[INFO] fetching crate libhmmer-sys-2 0.1.0...
[INFO] testing libhmmer-sys-2-0.1.0 against beta-2024-09-05 for beta-1.82-1
[INFO] extracting crate libhmmer-sys-2 0.1.0 into /workspace/builds/worker-4-tc2/source
[INFO] validating manifest of crates.io crate libhmmer-sys-2 0.1.0 on toolchain beta-2024-09-05
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2024-09-05" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate libhmmer-sys-2 0.1.0
[INFO] finished tweaking crates.io crate libhmmer-sys-2 0.1.0
[INFO] tweaked toml for crates.io crate libhmmer-sys-2 0.1.0 written to /workspace/builds/worker-4-tc2/source/Cargo.toml
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2024-09-05" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]      Locking 48 packages to latest compatible versions
[INFO] [stderr]       Adding bindgen v0.65.1 (latest: v0.70.1)
[INFO] [stderr]       Adding bitflags v1.3.2 (latest: v2.6.0)
[INFO] [stderr]       Adding hermit-abi v0.3.9 (latest: v0.4.0)
[INFO] [stderr]       Adding linux-raw-sys v0.4.14 (latest: v0.6.5)
[INFO] [stderr]       Adding peeking_take_while v0.1.2 (latest: v1.0.0)
[INFO] [stderr]       Adding rustc-hash v1.1.0 (latest: v2.0.0)
[INFO] [stderr]       Adding which v4.4.2 (latest: v6.0.3)
[INFO] [stderr]       Adding windows-sys v0.52.0 (latest: v0.59.0)
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2024-09-05" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:96c0aa5895ecf336b730ef27bcdde6e21027415df19888aad3cf1448e5d65d90" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2024-09-05" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 358477b809eab3fa2cfd3ec13d0b40b87e13240d66fbd8c2a1f5d23c6d20b326
[INFO] running `Command { std: "docker" "start" "-a" "358477b809eab3fa2cfd3ec13d0b40b87e13240d66fbd8c2a1f5d23c6d20b326", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "358477b809eab3fa2cfd3ec13d0b40b87e13240d66fbd8c2a1f5d23c6d20b326", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "358477b809eab3fa2cfd3ec13d0b40b87e13240d66fbd8c2a1f5d23c6d20b326", kill_on_drop: false }`
[INFO] [stdout] 358477b809eab3fa2cfd3ec13d0b40b87e13240d66fbd8c2a1f5d23c6d20b326
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:96c0aa5895ecf336b730ef27bcdde6e21027415df19888aad3cf1448e5d65d90" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2024-09-05" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] c0b483ad3ee95cdf811fbc1bab5b9d916fedd247c009a38f05d02722f8d9fcf3
[INFO] running `Command { std: "docker" "start" "-a" "c0b483ad3ee95cdf811fbc1bab5b9d916fedd247c009a38f05d02722f8d9fcf3", kill_on_drop: false }`
[INFO] [stderr]    Compiling glob v0.3.1
[INFO] [stderr]    Compiling rustix v0.38.36
[INFO] [stderr]    Compiling memchr v2.7.4
[INFO] [stderr]    Compiling minimal-lexical v0.2.1
[INFO] [stderr]    Compiling regex-syntax v0.8.4
[INFO] [stderr]    Compiling bitflags v2.6.0
[INFO] [stderr]    Compiling libc v0.2.158
[INFO] [stderr]    Compiling linux-raw-sys v0.4.14
[INFO] [stderr]    Compiling bindgen v0.65.1
[INFO] [stderr]    Compiling home v0.5.9
[INFO] [stderr]    Compiling either v1.13.0
[INFO] [stderr]    Compiling lazycell v1.3.0
[INFO] [stderr]    Compiling quote v1.0.37
[INFO] [stderr]    Compiling libloading v0.8.5
[INFO] [stderr]    Compiling bitflags v1.3.2
[INFO] [stderr]    Compiling peeking_take_while v0.1.2
[INFO] [stderr]    Compiling log v0.4.22
[INFO] [stderr]    Compiling fs_extra v1.3.0
