr]   Downloaded clap v3.2.10
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:f3a9d4ad9d972b27faf3965f35b62e55ba32bbce8f20bc8fe909558a86702fde" "/opt/rustwide/cargo-home/bin/cargo" "+1.83.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 1cee698311095f3137c3f0439c089eba2d71f345fa5c8ddec39df0c0ab957e98
[INFO] running `Command { std: "docker" "start" "-a" "1cee698311095f3137c3f0439c089eba2d71f345fa5c8ddec39df0c0ab957e98", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "1cee698311095f3137c3f0439c089eba2d71f345fa5c8ddec39df0c0ab957e98", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "1cee698311095f3137c3f0439c089eba2d71f345fa5c8ddec39df0c0ab957e98", kill_on_drop: false }`
[INFO] [stdout] 1cee698311095f3137c3f0439c089eba2d71f345fa5c8ddec39df0c0ab957e98
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:f3a9d4ad9d972b27faf3965f35b62e55ba32bbce8f20bc8fe909558a86702fde" "/opt/rustwide/cargo-home/bin/cargo" "+1.83.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 0c7b89a177aea02e1c8eafb7d93d7cdb04e8ae8d88246d2b709270a2859ef475
[INFO] running `Command { std: "docker" "start" "-a" "0c7b89a177aea02e1c8eafb7d93d7cdb04e8ae8d88246d2b709270a2859ef475", kill_on_drop: false }`
[INFO] [stderr]    Compiling autocfg v1.1.0
[INFO] [stderr]    Compiling proc-macro2 v1.0.40
[INFO] [stderr]    Compiling cc v1.0.73
[INFO] [stderr]    Compiling quote v1.0.20
[INFO] [stderr]    Compiling unicode-ident v1.0.1
[INFO] [stderr]    Compiling libc v0.2.126
[INFO] [stderr]    Compiling version_check v0.9.4
[INFO] [stderr]    Compiling syn v1.0.98
[INFO] [stderr]    Compiling cfg-if v1.0.0
[INFO] [stderr]    Compiling pkg-config v0.3.25
[INFO] [stderr]    Compiling memchr v2.5.0
[INFO] [stderr]    Compiling crc32fast v1.3.2
[INFO] [stderr]    Compiling adler v1.0.2
[INFO] [stderr]    Compiling serde_derive v1.0.139
[INFO] [stderr]    Compiling crossbeam-utils v0.8.10
[INFO] [stderr]    Compiling once_cell v1.13.0
[INFO] [stderr]    Compiling hashbrown v0.12.2
[INFO] [stderr]    Compiling miniz_oxide v0.5.3
[INFO] [stderr]    Compiling serde v1.0.139
[INFO] [stderr]    Compiling parking_lot_core v0.9.3
[INFO] [stderr]    Compiling arrayvec v0.4.12
[INFO] [stderr]    Compiling minimal-lexical v0.2.1
[INFO] [stderr]    Compiling lock_api v0.4.7
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling num-traits v0.2.15
[INFO] [stderr]    Compiling indexmap v1.9.1
[INFO] [stderr]    Compiling nodrop v0.1.14
[INFO] [stderr]    Compiling scopeguard v1.1.0
[INFO] [stderr]    Compiling heck v0.4.0
[INFO] [stderr]    Compiling serde_json v1.0.82
[INFO] [stderr]    Compiling smallvec v1.9.0
[INFO] [stderr]    Compiling os_str_bytes v6.1.0
[INFO] [stderr]    Compiling base64 v0.13.0
[INFO] [stderr]    Compiling libz-sys v1.1.8
[INFO] [stderr]    Compiling lz4-sys v1.9.3
[INFO] [stderr]    Compiling crossbeam-channel v0.5.5
[INFO] [stderr]    Compiling itoa v0.4.8
[INFO] [stderr]    Compiling termcolor v1.1.3
[INFO] [stderr]    Compiling bitflags v1.3.2
[INFO] [stderr]    Compiling clap_lex v0.2.4
[INFO] [stderr]    Compiling byteorder v1.4.3
[INFO] [stderr]    Compiling strsim v0.10.0
[INFO] [stderr]    Compiling flate2 v1.0.24
[INFO] [stderr]    Compiling itoa v1.0.2
[INFO] [stderr]    Compiling ryu v1.0.10
[INFO] [stderr]    Compiling textwrap v0.15.0
[INFO] [stderr]    Compiling num-format v0.4.0
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling nom v7.1.1
[INFO] [stderr]    Compiling find_peaks v0.1.5
[INFO] [stderr]    Compiling dashmap v5.3.4
[INFO] [stderr]    Compiling hdrhistogram v7.5.0
[INFO] [stderr]    Compiling clap_derive v3.2.7
[INFO] [stderr]    Compiling clap v3.2.10
