[INFO] fetching crate spdkit-surface 0.1.1...
[INFO] testing spdkit-surface-0.1.1 against beta-2024-10-19 for beta-1.83-1
[INFO] extracting crate spdkit-surface 0.1.1 into /workspace/builds/worker-6-tc2/source
[INFO] validating manifest of crates.io crate spdkit-surface 0.1.1 on toolchain beta-2024-10-19
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2024-10-19" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate spdkit-surface 0.1.1
[INFO] finished tweaking crates.io crate spdkit-surface 0.1.1
[INFO] tweaked toml for crates.io crate spdkit-surface 0.1.1 written to /workspace/builds/worker-6-tc2/source/Cargo.toml
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2024-10-19" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]      Locking 209 packages to latest compatible versions
[INFO] [stderr]       Adding handlebars v4.0.1 (available: v4.5.0)
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[INFO] [stderr]    Compiling gchemol-gut v0.4.4
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[INFO] [stderr]    Compiling octree v0.1.0
[INFO] [stderr]    Compiling gchemol-lattice v0.1.2
[INFO] [stderr]    Compiling gchemol-geometry v0.1.1
[INFO] [stderr]    Compiling gchemol-neighbors v0.1.3
[INFO] [stderr]    Compiling gchemol-core v0.1.7
[INFO] [stderr]    Compiling gchemol-readwrite v0.1.11
[INFO] [stderr]    Compiling gchemol v0.1.7
[INFO] [stderr]    Compiling spdkit-surface v0.1.1 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `gchemol::Lattice`
[INFO] [stdout]  --> src/layers.rs:4:5
[INFO] [stdout]   |
[INFO] [stdout] 4 | use gchemol::Lattice;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `gchemol::prelude::*`
[INFO] [stdout]   --> src/lib.rs:11:13
[INFO] [stdout]    |
[INFO] [stdout] 11 |     pub use gchemol::prelude::*;
[INFO] [stdout]    |             ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `gchemol::Atom::label`: use get_label instead
[INFO] [stdout]   --> src/layers.rs:17:33
[INFO] [stdout]    |
[INFO] [stdout] 17 |     mol.atoms().find(|(_, a)| a.label() == format!("{i}")).is_some()
[INFO] [stdout]    |                                 ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `gchemol::Atom::label`: use get_label instead
[INFO] [stdout]   --> src/layers.rs:28:32
[INFO] [stdout]    |
[INFO] [stdout] 28 |     mol.atoms().map(|(_, a)| a.label().parse().unwrap()).collect()
[INFO] [stdout]    |                                ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `n_probes`
[INFO] [stdout]   --> src/probe.rs:71:59
[INFO] [stdout]    |
[INFO] [stdout] 71 | pub fn probe_surface_atoms(mol: &Molecule, r_cutoff: f64, n_probes: usize) -> Result<Vec<usize>> {
[INFO] [stdout]    |                                                           ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_n_probes`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 52.88s
[INFO] running `Command { std: "docker" "inspect" "d1607e0bdfb2bc17030b07478f02160ab71cef6b5ad7805de100b6aeee0b83e0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d1607e0bdfb2bc17030b07478f02160ab71cef6b5ad7805de100b6aeee0b83e0", kill_on_drop: false }`
[INFO] [stdout] d1607e0bdfb2bc17030b07478f02160ab71cef6b5ad7805de100b6aeee0b83e0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4a844ea9eb2546a2d2c7022eacef16ef2e8229c7fbb2c7d4d55a9ceca922f72d" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2024-10-19" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 6da1762aad2614f3efb011075b3822cc9d925401a8d7e699ba342793805776d3
[INFO] running `Command { std: "docker" "start" "-a" "6da1762aad2614f3efb011075b3822cc9d925401a8d7e699ba342793805776d3", kill_on_drop: false }`
[INFO] [stderr]    Compiling spdkit-surface v0.1.1 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `gchemol::Lattice`
[INFO] [stdout]  --> src/layers.rs:4:5
[INFO] [stdout]   |
[INFO] [stdout] 4 | use gchemol::Lattice;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `gchemol::prelude::*`
[INFO] [stdout]   --> src/lib.rs:11:13
[INFO] [stdout]    |
[INFO] [stdout] 11 |     pub use gchemol::prelude::*;
[INFO] [stdout]    |             ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `gchemol::Atom::label`: use get_label instead
[INFO] [stdout]   --> src/layers.rs:17:33
[INFO] [stdout]    |
[INFO] [stdout] 17 |     mol.atoms().find(|(_, a)| a.label() == format!("{i}")).is_some()
[INFO] [stdout]    |                                 ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `gchemol::Atom::label`: use get_label instead
[INFO] [stdout]   --> src/layers.rs:28:32
[INFO] [stdout]    |
[INFO] [stdout] 28 |     mol.atoms().map(|(_, a)| a.label().parse().unwrap()).collect()
[INFO] [stdout]    |                                ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `n_probes`
[INFO] [stdout]   --> src/probe.rs:71:59
[INFO] [stdout]    |
