[INFO] fetching crate tskit 0.15.0-alpha.0...
[INFO] testing tskit-0.15.0-alpha.0 against beta-2024-12-08 for beta-1.84.0-4-retry
[INFO] extracting crate tskit 0.15.0-alpha.0 into /workspace/builds/worker-0-tc2/source
[INFO] validating manifest of crates.io crate tskit 0.15.0-alpha.0 on toolchain beta-2024-12-08
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2024-12-08" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate tskit 0.15.0-alpha.0
[INFO] removed 0 missing examples
[INFO] finished tweaking crates.io crate tskit 0.15.0-alpha.0
[INFO] tweaked toml for crates.io crate tskit 0.15.0-alpha.0 written to /workspace/builds/worker-0-tc2/source/Cargo.toml
[INFO] crate crates.io crate tskit 0.15.0-alpha.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2024-12-08" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:f3a9d4ad9d972b27faf3965f35b62e55ba32bbce8f20bc8fe909558a86702fde" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2024-12-08" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 3e6a4f61fd19b4f977593f3ea1ec58f25dc98c21abfe6d38fd7342b0989f6f15
[INFO] running `Command { std: "docker" "start" "-a" "3e6a4f61fd19b4f977593f3ea1ec58f25dc98c21abfe6d38fd7342b0989f6f15", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "3e6a4f61fd19b4f977593f3ea1ec58f25dc98c21abfe6d38fd7342b0989f6f15", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "3e6a4f61fd19b4f977593f3ea1ec58f25dc98c21abfe6d38fd7342b0989f6f15", kill_on_drop: false }`
[INFO] [stdout] 3e6a4f61fd19b4f977593f3ea1ec58f25dc98c21abfe6d38fd7342b0989f6f15
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:f3a9d4ad9d972b27faf3965f35b62e55ba32bbce8f20bc8fe909558a86702fde" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2024-12-08" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] e1bcf154dce83ae8875c5240dd7c84cb5b76f3b5fde500add1bd9f6a5fb95d1e
[INFO] running `Command { std: "docker" "start" "-a" "e1bcf154dce83ae8875c5240dd7c84cb5b76f3b5fde500add1bd9f6a5fb95d1e", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.79
[INFO] [stderr]    Compiling unicode-ident v1.0.12
[INFO] [stderr]    Compiling libc v0.2.154
[INFO] [stderr]    Compiling glob v0.3.1
[INFO] [stderr]    Compiling prettyplease v0.2.17
[INFO] [stderr]    Compiling rustix v0.38.32
[INFO] [stderr]    Compiling cfg-if v1.0.0
[INFO] [stderr]    Compiling minimal-lexical v0.2.1
[INFO] [stderr]    Compiling linux-raw-sys v0.4.13
[INFO] [stderr]    Compiling regex-syntax v0.8.3
[INFO] [stderr]    Compiling bitflags v2.5.0
[INFO] [stderr]    Compiling memchr v2.7.2
[INFO] [stderr]    Compiling either v1.10.0
[INFO] [stderr]    Compiling libloading v0.8.3
[INFO] [stderr]    Compiling clang-sys v1.7.0
[INFO] [stderr]    Compiling bindgen v0.69.4
[INFO] [stderr]    Compiling home v0.5.9
[INFO] [stderr]    Compiling itertools v0.12.1
[INFO] [stderr]    Compiling quote v1.0.35
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]    Compiling syn v2.0.57
[INFO] [stderr]    Compiling jobserver v0.1.31
[INFO] [stderr]    Compiling log v0.4.21
[INFO] [stderr]    Compiling once_cell v1.19.0
[INFO] [stderr]    Compiling shlex v1.3.0
[INFO] [stderr]    Compiling rustc-hash v1.1.0
[INFO] [stderr]    Compiling lazycell v1.3.0
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling regex-automata v0.4.6
[INFO] [stderr]    Compiling cc v1.0.96
[INFO] [stderr]    Compiling thiserror v1.0.58
[INFO] [stderr]    Compiling pkg-config v0.3.30
[INFO] [stderr]    Compiling which v4.4.2
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]    Compiling streaming-iterator v0.1.9
[INFO] [stderr]    Compiling regex v1.10.4
[INFO] [stderr]    Compiling thiserror-impl v1.0.58
[INFO] [stderr]    Compiling delegate v0.12.0
[INFO] [stderr]    Compiling tskit v0.15.0-alpha.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unexpected `cfg` condition name: `doc_cfg`
[INFO] [stdout]   --> src/lib.rs:75:13
[INFO] [stdout]    |
[INFO] [stdout] 75 | #![cfg_attr(doc_cfg, feature(doc_cfg))]
[INFO] [stdout]    |             ^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = help: expected names are: `clippy`, `debug_assertions`, `doc`, `docsrs`, `doctest`, `feature`, `fmt_debug`, `miri`, `overflow_checks`, `panic`, `proc_macro`, `relocation_model`, `rustfmt`, `sanitize`, `sanitizer_cfi_generalize_pointers`, `sanitizer_cfi_normalize_integers`, `target_abi`, `target_arch`, `target_endian`, `target_env`, `target_family`, `target_feature`, `target_has_atomic`, `target_has_atomic_equal_alignment`, `target_has_atomic_load_store`, `target_os`, `target_pointer_width`, `target_thread_local`, `target_vendor`, `test`, `ub_checks`, `unix`, and `windows`
[INFO] [stdout]    = help: consider using a Cargo feature instead
[INFO] [stdout]    = help: or consider adding in `Cargo.toml` the `check-cfg` lint config for the lint:
[INFO] [stdout]             [lints.rust]
[INFO] [stdout]             unexpected_cfgs = { level = "warn", check-cfg = ['cfg(doc_cfg)'] }
[INFO] [stdout]    = help: or consider adding `println!("cargo::rustc-check-cfg=cfg(doc_cfg)");` to the top of the `build.rs`
[INFO] [stdout]    = note: see <https://doc.rust-lang.org/nightly/rustc/check-cfg/cargo-specifics.html> for more information about checking conditional configuration
[INFO] [stdout]    = note: `#[warn(unexpected_cfgs)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 54.27s
[INFO] running `Command { std: "docker" "inspect" "e1bcf154dce83ae8875c5240dd7c84cb5b76f3b5fde500add1bd9f6a5fb95d1e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e1bcf154dce83ae8875c5240dd7c84cb5b76f3b5fde500add1bd9f6a5fb95d1e", kill_on_drop: false }`
[INFO] [stdout] e1bcf154dce83ae8875c5240dd7c84cb5b76f3b5fde500add1bd9f6a5fb95d1e
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:f3a9d4ad9d972b27faf3965f35b62e55ba32bbce8f20bc8fe909558a86702fde" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2024-12-08" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] c276ed9af42ae198c0627135494d88ca19247c563a0a3d8d773261f3a9f9d4e3
[INFO] running `Command { std: "docker" "start" "-a" "c276ed9af42ae198c0627135494d88ca19247c563a0a3d8d773261f3a9f9d4e3", kill_on_drop: false }`
[INFO] [stderr]    Compiling cfg-if v1.0.0
