[INFO] cloning repository https://github.com/fulcrumgenomics/guide-counter
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/fulcrumgenomics/guide-counter" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ffulcrumgenomics%2Fguide-counter", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ffulcrumgenomics%2Fguide-counter'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] e62ac05eb1c26233066d29940fed9ad50ee491d1
[INFO] testing fulcrumgenomics/guide-counter against 1.83.0 for beta-1.84.0-4-retry
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ffulcrumgenomics%2Fguide-counter" "/workspace/builds/worker-5-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc1/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/fulcrumgenomics/guide-counter on toolchain 1.83.0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.83.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/fulcrumgenomics/guide-counter
[INFO] finished tweaking git repo https://github.com/fulcrumgenomics/guide-counter
[INFO] tweaked toml for git repo https://github.com/fulcrumgenomics/guide-counter written to /workspace/builds/worker-5-tc1/source/Cargo.toml
[INFO] crate git repo https://github.com/fulcrumgenomics/guide-counter already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.83.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded mimalloc v0.1.27
[INFO] [stderr]   Downloaded fgoxide v0.1.3
[INFO] [stderr]   Downloaded clap_derive v3.0.0-rc.9
[INFO] [stderr]   Downloaded clap v3.0.0-rc.9
[INFO] [stderr]   Downloaded libmimalloc-sys v0.1.23
[INFO] [stderr]   Downloaded fastq v0.6.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:f3a9d4ad9d972b27faf3965f35b62e55ba32bbce8f20bc8fe909558a86702fde" "/opt/rustwide/cargo-home/bin/cargo" "+1.83.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] fd2ac1b9d1926a29783fed5fac244ad4b70c65718cab80731e054127a36d6f49
[INFO] running `Command { std: "docker" "start" "-a" "fd2ac1b9d1926a29783fed5fac244ad4b70c65718cab80731e054127a36d6f49", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "fd2ac1b9d1926a29783fed5fac244ad4b70c65718cab80731e054127a36d6f49", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "fd2ac1b9d1926a29783fed5fac244ad4b70c65718cab80731e054127a36d6f49", kill_on_drop: false }`
[INFO] [stdout] fd2ac1b9d1926a29783fed5fac244ad4b70c65718cab80731e054127a36d6f49
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:f3a9d4ad9d972b27faf3965f35b62e55ba32bbce8f20bc8fe909558a86702fde" "/opt/rustwide/cargo-home/bin/cargo" "+1.83.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 6a5d4cf3cbc5ace9c0339761023510a3111b0a5049de1c3bc0b202a370dfcf53
[INFO] running `Command { std: "docker" "start" "-a" "6a5d4cf3cbc5ace9c0339761023510a3111b0a5049de1c3bc0b202a370dfcf53", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.36
[INFO] [stderr]    Compiling unicode-xid v0.2.2
[INFO] [stderr]    Compiling cc v1.0.72
[INFO] [stderr]    Compiling syn v1.0.84
[INFO] [stderr]    Compiling memchr v2.4.1
[INFO] [stderr]    Compiling libc v0.2.112
[INFO] [stderr]    Compiling version_check v0.9.3
[INFO] [stderr]    Compiling autocfg v1.0.1
[INFO] [stderr]    Compiling cfg-if v1.0.0
[INFO] [stderr]    Compiling pkg-config v0.3.24
[INFO] [stderr]    Compiling serde_derive v1.0.132
[INFO] [stderr]    Compiling serde v1.0.132
[INFO] [stderr]    Compiling crc32fast v1.3.0
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling adler v1.0.2
[INFO] [stderr]    Compiling unicode-segmentation v1.8.0
[INFO] [stderr]    Compiling log v0.4.14
[INFO] [stderr]    Compiling regex-automata v0.1.10
[INFO] [stderr]    Compiling hashbrown v0.11.2
[INFO] [stderr]    Compiling itoa v0.4.8
[INFO] [stderr]    Compiling regex-syntax v0.6.25
[INFO] [stderr]    Compiling anyhow v1.0.52
[INFO] [stderr]    Compiling ryu v1.0.9
[INFO] [stderr]    Compiling termcolor v1.1.2
[INFO] [stderr]    Compiling heck v0.3.3
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling ahash v0.7.6
[INFO] [stderr]    Compiling quote v1.0.14
[INFO] [stderr]    Compiling miniz_oxide v0.4.4
[INFO] [stderr]    Compiling indexmap v1.7.0
[INFO] [stderr]    Compiling csv-core v0.1.10
[INFO] [stderr]    Compiling aho-corasick v0.7.18
[INFO] [stderr]    Compiling os_str_bytes v6.0.0
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling getrandom v0.2.3
[INFO] [stderr]    Compiling strsim v0.10.0
[INFO] [stderr]    Compiling once_cell v1.9.0
[INFO] [stderr]    Compiling textwrap v0.14.2
[INFO] [stderr]    Compiling humantime v2.1.0
[INFO] [stderr]    Compiling bitflags v1.3.2
[INFO] [stderr]    Compiling either v1.6.1
[INFO] [stderr]    Compiling itertools v0.10.3
[INFO] [stderr]    Compiling libz-sys v1.1.3
[INFO] [stderr]    Compiling lz4-sys v1.9.2
[INFO] [stderr]    Compiling libmimalloc-sys v0.1.23
[INFO] [stderr]    Compiling flate2 v1.0.22