[INFO] [stderr]    Compiling lz4 v1.23.3
[INFO] [stderr]    Compiling fastq v0.6.0
[INFO] [stderr]    Compiling phcue-qc v0.3.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused variable: `min_count`
[INFO] [stdout]   --> src/main.rs:96:61
[INFO] [stdout]    |
[INFO] [stdout] 96 |     fn get_depth_coverage(&mut self, hist: &Histogram<u64>, min_count: &u64) {
[INFO] [stdout]    |                                                             ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_min_count`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 30.15s
[INFO] running `Command { std: "docker" "inspect" "0c7b89a177aea02e1c8eafb7d93d7cdb04e8ae8d88246d2b709270a2859ef475", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "0c7b89a177aea02e1c8eafb7d93d7cdb04e8ae8d88246d2b709270a2859ef475", kill_on_drop: false }`
[INFO] [stdout] 0c7b89a177aea02e1c8eafb7d93d7cdb04e8ae8d88246d2b709270a2859ef475
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:f3a9d4ad9d972b27faf3965f35b62e55ba32bbce8f20bc8fe909558a86702fde" "/opt/rustwide/cargo-home/bin/cargo" "+1.83.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 9a541d7be4d7cce10dfd670a5ae0614b1750c2e5f0ee6105a6fcbdf042dc1eff
[INFO] running `Command { std: "docker" "start" "-a" "9a541d7be4d7cce10dfd670a5ae0614b1750c2e5f0ee6105a6fcbdf042dc1eff", kill_on_drop: false }`
[INFO] [stderr]    Compiling phcue-qc v0.3.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused variable: `min_count`
[INFO] [stdout]   --> src/main.rs:96:61
[INFO] [stdout]    |
[INFO] [stdout] 96 |     fn get_depth_coverage(&mut self, hist: &Histogram<u64>, min_count: &u64) {
[INFO] [stdout]    |                                                             ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_min_count`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.68s
[INFO] running `Command { std: "docker" "inspect" "9a541d7be4d7cce10dfd670a5ae0614b1750c2e5f0ee6105a6fcbdf042dc1eff", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "9a541d7be4d7cce10dfd670a5ae0614b1750c2e5f0ee6105a6fcbdf042dc1eff", kill_on_drop: false }`
[INFO] [stdout] 9a541d7be4d7cce10dfd670a5ae0614b1750c2e5f0ee6105a6fcbdf042dc1eff
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:f3a9d4ad9d972b27faf3965f35b62e55ba32bbce8f20bc8fe909558a86702fde" "/opt/rustwide/cargo-home/bin/cargo" "+1.83.0" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 945a64129099fd2a543e76a6c47f1d42010de232f46053d0cef1717c9a1b2f3a
[INFO] running `Command { std: "docker" "start" "-a" "945a64129099fd2a543e76a6c47f1d42010de232f46053d0cef1717c9a1b2f3a", kill_on_drop: false }`
[INFO] [stderr] warning: unused variable: `min_count`
[INFO] [stderr]   --> src/main.rs:96:61
[INFO] [stderr]    |
[INFO] [stderr] 96 |     fn get_depth_coverage(&mut self, hist: &Histogram<u64>, min_count: &u64) {
[INFO] [stderr]    |                                                             ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_min_count`
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(unused_variables)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: `phcue-qc` (bin "phcue-qc" test) generated 1 warning
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.08s
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/phcue_qc-45577b07d76068d2)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "945a64129099fd2a543e76a6c47f1d42010de232f46053d0cef1717c9a1b2f3a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "945a64129099fd2a543e76a6c47f1d42010de232f46053d0cef1717c9a1b2f3a", kill_on_drop: false }`
[INFO] [stdout] 945a64129099fd2a543e76a6c47f1d42010de232f46053d0cef1717c9a1b2f3a