[INFO] [stderr]    Compiling autocfg v1.2.0
[INFO] [stderr]    Compiling libm v0.2.8
[INFO] [stderr]    Compiling serde v1.0.199
[INFO] [stderr]    Compiling serde_derive v1.0.199
[INFO] [stderr]    Compiling utf8parse v0.2.1
[INFO] [stderr]    Compiling anstyle v1.0.6
[INFO] [stderr]    Compiling anstyle-query v1.0.2
[INFO] [stderr]    Compiling libloading v0.8.3
[INFO] [stderr]    Compiling getrandom v0.2.12
[INFO] [stderr]    Compiling anstyle-parse v0.2.3
[INFO] [stderr]    Compiling clang-sys v1.7.0
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling ppv-lite86 v0.2.17
[INFO] [stderr]    Compiling colorchoice v1.0.0
[INFO] [stderr]    Compiling anstream v0.6.13
[INFO] [stderr]    Compiling strsim v0.11.0
[INFO] [stderr]    Compiling num-traits v0.2.18
[INFO] [stderr]    Compiling num-bigint v0.4.4
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling anyhow v1.0.81
[INFO] [stderr]    Compiling serde_json v1.0.115
[INFO] [stderr]    Compiling clap_lex v0.7.0
[INFO] [stderr]    Compiling heck v0.5.0
[INFO] [stderr]    Compiling clap_derive v4.5.4
[INFO] [stderr]    Compiling clap_builder v4.5.2
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling byteorder v1.5.0
[INFO] [stderr]    Compiling itoa v1.0.11
[INFO] [stderr]    Compiling ryu v1.0.17
[INFO] [stderr]    Compiling iter-read v0.3.1
[INFO] [stderr]    Compiling humantime v2.1.0
[INFO] [stderr]    Compiling num-integer v0.1.46
[INFO] [stderr]    Compiling rand_distr v0.4.3
[INFO] [stderr]    Compiling bindgen v0.69.4
[INFO] [stderr]    Compiling clap v4.5.4
[INFO] [stderr]    Compiling bincode v1.3.3
[INFO] [stderr]    Compiling serde-pickle v1.1.1
[INFO] [stderr]    Compiling tskit v0.15.0-alpha.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unexpected `cfg` condition name: `doc_cfg`
[INFO] [stdout]   --> src/lib.rs:75:13
[INFO] [stdout]    |
[INFO] [stdout] 75 | #![cfg_attr(doc_cfg, feature(doc_cfg))]
[INFO] [stdout]    |             ^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = help: expected names are: `clippy`, `debug_assertions`, `doc`, `docsrs`, `doctest`, `feature`, `fmt_debug`, `miri`, `overflow_checks`, `panic`, `proc_macro`, `relocation_model`, `rustfmt`, `sanitize`, `sanitizer_cfi_generalize_pointers`, `sanitizer_cfi_normalize_integers`, `target_abi`, `target_arch`, `target_endian`, `target_env`, `target_family`, `target_feature`, `target_has_atomic`, `target_has_atomic_equal_alignment`, `target_has_atomic_load_store`, `target_os`, `target_pointer_width`, `target_thread_local`, `target_vendor`, `test`, `ub_checks`, `unix`, and `windows`
[INFO] [stdout]    = help: consider using a Cargo feature instead
[INFO] [stdout]    = help: or consider adding in `Cargo.toml` the `check-cfg` lint config for the lint:
[INFO] [stdout]             [lints.rust]
[INFO] [stdout]             unexpected_cfgs = { level = "warn", check-cfg = ['cfg(doc_cfg)'] }
[INFO] [stdout]    = help: or consider adding `println!("cargo::rustc-check-cfg=cfg(doc_cfg)");` to the top of the `build.rs`
[INFO] [stdout]    = note: see <https://doc.rust-lang.org/nightly/rustc/check-cfg/cargo-specifics.html> for more information about checking conditional configuration
[INFO] [stdout]    = note: `#[warn(unexpected_cfgs)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unexpected `cfg` condition name: `doc_cfg`
[INFO] [stdout]   --> src/lib.rs:75:13
[INFO] [stdout]    |
[INFO] [stdout] 75 | #![cfg_attr(doc_cfg, feature(doc_cfg))]
[INFO] [stdout]    |             ^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = help: expected names are: `clippy`, `debug_assertions`, `doc`, `docsrs`, `doctest`, `feature`, `fmt_debug`, `miri`, `overflow_checks`, `panic`, `proc_macro`, `relocation_model`, `rustfmt`, `sanitize`, `sanitizer_cfi_generalize_pointers`, `sanitizer_cfi_normalize_integers`, `target_abi`, `target_arch`, `target_endian`, `target_env`, `target_family`, `target_feature`, `target_has_atomic`, `target_has_atomic_equal_alignment`, `target_has_atomic_load_store`, `target_os`, `target_pointer_width`, `target_thread_local`, `target_vendor`, `test`, `ub_checks`, `unix`, and `windows`
[INFO] [stdout]    = help: consider using a Cargo feature instead
[INFO] [stdout]    = help: or consider adding in `Cargo.toml` the `check-cfg` lint config for the lint:
[INFO] [stdout]             [lints.rust]
[INFO] [stdout]             unexpected_cfgs = { level = "warn", check-cfg = ['cfg(doc_cfg)'] }
[INFO] [stdout]    = help: or consider adding `println!("cargo::rustc-check-cfg=cfg(doc_cfg)");` to the top of the `build.rs`
[INFO] [stdout]    = note: see <https://doc.rust-lang.org/nightly/rustc/check-cfg/cargo-specifics.html> for more information about checking conditional configuration
[INFO] [stdout]    = note: `#[warn(unexpected_cfgs)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 1m 06s
[INFO] running `Command { std: "docker" "inspect" "c276ed9af42ae198c0627135494d88ca19247c563a0a3d8d773261f3a9f9d4e3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c276ed9af42ae198c0627135494d88ca19247c563a0a3d8d773261f3a9f9d4e3", kill_on_drop: false }`
[INFO] [stdout] c276ed9af42ae198c0627135494d88ca19247c563a0a3d8d773261f3a9f9d4e3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:f3a9d4ad9d972b27faf3965f35b62e55ba32bbce8f20bc8fe909558a86702fde" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2024-12-08" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 0a807287201d73e209a739b5c589272202399a4f48a2f5662003f777a3d38a99
[INFO] running `Command { std: "docker" "start" "-a" "0a807287201d73e209a739b5c589272202399a4f48a2f5662003f777a3d38a99", kill_on_drop: false }`
[INFO] [stderr] warning: unexpected `cfg` condition name: `doc_cfg`
[INFO] [stderr]   --> src/lib.rs:75:13
[INFO] [stderr]    |
[INFO] [stderr] 75 | #![cfg_attr(doc_cfg, feature(doc_cfg))]
[INFO] [stderr]    |             ^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = help: expected names are: `clippy`, `debug_assertions`, `doc`, `docsrs`, `doctest`, `feature`, `fmt_debug`, `miri`, `overflow_checks`, `panic`, `proc_macro`, `relocation_model`, `rustfmt`, `sanitize`, `sanitizer_cfi_generalize_pointers`, `sanitizer_cfi_normalize_integers`, `target_abi`, `target_arch`, `target_endian`, `target_env`, `target_family`, `target_feature`, `target_has_atomic`, `target_has_atomic_equal_alignment`, `target_has_atomic_load_store`, `target_os`, `target_pointer_width`, `target_thread_local`, `target_vendor`, `test`, `ub_checks`, `unix`, and `windows`