[INFO] [stderr]    Compiling syn v2.0.77
[INFO] [stderr]    Compiling clang-sys v1.8.1
[INFO] [stderr]    Compiling num_cpus v1.16.0
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]    Compiling regex-automata v0.4.7
[INFO] [stderr]    Compiling which v4.4.2
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]    Compiling regex v1.10.6
[INFO] [stderr]    Compiling prettyplease v0.2.22
[INFO] [stderr]    Compiling libhmmer-sys-2 v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 25.38s
[INFO] running `Command { std: "docker" "inspect" "c0b483ad3ee95cdf811fbc1bab5b9d916fedd247c009a38f05d02722f8d9fcf3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c0b483ad3ee95cdf811fbc1bab5b9d916fedd247c009a38f05d02722f8d9fcf3", kill_on_drop: false }`
[INFO] [stdout] c0b483ad3ee95cdf811fbc1bab5b9d916fedd247c009a38f05d02722f8d9fcf3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:96c0aa5895ecf336b730ef27bcdde6e21027415df19888aad3cf1448e5d65d90" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2024-09-05" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 75964f3e36870ae9a93b21aec64b7b021c4f3be365c7197bf299cb5e3ac9e170
[INFO] running `Command { std: "docker" "start" "-a" "75964f3e36870ae9a93b21aec64b7b021c4f3be365c7197bf299cb5e3ac9e170", kill_on_drop: false }`
[INFO] [stderr]    Compiling libhmmer-sys-2 v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 6.97s
[INFO] running `Command { std: "docker" "inspect" "75964f3e36870ae9a93b21aec64b7b021c4f3be365c7197bf299cb5e3ac9e170", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "75964f3e36870ae9a93b21aec64b7b021c4f3be365c7197bf299cb5e3ac9e170", kill_on_drop: false }`
[INFO] [stdout] 75964f3e36870ae9a93b21aec64b7b021c4f3be365c7197bf299cb5e3ac9e170
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:96c0aa5895ecf336b730ef27bcdde6e21027415df19888aad3cf1448e5d65d90" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2024-09-05" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 90ba236b3fc731504ac322e3d71fb7a85883462510b4afddae0ebe7039215aeb
[INFO] running `Command { std: "docker" "start" "-a" "90ba236b3fc731504ac322e3d71fb7a85883462510b4afddae0ebe7039215aeb", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.04s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/libhmmer_sys_2-076710bc308d1c4b)
[INFO] [stdout] 
[INFO] [stdout] running 67 tests
[INFO] [stdout] test bindgen_test_layout_ESL_ALPHABET ... ok
[INFO] [stdout] test bindgen_test_layout_ESL_BUFFER ... ok
[INFO] [stdout] test bindgen_test_layout_ESL_FILEPARSER ... ok
[INFO] [stdout] test bindgen_test_layout_ESL_DMATRIX ... ok
[INFO] [stdout] test bindgen_test_layout_ESL_GETOPTS ... ok
[INFO] [stdout] test bindgen_test_layout_ESL_BITFIELD ... ok
[INFO] [stdout] test bindgen_test_layout_ESL_HISTOGRAM ... ok
[INFO] [stdout] test bindgen_test_layout_ESL_HMM ... ok
[INFO] [stdout] test bindgen_test_layout_ESL_HMX ... ok
[INFO] [stdout] test bindgen_test_layout_ESL_KEYHASH ... ok
[INFO] [stdout] test bindgen_test_layout_ESL_MIXDCHLET ... ok
[INFO] [stdout] test bindgen_test_layout_ESL_MSA ... ok
[INFO] [stdout] test bindgen_test_layout_ESL_MSAFILE ... ok
[INFO] [stdout] test bindgen_test_layout_ESL_MSAFILE_FMTDATA ... ok
[INFO] [stdout] test bindgen_test_layout_ESL_NEWSSI ... ok
[INFO] [stdout] test bindgen_test_layout_ESL_OPTIONS ... ok
[INFO] [stdout] test bindgen_test_layout_ESL_PERMUTATION ... ok
[INFO] [stdout] test bindgen_test_layout_ESL_PKEY ... ok