[INFO] [stderr]    Compiling mimalloc v0.1.27
[INFO] [stderr]    Compiling regex v1.5.4
[INFO] [stderr]    Compiling thiserror-impl v1.0.30
[INFO] [stderr]    Compiling clap_derive v3.0.0-rc.9
[INFO] [stderr]    Compiling enum_dispatch v0.3.7
[INFO] [stderr]    Compiling env_logger v0.8.4
[INFO] [stderr]    Compiling thiserror v1.0.30
[INFO] [stderr]    Compiling clap v3.0.0-rc.9
[INFO] [stderr]    Compiling bstr v0.2.17
[INFO] [stderr]    Compiling csv v1.1.6
[INFO] [stderr]    Compiling fgoxide v0.1.3
[INFO] [stderr]    Compiling lz4 v1.23.2
[INFO] [stderr]    Compiling fastq v0.6.0
[INFO] [stderr]    Compiling guide-counter v0.1.3 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 40.02s
[INFO] running `Command { std: "docker" "inspect" "6a5d4cf3cbc5ace9c0339761023510a3111b0a5049de1c3bc0b202a370dfcf53", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "6a5d4cf3cbc5ace9c0339761023510a3111b0a5049de1c3bc0b202a370dfcf53", kill_on_drop: false }`
[INFO] [stdout] 6a5d4cf3cbc5ace9c0339761023510a3111b0a5049de1c3bc0b202a370dfcf53
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:f3a9d4ad9d972b27faf3965f35b62e55ba32bbce8f20bc8fe909558a86702fde" "/opt/rustwide/cargo-home/bin/cargo" "+1.83.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 4130f53ee53a6043a947056e68c50a83b7bc82e481eae269102f7119215a3dec
[INFO] running `Command { std: "docker" "start" "-a" "4130f53ee53a6043a947056e68c50a83b7bc82e481eae269102f7119215a3dec", kill_on_drop: false }`
[INFO] [stderr]    Compiling ppv-lite86 v0.2.15
[INFO] [stderr]    Compiling getrandom v0.2.3
[INFO] [stderr]    Compiling remove_dir_all v0.5.3
[INFO] [stderr]    Compiling rand_core v0.6.3
[INFO] [stderr]    Compiling ahash v0.7.6
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling rand v0.8.4
[INFO] [stderr]    Compiling tempfile v3.2.0
[INFO] [stderr]    Compiling guide-counter v0.1.3 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 6.28s
[INFO] running `Command { std: "docker" "inspect" "4130f53ee53a6043a947056e68c50a83b7bc82e481eae269102f7119215a3dec", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4130f53ee53a6043a947056e68c50a83b7bc82e481eae269102f7119215a3dec", kill_on_drop: false }`
[INFO] [stdout] 4130f53ee53a6043a947056e68c50a83b7bc82e481eae269102f7119215a3dec
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:f3a9d4ad9d972b27faf3965f35b62e55ba32bbce8f20bc8fe909558a86702fde" "/opt/rustwide/cargo-home/bin/cargo" "+1.83.0" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] cdba67f501ea330b52fc6279a103ff0c44e19c6a90034669ea95202ec8b17ab0
[INFO] running `Command { std: "docker" "start" "-a" "cdba67f501ea330b52fc6279a103ff0c44e19c6a90034669ea95202ec8b17ab0", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.07s
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/guide_counter-35e26eb4a3b8493b)
[INFO] [stdout] 
[INFO] [stdout] running 19 tests
[INFO] [stdout] test commands::count::tests::test_determine_prefixes_finds_offset_zero ... ok
[INFO] [stdout] test commands::count::tests::test_count_reads_handles_empty_fastq ... ok
[INFO] [stdout] test commands::count::tests::test_build_lookup ... ok
[INFO] [stdout] test commands::count::tests::test_determine_prefixes_finds_last_offset ... ok
[INFO] [stdout] test commands::count::tests::test_sample_name ... ok
[INFO] [stdout] test commands::count::tests::test_determine_prefixes_actually_subsamples ... ok
[INFO] [stdout] test guide::tests::test_guide_library_positive ... ok
[INFO] [stdout] test guide::tests::test_guide_uppercases_sequence ... ok
[INFO] [stdout] test guide::tests::test_is_all_acgt ... ok
[INFO] [stdout] test guide::tests::test_reading_guide_library_from_tsv_file ... ok
[INFO] [stdout] test guide::tests::test_guide_library_rejects_invalid_sequences ... ok
[INFO] [stdout] test guide::tests::test_guide_library_rejects_duplicate_sequences ... ok
[INFO] [stdout] test commands::count::tests::test_determine_prefixes_min_fraction ... ok
[INFO] [stdout] test guide::tests::test_load_guide_library_from_files ... ok
[INFO] [stdout] test commands::count::tests::test_count_reads ... ok
[INFO] [stdout] test commands::count::tests::test_reads_shorter_than_guides_ok ... ok
[INFO] [stdout] test guide::tests::test_reading_guide_library_from_csv_file ... ok
[INFO] [stdout] test guide::tests::test_guide_library_rejects_mixed_length ... ok
[INFO] [stdout] test commands::count::tests::test_end_to_end ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 19 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.10s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "cdba67f501ea330b52fc6279a103ff0c44e19c6a90034669ea95202ec8b17ab0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "cdba67f501ea330b52fc6279a103ff0c44e19c6a90034669ea95202ec8b17ab0", kill_on_drop: false }`
[INFO] [stdout] cdba67f501ea330b52fc6279a103ff0c44e19c6a90034669ea95202ec8b17ab0