[INFO] [stderr]    = help: consider using a Cargo feature instead
[INFO] [stderr]    = help: or consider adding in `Cargo.toml` the `check-cfg` lint config for the lint:
[INFO] [stderr]             [lints.rust]
[INFO] [stderr]             unexpected_cfgs = { level = "warn", check-cfg = ['cfg(doc_cfg)'] }
[INFO] [stderr]    = help: or consider adding `println!("cargo::rustc-check-cfg=cfg(doc_cfg)");` to the top of the `build.rs`
[INFO] [stderr]    = note: see <https://doc.rust-lang.org/nightly/rustc/check-cfg/cargo-specifics.html> for more information about checking conditional configuration
[INFO] [stderr]    = note: `#[warn(unexpected_cfgs)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: `tskit` (lib) generated 1 warning
[INFO] [stderr] warning: `tskit` (lib test) generated 1 warning (1 duplicate)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.12s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/tskit-0de10041f8c7e27a)
[INFO] [stdout] running 77 tests
[INFO] [stdout] test error::test::test_anyhow_compatability ... ok
[INFO] [stdout] test error::test::test_get_tskit_error_message ... ok
[INFO] [stdout] test metadata::test_serde::test_metadata_round_trip_wrong_type ... ok
[INFO] [stdout] test metadata::tests::test_encoded_metadata_roundtrip ... ok
[INFO] [stdout] test metadata::tests::test_metadata_round_trip ... ok
[INFO] [stdout] test metadata::tests::test_vec8_cast_to_c_string ... ok
[INFO] [stdout] test sys::bindings::bindgen_test_layout__IO_FILE ... ok
[INFO] [stdout] test sys::bindings::bindgen_test_layout__tsk_avl_node_int_t ... ok
[INFO] [stdout] test sys::bindings::bindgen_test_layout__tsk_edge_list_node_t ... ok
[INFO] [stdout] test sys::bindings::bindgen_test_layout__tsk_identity_segment_t ... ok
[INFO] [stdout] test sys::bindings::bindgen_test_layout__tsk_ls_hmm_t ... ok
[INFO] [stdout] test sys::bindings::bindgen_test_layout__tsk_table_sorter_t ... ok
[INFO] [stdout] test sys::bindings::bindgen_test_layout_kaitem_t ... ok
[INFO] [stdout] test sys::bindings::bindgen_test_layout_kastore_t ... ok
[INFO] [stdout] test sys::bindings::bindgen_test_layout_tsk_argsort_t ... ok
[INFO] [stdout] test sys::bindings::bindgen_test_layout_tsk_avl_tree_int_t ... ok
[INFO] [stdout] test sys::bindings::bindgen_test_layout_tsk_blkalloc_t ... ok
[INFO] [stdout] test sys::bindings::bindgen_test_layout_tsk_bookmark_t ... ok
[INFO] [stdout] test sys::bindings::bindgen_test_layout_tsk_compressed_matrix_t ... ok
[INFO] [stdout] test sys::bindings::bindgen_test_layout_tsk_diff_iter_t ... ok
[INFO] [stdout] test sys::bindings::bindgen_test_layout_tsk_edge_list_t ... ok
[INFO] [stdout] test sys::bindings::bindgen_test_layout_tsk_edge_t ... ok
[INFO] [stdout] test sys::bindings::bindgen_test_layout_tsk_edge_table_t ... ok
[INFO] [stdout] test sys::bindings::bindgen_test_layout_tsk_identity_segment_list_t ... ok
[INFO] [stdout] test sys::bindings::bindgen_test_layout_tsk_identity_segments_t ... ok
[INFO] [stdout] test sys::bindings::bindgen_test_layout_tsk_individual_t ... ok
[INFO] [stdout] test _macros::test::test_handle_return_value_test_panic ... ok
[INFO] [stdout] test error::test::test_error_formatting ... ok
[INFO] [stdout] test metadata::test_serde::test_encoded_metadata_roundtrip ... ok
[INFO] [stdout] test sys::bindings::bindgen_test_layout_tsk_individual_table_t ... ok
[INFO] [stdout] test metadata::test_serde::test_metadata_round_trip ... ok
[INFO] [stdout] test _macros::test::test_handle_good_return_value ... ok
[INFO] [stdout] test error::test::test_extract_error_message ... ok
[INFO] [stdout] test sys::bindings::bindgen_test_layout_tsk_ld_calc_t ... ok
[INFO] [stdout] test sys::bindings::bindgen_test_layout_tsk_node_t ... ok
[INFO] [stdout] test sys::bindings::bindgen_test_layout_tsk_migration_t ... ok
[INFO] [stdout] test sys::bindings::bindgen_test_layout_tsk_mutation_table_t ... ok
[INFO] [stdout] test sys::bindings::bindgen_test_layout_tsk_node_table_t ... ok
[INFO] [stdout] test sys::bindings::bindgen_test_layout_tsk_population_t ... ok
[INFO] [stdout] test sys::bindings::bindgen_test_layout_tsk_population_table_t ... ok
[INFO] [stdout] test sys::bindings::bindgen_test_layout_tsk_migration_table_t ... ok
[INFO] [stdout] test sys::bindings::bindgen_test_layout_tsk_mutation_t ... ok
[INFO] [stdout] test sys::bindings::bindgen_test_layout_tsk_provenance_t ... ok
[INFO] [stdout] test sys::bindings::bindgen_test_layout_tsk_provenance_table_t ... ok
[INFO] [stdout] test sys::bindings::bindgen_test_layout_tsk_recomb_required_record ... ok
[INFO] [stdout] test sys::bindings::bindgen_test_layout_tsk_reference_sequence_t ... ok
[INFO] [stdout] test sys::bindings::bindgen_test_layout_tsk_site_probability_t ... ok
[INFO] [stdout] test sys::bindings::bindgen_test_layout_tsk_site_table_t ... ok
[INFO] [stdout] test sys::bindings::bindgen_test_layout_tsk_site_t ... ok
[INFO] [stdout] test sys::bindings::bindgen_test_layout_tsk_state_transition_t ... ok
[INFO] [stdout] test sys::bindings::bindgen_test_layout_tsk_table_collection_t ... ok
[INFO] [stdout] test sys::bindings::bindgen_test_layout_tsk_table_collection_t__bindgen_ty_1 ... ok
[INFO] [stdout] test sys::bindings::bindgen_test_layout_tsk_treeseq_t ... ok
[INFO] [stdout] test sys::bindings::bindgen_test_layout_tsk_transition_stack_t ... ok
[INFO] [stdout] test sys::bindings::bindgen_test_layout_tsk_tree_t__bindgen_ty_1 ... ok
[INFO] [stdout] test sys::bindings::bindgen_test_layout_tsk_tree_t ... ok
[INFO] [stdout] test sys::bindings::bindgen_test_layout_tsk_variant_t ... ok
[INFO] [stdout] test sys::bindings::bindgen_test_layout_tsk_vargen_t ... ok
[INFO] [stdout] test sys::bindings::bindgen_test_layout_tsk_value_transition_t ... ok
[INFO] [stdout] test sys::bindings::bindgen_test_layout_tsk_viterbi_matrix_t ... ok
[INFO] [stdout] test sys::newtypes::test_f64_newtype_Display ... ok
[INFO] [stdout] test sys::newtypes::test_usize_to_size_type ... ok