[INFO] [stdout] 71 | pub fn probe_surface_atoms(mol: &Molecule, r_cutoff: f64, n_probes: usize) -> Result<Vec<usize>> {
[INFO] [stdout]    |                                                           ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_n_probes`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `gchemol::Lattice`
[INFO] [stdout]  --> src/layers.rs:4:5
[INFO] [stdout]   |
[INFO] [stdout] 4 | use gchemol::Lattice;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `gchemol::Atom::label`: use get_label instead
[INFO] [stdout]   --> src/layers.rs:17:33
[INFO] [stdout]    |
[INFO] [stdout] 17 |     mol.atoms().find(|(_, a)| a.label() == format!("{i}")).is_some()
[INFO] [stdout]    |                                 ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `gchemol::Atom::label`: use get_label instead
[INFO] [stdout]   --> src/layers.rs:28:32
[INFO] [stdout]    |
[INFO] [stdout] 28 |     mol.atoms().map(|(_, a)| a.label().parse().unwrap()).collect()
[INFO] [stdout]    |                                ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `n_probes`
[INFO] [stdout]   --> src/probe.rs:71:59
[INFO] [stdout]    |
[INFO] [stdout] 71 | pub fn probe_surface_atoms(mol: &Molecule, r_cutoff: f64, n_probes: usize) -> Result<Vec<usize>> {
[INFO] [stdout]    |                                                           ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_n_probes`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 8.99s
[INFO] running `Command { std: "docker" "inspect" "6da1762aad2614f3efb011075b3822cc9d925401a8d7e699ba342793805776d3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "6da1762aad2614f3efb011075b3822cc9d925401a8d7e699ba342793805776d3", kill_on_drop: false }`
[INFO] [stdout] 6da1762aad2614f3efb011075b3822cc9d925401a8d7e699ba342793805776d3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4a844ea9eb2546a2d2c7022eacef16ef2e8229c7fbb2c7d4d55a9ceca922f72d" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2024-10-19" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 91d85bdeecc6f7a2222eec6e61cadcd527c07a99b2c25ef67d980fc4494298f3
[INFO] running `Command { std: "docker" "start" "-a" "91d85bdeecc6f7a2222eec6e61cadcd527c07a99b2c25ef67d980fc4494298f3", kill_on_drop: false }`
[INFO] [stderr] warning: unused import: `gchemol::Lattice`
[INFO] [stderr]  --> src/layers.rs:4:5
[INFO] [stderr]   |
[INFO] [stderr] 4 | use gchemol::Lattice;
[INFO] [stderr]   |     ^^^^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `gchemol::prelude::*`
[INFO] [stderr]   --> src/lib.rs:11:13
[INFO] [stderr]    |
[INFO] [stderr] 11 |     pub use gchemol::prelude::*;
[INFO] [stderr]    |             ^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated method `gchemol::Atom::label`: use get_label instead
[INFO] [stderr]   --> src/layers.rs:17:33
[INFO] [stderr]    |
[INFO] [stderr] 17 |     mol.atoms().find(|(_, a)| a.label() == format!("{i}")).is_some()
[INFO] [stderr]    |                                 ^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(deprecated)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated method `gchemol::Atom::label`: use get_label instead
[INFO] [stderr]   --> src/layers.rs:28:32
[INFO] [stderr]    |
[INFO] [stderr] 28 |     mol.atoms().map(|(_, a)| a.label().parse().unwrap()).collect()
[INFO] [stderr]    |                                ^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `n_probes`
[INFO] [stderr]   --> src/probe.rs:71:59
[INFO] [stderr]    |
[INFO] [stderr] 71 | pub fn probe_surface_atoms(mol: &Molecule, r_cutoff: f64, n_probes: usize) -> Result<Vec<usize>> {
[INFO] [stderr]    |                                                           ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_n_probes`
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(unused_variables)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: `spdkit-surface` (lib) generated 5 warnings (run `cargo fix --lib -p spdkit-surface` to apply 2 suggestions)
[INFO] [stderr] warning: `spdkit-surface` (lib test) generated 4 warnings (4 duplicates)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.19s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/spdkit_surface-75d5770418d233a1)
[INFO] [stdout] 
[INFO] [stdout] running 2 tests
[INFO] [stdout] test layers::test_atom_layer ... ok
[INFO] [stdout] test probe::test_probe_surface_atoms ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 2 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.75s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests spdkit_surface
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "91d85bdeecc6f7a2222eec6e61cadcd527c07a99b2c25ef67d980fc4494298f3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "91d85bdeecc6f7a2222eec6e61cadcd527c07a99b2c25ef67d980fc4494298f3", kill_on_drop: false }`
[INFO] [stdout] 91d85bdeecc6f7a2222eec6e61cadcd527c07a99b2c25ef67d980fc4494298f3