[INFO] [stdout] test bindgen_test_layout_ESL_RAND64 ... ok
[INFO] [stdout] test bindgen_test_layout_ESL_RANDOMNESS ... ok
[INFO] [stdout] test bindgen_test_layout_ESL_SCOREMATRIX ... ok
[INFO] [stdout] test bindgen_test_layout_ESL_SSI ... ok
[INFO] [stdout] test bindgen_test_layout_ESL_SKEY ... ok
[INFO] [stdout] test bindgen_test_layout_ESL_SQ ... ok
[INFO] [stdout] test bindgen_test_layout_ESL_SQ_BLOCK ... ok
[INFO] [stdout] test bindgen_test_layout___va_list_tag ... ok
[INFO] [stdout] test bindgen_test_layout_esl_sqascii_s ... ok
[INFO] [stdout] test bindgen_test_layout_ESL_STOPWATCH ... ok
[INFO] [stdout] test bindgen_test_layout_FM_CFG ... ok
[INFO] [stdout] test bindgen_test_layout_esl_sqcache_s ... ok
[INFO] [stdout] test bindgen_test_layout_esl_sqio_s ... ok
[INFO] [stdout] test bindgen_test_layout_ESL_SQDATA ... ok
[INFO] [stdout] test bindgen_test_layout_esl_sqncbi_s ... ok
[INFO] [stdout] test bindgen_test_layout_esl_sqncbi_vol_s ... ok
[INFO] [stdout] test bindgen_test_layout_P7_OM_BLOCK ... ok
[INFO] [stdout] test bindgen_test_layout__IO_FILE ... ok
[INFO] [stdout] test bindgen_test_layout_fm_data_s ... ok
[INFO] [stdout] test bindgen_test_layout___pthread_mutex_s ... ok
[INFO] [stdout] test bindgen_test_layout_fm_interval_s ... ok
[INFO] [stdout] test bindgen_test_layout_fm_metadata_s ... ok
[INFO] [stdout] test bindgen_test_layout_fm_ambiglist_s ... ok
[INFO] [stdout] test bindgen_test_layout_fm_seqdata_s ... ok
[INFO] [stdout] test bindgen_test_layout_p7_alidisplay_s ... ok
[INFO] [stdout] test bindgen_test_layout_p7_bg_s ... ok
[INFO] [stdout] test bindgen_test_layout_p7_builder_s ... ok
[INFO] [stdout] test bindgen_test_layout_p7_gmx_s ... ok
[INFO] [stdout] test bindgen_test_layout_p7_hmm_s ... ok
[INFO] [stdout] test bindgen_test_layout_p7_domaindef_s ... ok
[INFO] [stdout] test bindgen_test_layout___pthread_internal_list ... ok
[INFO] [stdout] test bindgen_test_layout_p7_hmm_window_list_s ... ok
[INFO] [stdout] test bindgen_test_layout_p7_dom_s ... ok
[INFO] [stdout] test bindgen_test_layout_p7_hmm_window_s ... ok
[INFO] [stdout] test bindgen_test_layout_p7_hmmfile_s ... ok
[INFO] [stdout] test bindgen_test_layout_p7_omx_s ... ok
[INFO] [stdout] test bindgen_test_layout_p7_pipeline_s ... ok
[INFO] [stdout] test bindgen_test_layout_p7_prior_s ... ok
[INFO] [stdout] test bindgen_test_layout_p7_scoredata_s ... ok
[INFO] [stdout] test bindgen_test_layout_p7_profile_s ... ok
[INFO] [stdout] test bindgen_test_layout_p7_scoredata_s__bindgen_ty_1 ... ok
[INFO] [stdout] test bindgen_test_layout_p7_spcoord_s ... ok
[INFO] [stdout] test bindgen_test_layout_p7_hit_s ... ok
[INFO] [stdout] test bindgen_test_layout_pthread_mutex_t ... ok
[INFO] [stdout] test bindgen_test_layout_p7_oprofile_s ... ok
[INFO] [stdout] test bindgen_test_layout_tms ... ok
[INFO] [stdout] test bindgen_test_layout_p7_spensemble_s ... ok
[INFO] [stdout] test bindgen_test_layout_p7_trace_s ... ok
[INFO] [stdout] test bindgen_test_layout_p7_tophits_s ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 67 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests libhmmer_sys_2
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "90ba236b3fc731504ac322e3d71fb7a85883462510b4afddae0ebe7039215aeb", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "90ba236b3fc731504ac322e3d71fb7a85883462510b4afddae0ebe7039215aeb", kill_on_drop: false }`
[INFO] [stdout] 90ba236b3fc731504ac322e3d71fb7a85883462510b4afddae0ebe7039215aeb