[INFO] [stdout] test sys::test_error_message ... ok
[INFO] [stdout] test sys::tskbox::test_into_raw_miri ... ok
[INFO] [stdout] test sys::tskbox::test_miri ... ok
[INFO] [stdout] test sys::tskbox::test_miri_uninit ... ok
[INFO] [stdout] test sys::tskbox::test_table_collection_tskbox ... ok
[INFO] [stdout] test sys::tskbox::test_table_collection_tskbox_shared_ptr ... ok
[INFO] [stdout] test tests::test_c_api_version ... ok
[INFO] [stdout] test types::test::test_bookmark_mutability ... ok
[INFO] [stdout] test sys::flags::tests::node_is_not_sample ... ok
[INFO] [stdout] test sys::flags::tests::node_is_sample ... ok
[INFO] [stdout] test sys::test_error_code ... ok
[INFO] [stdout] test sys::tskbox::test_table_collection_tskbox_uninit ... ok
[INFO] [stdout] test sys::flags::tests::default_looks_like_zero ... ok
[INFO] [stdout] test table_views::table_views_tests::test_treeseq ... ok
[INFO] [stdout] test _macros::test::test_tskit_panic - should panic ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 77 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.11s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/book_metadata.rs (/opt/rustwide/target/debug/deps/book_metadata-40efa0780fa50393)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stderr]      Running tests/book_table_collection.rs (/opt/rustwide/target/debug/deps/book_table_collection-c3510bf7983eb48d)
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 8 tests
[INFO] [stdout] test add_node_without_metadata ... ok
[INFO] [stdout] test test_adding_node_table_row_with_defaults_and_metadata ... ok
[INFO] [stdout] test test_adding_node_table_row_with_defaults_and_metadata_requiring_clone ... ok
[INFO] [stdout] test add_node_handle_error ... ok
[INFO] [stdout] test simple_table_collection_creation ... ok
[INFO] [stdout] test get_data_from_edge_table ... ok
[INFO] [stdout] test test_adding_node_table_row_with_defaults ... ok
[INFO] [stdout] test simple_table_collection_creation_with_newtype ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 8 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/book_trees.rs (/opt/rustwide/target/debug/deps/book_trees-9867c662ba4f1c8b)
[INFO] [stdout] 
[INFO] [stdout] running 1 test
[INFO] [stdout] test initialize_from_table_collection ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/example_flags.rs (/opt/rustwide/target/debug/deps/example_flags-5e0507246bef8daf)
[INFO] [stdout] 
[INFO] [stderr]      Running tests/experimental.rs (/opt/rustwide/target/debug/deps/experimental-4c56499ecec28425)
[INFO] [stdout] running 2 tests
[INFO] [stdout] test test_clip_invalid_flags ... ok
[INFO] [stdout] test test_example_node_flags ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 2 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/test_id_types.rs (/opt/rustwide/target/debug/deps/test_id_types-c99f2f005ad4e3b3)
[INFO] [stdout] 
[INFO] [stdout] running 1 test
[INFO] [stdout] test test_node_id_as_usize ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/test_metadata.rs (/opt/rustwide/target/debug/deps/test_metadata-5bdccae7f830e550)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/test_tables.rs (/opt/rustwide/target/debug/deps/test_tables-f94f8648c48722a8)
[INFO] [stdout] 
[INFO] [stdout] running 8 tests
[INFO] [stdout] test test_adding_rows_without_metadata::test_adding_individual ... ok
[INFO] [stderr]      Running tests/test_trees.rs (/opt/rustwide/target/debug/deps/test_trees-d3433b77e3fa3b10)
[INFO] [stdout] test test_adding_rows_without_metadata::test_adding_edge ... ok
[INFO] [stdout] test test_adding_rows_without_metadata::test_adding_mutation ... ok
[INFO] [stdout] test test_adding_rows_without_metadata::test_adding_migration ... ok
[INFO] [stdout] test test_adding_rows_without_metadata::test_adding_population ... ok
[INFO] [stdout] test test_adding_rows_without_metadata::test_adding_site ... ok
[INFO] [stdout] test test_empty_table_collection ... ok
[INFO] [stdout] test test_adding_rows_without_metadata::test_adding_node ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 8 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 18 tests
[INFO] [stdout] test test_iterate_no_roots ... ok
[INFO] [stdout] test test_kc_distance_naive_test ... ok
[INFO] [stdout] test test_num_tracked_samples ... ok
[INFO] [stdout] test test_dump_tables ... ok
[INFO] [stdout] test test_iterate_samples ... ok
[INFO] [stdout] test test_iterate_tree_seq_with_one_tree ... ok
[INFO] [stdout] test build_arc ... ok
[INFO] [stdout] test test_create_treeseq_new_from_tables ... ok
[INFO] [stdout] test test_create_treeseq_from_tables ... ok
[INFO] [stdout] test test_samples_iterator_error_when_not_tracking_samples ... ok
[INFO] [stdout] test test_reverse_tree_iteration ... ok
[INFO] [stdout] test test_simplify_treeseq ... ok
[INFO] [stdout] test test_tree_iteration_at_invalid_position ... ok
[INFO] [stdout] test test_simplify_tables ... ok
[INFO] [stdout] test test_tree_iteration_at_invalid_index ... ok
[INFO] [stdout] test test_tree_iteration_at_position ... ok
[INFO] [stdout] test test_tree_iteration_at_index ... ok
[INFO] [stdout] test test_num_tracked_samples_not_tracking_sample_counts - should panic ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 18 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.07s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests tskit
[INFO] [stderr] warning: expected `=`, found `}`
[INFO] [stderr]   --> src/table_collection.rs:72:5
[INFO] [stderr]    |
[INFO] [stderr] 72 | /     /// Create a new table collection with a sequence length.
[INFO] [stderr] 73 | |     ///
[INFO] [stderr] 74 | |     /// # Examples
[INFO] [stderr] 75 | |     ///
[INFO] [stderr] ...  |
[INFO] [stderr] 83 | |     /// let tables = tskit::TableCollection::new(-55.0).unwrap();
[INFO] [stderr] 84 | |     /// ```
[INFO] [stderr]    | |___________^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(rustdoc::invalid_codeblock_attributes)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: expected `=`, found `}`
[INFO] [stderr]    --> src/trees/treeseq.rs:183:5
[INFO] [stderr]     |
[INFO] [stderr] 183 | /     /// Create an iterator over trees.
[INFO] [stderr] 184 | |     ///
[INFO] [stderr] 185 | |     /// # Parameters
[INFO] [stderr] 186 | |     ///
[INFO] [stderr] ...   |
[INFO] [stderr] 236 | |     /// }
[INFO] [stderr] 237 | |     /// ```
[INFO] [stderr]     | |___________^
[INFO] [stderr] 
[INFO] [stderr] warning: 2 warnings emitted
[INFO] [stderr] 
[INFO] [stdout] 
[INFO] [stdout] running 147 tests
[INFO] [stdout] test src/edge_table.rs - edge_table::EdgeTable (line 161) ... ok
[INFO] [stdout] test src/error.rs - error::panic_on_tskit_error (line 24) ... ok
[INFO] [stdout] test src/error.rs - error::get_tskit_error_message (line 36) ... ok
[INFO] [stdout] test src/error.rs - error::panic_on_tskit_error (line 15) ... ok
[INFO] [stdout] test src/error.rs - error::get_tskit_error_message (line 52) ... ok
[INFO] [stdout] test src/individual_table.rs - individual_table::IndividualTable (line 103) ... ok
[INFO] [stdout] test src/error.rs - error::get_tskit_error_message (line 45) ... ok
[INFO] [stdout] test src/edge_table.rs - edge_table::EdgeTable (line 146) ... ok
[INFO] [stdout] test src/individual_table.rs - individual_table::IndividualTable (line 116) ... ok
[INFO] [stdout] test src/individual_table.rs - individual_table::IndividualTable::metadata (line 303) ... ok
[INFO] [stdout] test src/individual_table.rs - individual_table::IndividualTable::metadata (line 268) ... ok
[INFO] [stdout] test src/individual_table.rs - individual_table::IndividualTable::metadata (line 330) ... ok
[INFO] [stdout] test src/individual_table.rs - individual_table::IndividualTable::metadata (line 280) ... ok
[INFO] [stdout] test src/lib.rs - (line 35) ... ok
[INFO] [stdout] test src/individual_table.rs - individual_table::IndividualTable::metadata (line 361) ... ok
[INFO] [stdout] test src/individual_table.rs - individual_table::IndividualTable::metadata (line 349) ... ok
[INFO] [stdout] test src/migration_table.rs - migration_table::MigrationTable (line 178) ... ok
[INFO] [stdout] test src/metadata.rs - metadata (line 76) ... ok
[INFO] [stdout] test src/metadata.rs - metadata (line 30) ... ok
[INFO] [stdout] test src/newtypes.rs - newtypes::NodeId (line 74) ... ok
[INFO] [stdout] test src/mutation_table.rs - mutation_table::MutationTable (line 175) ... ok
[INFO] [stdout] test src/newtypes.rs - newtypes::SizeType (line 117) ... ok
[INFO] [stdout] test src/newtypes.rs - newtypes::NodeId (line 37) ... ok
[INFO] [stdout] test src/mutation_table.rs - mutation_table::MutationTable (line 163) ... ok
[INFO] [stdout] test src/migration_table.rs - migration_table::MigrationTable (line 166) ... ok
[INFO] [stdout] test src/newtypes.rs - newtypes::NodeId (line 59) ... ok
[INFO] [stdout] test src/node_table.rs - node_table::NodeDefaultsWithMetadataNotCloneNotDebug (line 278) - compile fail ... ok
[INFO] [stdout] test src/metadata.rs - metadata (line 103) ... ok
[INFO] [stdout] test src/node_table.rs - node_table::NodeDefaultsWithMetadataNotCloneNotDebug (line 314) - compile fail ... ok
[INFO] [stdout] test src/newtypes.rs - newtypes::Time (line 164) ... ok
[INFO] [stdout] test src/node_table.rs - node_table::NodeDefaults (line 147) ... ok
[INFO] [stdout] test src/node_table.rs - node_table::NodeDefaults (line 157) ... ok
[INFO] [stdout] test src/node_table.rs - node_table::NodeTable::flags (line 495) ... ok
[INFO] [stdout] test src/node_table.rs - node_table::NodeTable::flags_slice_mut (line 739) ... ok
[INFO] [stdout] test src/node_table.rs - node_table::NodeTable (line 389) ... ok
[INFO] [stdout] test src/node_table.rs - node_table::NodeTable (line 401) ... ok
[INFO] [stdout] test src/node_table.rs - node_table::NodeTable::flags_slice_mut (line 777) ... ok
[INFO] [stdout] test src/node_table.rs - node_table::NodeTable::add_row_with_defaults (line 862) ... ok
[INFO] [stdout] test src/node_table.rs - node_table::NodeTable::time_slice_mut (line 687) - compile fail ... ok
[INFO] [stdout] test src/node_table.rs - node_table::NodeTable::flags_slice_mut (line 764) ... ok
[INFO] [stdout] test src/node_table.rs - node_table::NodeTable::flags_slice_mut (line 753) ... ok
[INFO] [stdout] test src/node_table.rs - node_table::NodeTable::individual (line 562) ... ok
[INFO] [stdout] test src/node_table.rs - node_table::NodeTable::flags_slice_mut (line 728) ... ok
[INFO] [stdout] test src/node_table.rs - node_table::NodeTable::population (line 519) ... ok
[INFO] [stdout] test src/site_table.rs - site_table::SiteTable (line 144) ... ok
[INFO] [stdout] test src/sys/bindings.rs - sys::bindings (line 12) ... ok
[INFO] [stdout] test src/site_table.rs - site_table::SiteTable (line 132) ... ok
[INFO] [stdout] test src/node_table.rs - node_table::NodeTable::time (line 470) ... ok
[INFO] [stdout] test src/population_table.rs - population_table::PopulationTable (line 113) ... ok
[INFO] [stdout] test src/sys/flags.rs - sys::flags::IndividualTableSortOptions (line 376) ... ok
[INFO] [stdout] test src/population_table.rs - population_table::PopulationTable (line 125) ... ok
[INFO] [stdout] test src/sys/flags.rs - sys::flags::SimplificationOptions (line 57) ... ok
[INFO] [stdout] test src/node_table.rs - node_table::NodeTable::time_slice_mut (line 697) ... ok
[INFO] [stdout] test src/sys/flags.rs - sys::flags::NodeFlags (line 632) ... ok
[INFO] [stdout] test src/sys/flags.rs - sys::flags::SimplificationOptions::filter_sites (line 157) ... ok
[INFO] [stdout] test src/sys/flags.rs - sys::flags::NodeFlags (line 643) ... ok
[INFO] [stdout] test src/sys/flags.rs - sys::flags::SimplificationOptions::keep_unary (line 121) ... ok
[INFO] [stdout] test src/sys/flags.rs - sys::flags::SimplificationOptions::filter_individuals (line 181) ... ok
[INFO] [stdout] test src/sys/flags.rs - sys::flags::SimplificationOptions::reduce_to_site_topology (line 169) ... ok
[INFO] [stdout] test src/sys/flags.rs - sys::flags::NodeFlags (line 653) ... ok
[INFO] [stdout] test src/sys/flags.rs - sys::flags::SimplificationOptions::filter_populations (line 145) ... ok
[INFO] [stdout] test src/sys/flags.rs - sys::flags::TableClearOptions (line 204) ... ok
[INFO] [stdout] test src/sys/flags.rs - sys::flags::SimplificationOptions (line 65) ... ok
[INFO] [stdout] test src/sys/flags.rs - sys::flags::SimplificationOptions::keep_input_roots (line 109) ... ok
[INFO] [stdout] test src/sys/flags.rs - sys::flags::SimplificationOptions::keep_unary_in_individuals (line 133) ... ok
[INFO] [stdout] test src/sys/flags.rs - sys::flags::TableClearOptions (line 216) ... ok
[INFO] [stdout] test src/sys/flags.rs - sys::flags::TableClearOptions (line 210) ... ok
[INFO] [stdout] test src/sys/flags.rs - sys::flags::TableClearOptions (line 230) ... ok
[INFO] [stdout] test src/sys/flags.rs - sys::flags::TableClearOptions (line 196) ... ok
[INFO] [stdout] test src/sys/flags.rs - sys::flags::TableEqualityOptions (line 275) ... ok
[INFO] [stdout] test src/sys/flags.rs - sys::flags::TableEqualityOptions (line 298) ... ok
[INFO] [stdout] test src/sys/flags.rs - sys::flags::TableEqualityOptions (line 269) ... ok
[INFO] [stdout] test src/sys/flags.rs - sys::flags::TableIntegrityCheckFlags (line 517) ... ok
[INFO] [stdout] test src/sys/flags.rs - sys::flags::TableEqualityOptions (line 261) ... ok
[INFO] [stdout] test src/sys/flags.rs - sys::flags::TableEqualityOptions (line 287) ... ok
[INFO] [stdout] test src/sys/flags.rs - sys::flags::TableEqualityOptions (line 281) ... ok
[INFO] [stdout] test src/sys/flags.rs - sys::flags::TableIntegrityCheckFlags (line 527) ... FAILED
[INFO] [stdout] test src/sys/flags.rs - sys::flags::TableIntegrityCheckFlags (line 539) ... ok
[INFO] [stdout] test src/sys/flags.rs - sys::flags::TableIntegrityCheckFlags (line 545) ... ok
[INFO] [stdout] test src/sys/flags.rs - sys::flags::TableIntegrityCheckFlags (line 533) ... ok
[INFO] [stdout] test src/sys/flags.rs - sys::flags::TableIntegrityCheckFlags (line 569) ... ok
[INFO] [stdout] test src/sys/flags.rs - sys::flags::TableIntegrityCheckFlags (line 551) ... ok
[INFO] [stdout] test src/sys/flags.rs - sys::flags::TableIntegrityCheckFlags (line 557) ... ok
[INFO] [stdout] test src/sys/flags.rs - sys::flags::TableOutputOptions (line 448) ... ok
[INFO] [stdout] test src/sys/flags.rs - sys::flags::TableIntegrityCheckFlags (line 563) ... ok
[INFO] [stdout] test src/sys/flags.rs - sys::flags::TreeSequenceFlags (line 477) ... ok
[INFO] [stdout] test src/sys/flags.rs - sys::flags::TreeSequenceFlags (line 487) ... ok
[INFO] [stdout] test src/sys/flags.rs - sys::flags::TableSortOptions (line 338) ... ok
[INFO] [stdout] test src/sys/flags.rs - sys::flags::TreeFlags (line 413) ... ok
[INFO] [stdout] test src/sys/flags.rs - sys::flags::TreeFlags (line 407) ... ok
[INFO] [stdout] test src/sys/flags.rs - sys::flags::TableSortOptions (line 348) ... ok
[INFO] [stdout] test src/table_collection.rs - table_collection::TableCollection::add_edge (line 208) ... ok
[INFO] [stdout] test src/table_collection.rs - table_collection::TableCollection (line 43) ... ok
[INFO] [stdout] test src/sys/flags.rs - sys::flags::TreeFlags (line 397) ... ok
[INFO] [stdout] test src/table_collection.rs - table_collection::TableCollection::add_edge (line 194) ... ok
[INFO] [stdout] test src/table_collection.rs - table_collection::TableCollection::add_individual_with_metadata (line 327) ... ok
[INFO] [stdout] test src/table_collection.rs - table_collection::TableCollection::add_migration_with_metadata (line 403) ... ok
[INFO] [stdout] test src/table_collection.rs - table_collection::TableCollection::add_edge_with_metadata (line 236) ... ok
[INFO] [stdout] test src/table_collection.rs - table_collection::TableCollection::add_mutation_with_metadata (line 593) ... ok
[INFO] [stdout] test src/table_collection.rs - table_collection::TableCollection::add_node_with_metadata (line 492) ... ok
[INFO] [stdout] test src/table_collection.rs - table_collection::TableCollection::add_edge (line 180) ... ok
[INFO] [stdout] test src/table_collection.rs - table_collection::TableCollection::add_individual (line 273) ... ok
[INFO] [stdout] test src/table_collection.rs - table_collection::TableCollection::add_individual (line 294) ... ok
[INFO] [stdout] test src/table_collection.rs - table_collection::TableCollection::add_migration (line 368) ... ok
[INFO] [stdout] test src/table_collection.rs - table_collection::TableCollection::add_population_with_metadata (line 652) ... ok
[INFO] [stdout] test src/table_collection.rs - table_collection::TableCollection::add_individual (line 283) ... ok
[INFO] [stdout] test src/table_collection.rs - table_collection::TableCollection::add_node_with_defaults (line 468) ... ok
[INFO] [stdout] test src/table_collection.rs - table_collection::TableCollection::add_site_with_metadata (line 540) ... ok
[INFO] [stdout] test src/table_collection.rs - table_collection::TableCollection::add_population (line 636) ... ok
[INFO] [stdout] test src/table_collection.rs - table_collection::TableCollection::check_integrity (line 975) ... ok
[INFO] [stdout] test src/table_collection.rs - table_collection::TableCollection::set_edges (line 1070) - compile fail ... ok
[INFO] [stdout] test src/table_collection.rs - table_collection::TableCollection::check_integrity (line 968) ... ok
[INFO] [stdout] test src/table_collection.rs - table_collection::TableCollection::check_integrity (line 982) ... ok
[INFO] [stdout] test src/table_collection.rs - table_collection::TableCollection::sequence_length (line 168) ... ok
[INFO] [stdout] test src/table_collection.rs - table_collection::TableCollection::create_node_id_vector (line 1381) ... ok
[INFO] [stdout] test src/table_collection.rs - table_collection::TableCollection::new_from_file (line 122) ... FAILED
[INFO] [stdout] test src/table_collection.rs - table_collection::TableCollection::set_edges (line 1057) ... ok
[INFO] [stdout] test src/table_collection.rs - table_collection::TableCollection::new (line 76) ... ok
[INFO] [stdout] test src/table_collection.rs - table_collection::TableCollection::set_individuals (line 1212) ... ok
[INFO] [stdout] test src/tree_interface.rs - tree_interface::TreeInterface::left_child_array (line 269) - compile fail ... ok
[INFO] [stdout] test src/table_collection.rs - table_collection::TableCollection::set_populations (line 1290) ... ok
[INFO] [stdout] test src/table_collection.rs - table_collection::TableCollection::set_migrations (line 1251) ... ok
[INFO] [stdout] test src/table_views.rs - table_views::TableViews::create_node_id_vector (line 237) ... ok
[INFO] [stdout] test src/table_collection.rs - table_collection::TableCollection::set_nodes (line 1100) ... ok
[INFO] [stdout] test src/tree_interface.rs - tree_interface::TreeInterface::left_sib_array (line 229) - compile fail ... ok
[INFO] [stdout] test src/tree_interface.rs - tree_interface::TreeInterface::next_sample_array (line 132) - compile fail ... ok
[INFO] [stdout] test src/tree_interface.rs - tree_interface::TreeInterface::left_sample_array (line 169) - compile fail ... ok
[INFO] [stdout] test src/tree_interface.rs - tree_interface::TreeInterface::right_child_array (line 289) - compile fail ... ok
[INFO] [stdout] test src/table_collection.rs - table_collection::TableCollection::topological_sort_individuals (line 777) ... ok
[INFO] [stdout] test src/table_collection.rs - table_collection::TableCollection::set_mutations (line 1173) ... ok
[INFO] [stdout] test src/tree_interface.rs - tree_interface::TreeInterface::parent_array (line 59) - compile fail ... ok
[INFO] [stdout] test src/tree_interface.rs - tree_interface::TreeInterface::right_sample_array (line 206) - compile fail ... ok
[INFO] [stdout] test src/tree_interface.rs - tree_interface::TreeInterface::right_sib_array (line 249) - compile fail ... ok
[INFO] [stdout] test src/tree_interface.rs - tree_interface::TreeInterface::samples_array (line 93) - compile fail ... ok
[INFO] [stdout] test src/table_collection.rs - table_collection::TableCollection::set_sites (line 1137) ... ok
[INFO] [stdout] test src/tree_interface.rs - tree_interface::TreeInterface::next_sample_array (line 118) ... ok
[INFO] [stdout] test src/trees/treeseq.rs - trees::treeseq::TreeSequence (line 44) - compile fail ... ok
[INFO] [stdout] test src/tree_interface.rs - tree_interface::TreeInterface::left_sample_array (line 155) ... ok
[INFO] [stdout] test src/trees/treeseq.rs - trees::treeseq::TreeSequence::new (line 101) ... ok
[INFO] [stdout] test src/trees/treeseq.rs - trees::treeseq::TreeSequence::tree_iterator (line 229) - compile ... ok
[INFO] [stdout] test src/trees/treeseq.rs - trees::treeseq::TreeSequence::new (line 93) ... ok
[INFO] [stdout] test src/tree_interface.rs - tree_interface::TreeInterface::samples_array (line 79) ... ok
[INFO] [stdout] test src/trees/treeseq.rs - trees::treeseq::TreeSequence::new (line 84) ... ok
[INFO] [stdout] test src/tree_interface.rs - tree_interface::TreeInterface::right_sample_array (line 192) ... ok
[INFO] [stdout] test src/trees/treeseq.rs - trees::treeseq::TreeSequence::tree_iterator (line 193) ... ok
[INFO] [stdout] test src/trees/treeseq.rs - trees::treeseq::TreeSequence (line 25) ... ok
[INFO] [stdout] test src/trees/treeseq.rs - trees::treeseq::TreeSequence::create_node_id_vector (line 420) ... ok
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout] 
[INFO] [stdout] ---- src/sys/flags.rs - sys::flags::TableIntegrityCheckFlags (line 527) stdout ----
[INFO] [stdout] error: linking with `cc` failed: exit status: 1
[INFO] [stdout]   |
[INFO] [stdout]   = note: LC_ALL="C" PATH="/opt/rustwide/rustup-home/toolchains/beta-2024-12-08-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/bin:/opt/rustwide/cargo-home/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin" VSLANG="1033" "cc" "-m64" "/tmp/rustcOtUWgY/symbols.o" "/tmp/rustdoctestCJ3dkF/rust_out.rust_out.9242fac72db2cd11-cgu.0.rcgu.o" "/tmp/rustdoctestCJ3dkF/rust_out.2hl2tb9xdtge7mguxzn2q1kvi.rcgu.o" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/libtskit-05eca7c1cd46af4e.rlib" "/opt/rustwide/target/debug/deps/liblibc-407ee67b1ec3589e.rlib" "/opt/rustwide/target/debug/deps/libbitflags-73a3465e70e0bb19.rlib" "/opt/rustwide/target/debug/deps/libthiserror-87f6fae54eaba9b2.rlib" "/opt/rustwide/target/debug/deps/libstreaming_iterator-6febc94beb823ecb.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-12-08-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libstd-02dc84f49135b6b8.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-12-08-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libpanic_unwind-a8f45b397fae3f81.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-12-08-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libobject-089607133c180609.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-12-08-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libmemchr-fc89f091bcd86cbb.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-12-08-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libaddr2line-5a60949f01c7340c.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-12-08-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libgimli-d29e6a55ca253c8c.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-12-08-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_demangle-273c078d5f65de7a.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-12-08-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libstd_detect-413c950ffbdd4454.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-12-08-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libhashbrown-1853c0976a1d88a6.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-12-08-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_alloc-ccb3384ddacb0f9e.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-12-08-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libminiz_oxide-0b901dfb0ca849e0.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-12-08-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libadler-eebeb8d7c64543ad.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-12-08-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libunwind-4723ef81d6079867.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-12-08-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcfg_if-54442f8b422f5a54.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-12-08-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/liblibc-e0bbe034b5282553.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-12-08-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/liballoc-d0febb68c1c37b90.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-12-08-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_core-4cf833632aafa84c.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-12-08-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcore-65c2c6d2d6ae570b.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-12-08-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcompiler_builtins-97929cee0dcfe424.rlib" "-Wl,-Bdynamic" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/target/debug/build/tskit-36d7e549d1b2e120/out" "-L" "/opt/rustwide/rustup-home/toolchains/beta-2024-12-08-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/tmp/rustdoctestCJ3dkF/rust_out" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs"
[INFO] [stdout]   = note: /usr/bin/ld: final link failed: No space left on device
[INFO] [stdout]           collect2: error: ld returned 1 exit status
[INFO] [stdout]           
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to 1 previous error
[INFO] [stdout] 
[INFO] [stdout] Couldn't compile the test.
[INFO] [stdout] ---- src/table_collection.rs - table_collection::TableCollection::new_from_file (line 122) stdout ----
[INFO] [stdout] Test executable failed (exit status: 101).
[INFO] [stdout] 
[INFO] [stdout] stderr:
[INFO] [stdout] thread 'main' panicked at src/table_collection.rs:6:71:
[INFO] [stdout] called `Result::unwrap()` on an `Err` value: ErrorCode { code: -3 }
[INFO] [stdout] stack backtrace:
[INFO] [stdout]    0:     0x55fd67bf870a - std::backtrace_rs::backtrace::libunwind::trace::h8810477743020387
[INFO] [stdout]                                at /rustc/202008a1b8de96d2e5b6bc02d379db03a877d34d/library/std/src/../../backtrace/src/backtrace/libunwind.rs:116:5
[INFO] [stdout]    1:     0x55fd67bf870a - std::backtrace_rs::backtrace::trace_unsynchronized::h3aa55355dd6c54a6
[INFO] [stdout]                                at /rustc/202008a1b8de96d2e5b6bc02d379db03a877d34d/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5
[INFO] [stdout]    2:     0x55fd67bf870a - std::sys::backtrace::_print_fmt::h8588b0f62410823f
[INFO] [stdout]                                at /rustc/202008a1b8de96d2e5b6bc02d379db03a877d34d/library/std/src/sys/backtrace.rs:66:9
[INFO] [stdout]    3:     0x55fd67bf870a - <std::sys::backtrace::BacktraceLock::print::DisplayBacktrace as core::fmt::Display>::fmt::h98c26ac25ffe89bb
[INFO] [stdout]                                at /rustc/202008a1b8de96d2e5b6bc02d379db03a877d34d/library/std/src/sys/backtrace.rs:39:26
[INFO] [stdout]    4:     0x55fd67c17ce3 - core::fmt::rt::Argument::fmt::hf95377f4aebd453b
[INFO] [stdout]                                at /rustc/202008a1b8de96d2e5b6bc02d379db03a877d34d/library/core/src/fmt/rt.rs:177:76
[INFO] [stdout]    5:     0x55fd67c17ce3 - core::fmt::write::h0dd5f6e2238c7982
[INFO] [stdout]                                at /rustc/202008a1b8de96d2e5b6bc02d379db03a877d34d/library/core/src/fmt/mod.rs:1189:21
[INFO] [stdout]    6:     0x55fd67bf6483 - std::io::Write::write_fmt::hc00bff0a88e08857
[INFO] [stdout]                                at /rustc/202008a1b8de96d2e5b6bc02d379db03a877d34d/library/std/src/io/mod.rs:1884:15
[INFO] [stdout]    7:     0x55fd67bf8552 - std::sys::backtrace::BacktraceLock::print::h5c19c1c038ee186d
[INFO] [stdout]                                at /rustc/202008a1b8de96d2e5b6bc02d379db03a877d34d/library/std/src/sys/backtrace.rs:42:9
[INFO] [stdout]    8:     0x55fd67bf951c - std::panicking::default_hook::{{closure}}::h77172f079a1fcb13
[INFO] [stdout]                                at /rustc/202008a1b8de96d2e5b6bc02d379db03a877d34d/library/std/src/panicking.rs:268:22
[INFO] [stdout]    9:     0x55fd67bf9362 - std::panicking::default_hook::he5f8e3b203ccddba
[INFO] [stdout]                                at /rustc/202008a1b8de96d2e5b6bc02d379db03a877d34d/library/std/src/panicking.rs:295:9
[INFO] [stdout]   10:     0x55fd67bf9af7 - std::panicking::rust_panic_with_hook::h53863d4e9018df39
[INFO] [stdout]                                at /rustc/202008a1b8de96d2e5b6bc02d379db03a877d34d/library/std/src/panicking.rs:801:13
[INFO] [stdout]   11:     0x55fd67bf998a - std::panicking::begin_panic_handler::{{closure}}::h67280e6fa0757873
[INFO] [stdout]                                at /rustc/202008a1b8de96d2e5b6bc02d379db03a877d34d/library/std/src/panicking.rs:674:13
[INFO] [stdout]   12:     0x55fd67bf8be9 - std::sys::backtrace::__rust_end_short_backtrace::h1dac3f54d6fbbeb2
[INFO] [stdout]                                at /rustc/202008a1b8de96d2e5b6bc02d379db03a877d34d/library/std/src/sys/backtrace.rs:170:18
[INFO] [stdout]   13:     0x55fd67bf961c - rust_begin_unwind
[INFO] [stdout]                                at /rustc/202008a1b8de96d2e5b6bc02d379db03a877d34d/library/std/src/panicking.rs:665:5
[INFO] [stdout]   14:     0x55fd67bc4240 - core::panicking::panic_fmt::h6792bd1b2bf01041
[INFO] [stdout]                                at /rustc/202008a1b8de96d2e5b6bc02d379db03a877d34d/library/core/src/panicking.rs:76:14
[INFO] [stdout]   15:     0x55fd67bc45e6 - core::result::unwrap_failed::h05e0602ed34287c5
[INFO] [stdout]                                at /rustc/202008a1b8de96d2e5b6bc02d379db03a877d34d/library/core/src/result.rs:1699:5
[INFO] [stdout]   16:     0x55fd67bc866e - rust_out::main::_doctest_main_src_table_collection_rs_122_0::h3eee2a730eab5448
[INFO] [stdout]   17:     0x55fd67bc8446 - rust_out::main::h57eefffa92e38ed0
[INFO] [stdout]   18:     0x55fd67bc5433 - core::ops::function::FnOnce::call_once::hcb3872443a25b5b7
[INFO] [stdout]   19:     0x55fd67bc4df6 - std::sys::backtrace::__rust_begin_short_backtrace::hb8f53f53663d2e9e
[INFO] [stdout]   20:     0x55fd67bc4dd9 - std::rt::lang_start::{{closure}}::h0d6bdb8cb611c7e9
[INFO] [stdout]   21:     0x55fd67bf4887 - core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once::hba2470d01d3f5e41
[INFO] [stdout]                                at /rustc/202008a1b8de96d2e5b6bc02d379db03a877d34d/library/core/src/ops/function.rs:284:13
[INFO] [stdout]   22:     0x55fd67bf4887 - std::panicking::try::do_call::hc063fb73159aab72
[INFO] [stdout]                                at /rustc/202008a1b8de96d2e5b6bc02d379db03a877d34d/library/std/src/panicking.rs:557:40
[INFO] [stdout]   23:     0x55fd67bf4887 - std::panicking::try::h2767c6d245d3a3bb
[INFO] [stdout]                                at /rustc/202008a1b8de96d2e5b6bc02d379db03a877d34d/library/std/src/panicking.rs:520:19
[INFO] [stdout]   24:     0x55fd67bf4887 - std::panic::catch_unwind::h061c6ef75790da63
[INFO] [stdout]                                at /rustc/202008a1b8de96d2e5b6bc02d379db03a877d34d/library/std/src/panic.rs:358:14
[INFO] [stdout]   25:     0x55fd67bf4887 - std::rt::lang_start_internal::{{closure}}::h5c5e35b11a4b8c4e
[INFO] [stdout]                                at /rustc/202008a1b8de96d2e5b6bc02d379db03a877d34d/library/std/src/rt.rs:174:48
[INFO] [stdout]   26:     0x55fd67bf4887 - std::panicking::try::do_call::h705e99690a8109cc
[INFO] [stdout]                                at /rustc/202008a1b8de96d2e5b6bc02d379db03a877d34d/library/std/src/panicking.rs:557:40
[INFO] [stdout]   27:     0x55fd67bf4887 - std::panicking::try::he5f4452754ed9a34
[INFO] [stdout]                                at /rustc/202008a1b8de96d2e5b6bc02d379db03a877d34d/library/std/src/panicking.rs:520:19
[INFO] [stdout]   28:     0x55fd67bf4887 - std::panic::catch_unwind::h5db61b3bcbe883e5
[INFO] [stdout]                                at /rustc/202008a1b8de96d2e5b6bc02d379db03a877d34d/library/std/src/panic.rs:358:14
[INFO] [stdout]   29:     0x55fd67bf4887 - std::rt::lang_start_internal::h81da9b59bab665c6
[INFO] [stdout]                                at /rustc/202008a1b8de96d2e5b6bc02d379db03a877d34d/library/std/src/rt.rs:174:20
[INFO] [stdout]   30:     0x55fd67bc4db7 - std::rt::lang_start::h2798034e47ddebf9
[INFO] [stdout]   31:     0x55fd67bc8ee5 - main
[INFO] [stdout]   32:     0x7fc674919d90 - <unknown>
[INFO] [stdout]   33:     0x7fc674919e40 - __libc_start_main
[INFO] [stdout]   34:     0x55fd67bc4805 - _start
[INFO] [stdout]   35:                0x0 - <unknown>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout]     src/sys/flags.rs - sys::flags::TableIntegrityCheckFlags (line 527)
[INFO] [stdout]     src/table_collection.rs - table_collection::TableCollection::new_from_file (line 122)
[INFO] [stdout] 
[INFO] [stdout] test result: FAILED. 145 passed; 2 failed; 0 ignored; 0 measured; 0 filtered out; finished in 33.76s
[INFO] [stdout] 
[INFO] [stderr] error: doctest failed, to rerun pass `--doc`
[INFO] running `Command { std: "docker" "inspect" "0a807287201d73e209a739b5c589272202399a4f48a2f5662003f777a3d38a99", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "0a807287201d73e209a739b5c589272202399a4f48a2f5662003f777a3d38a99", kill_on_drop: false }`
[INFO] [stdout] 0a807287201d73e209a739b5c589272202399a4f48a2f5662003f777a3d38a99
