[INFO] cloning repository https://github.com/SisyphusMountain/gene_transfer_script [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/SisyphusMountain/gene_transfer_script" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FSisyphusMountain%2Fgene_transfer_script", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FSisyphusMountain%2Fgene_transfer_script'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 9de4d8eb92f7872845b32b8e82bad5cc32905338 [INFO] testing SisyphusMountain/gene_transfer_script/9de4d8eb92f7872845b32b8e82bad5cc32905338 against beta-2024-09-05 for beta-1.82-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FSisyphusMountain%2Fgene_transfer_script" "/workspace/builds/worker-3-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-3-tc2/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/SisyphusMountain/gene_transfer_script on toolchain beta-2024-09-05 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2024-09-05" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/SisyphusMountain/gene_transfer_script [INFO] finished tweaking git repo https://github.com/SisyphusMountain/gene_transfer_script [INFO] tweaked toml for git repo https://github.com/SisyphusMountain/gene_transfer_script written to /workspace/builds/worker-3-tc2/source/Cargo.toml [INFO] crate git repo https://github.com/SisyphusMountain/gene_transfer_script already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2024-09-05" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Updating crates.io index [INFO] [stderr] Blocking waiting for file lock on package cache [ERROR] error running command: no output for 300 seconds [INFO] testing SisyphusMountain/gene_transfer_script/9de4d8eb92f7872845b32b8e82bad5cc32905338 against beta-2024-09-05 for beta-1.82-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FSisyphusMountain%2Fgene_transfer_script" "/workspace/builds/worker-3-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-3-tc2/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/SisyphusMountain/gene_transfer_script on toolchain beta-2024-09-05 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2024-09-05" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/SisyphusMountain/gene_transfer_script [INFO] finished tweaking git repo https://github.com/SisyphusMountain/gene_transfer_script [INFO] tweaked toml for git repo https://github.com/SisyphusMountain/gene_transfer_script written to /workspace/builds/worker-3-tc2/source/Cargo.toml [INFO] crate git repo https://github.com/SisyphusMountain/gene_transfer_script already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2024-09-05" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded newick v0.11.0 [INFO] [stderr] Downloaded prettytable-rs v0.10.0 [INFO] [stderr] Downloaded sorbus v0.12.1 [INFO] [stderr] Downloaded identity-hash v0.1.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:96c0aa5895ecf336b730ef27bcdde6e21027415df19888aad3cf1448e5d65d90" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2024-09-05" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 1a912660a30bc00ff4ff31cda7c86c89ff63f2d307574bb9c3996a3dc9f824eb [INFO] running `Command { std: "docker" "start" "-a" "1a912660a30bc00ff4ff31cda7c86c89ff63f2d307574bb9c3996a3dc9f824eb", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "1a912660a30bc00ff4ff31cda7c86c89ff63f2d307574bb9c3996a3dc9f824eb", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "1a912660a30bc00ff4ff31cda7c86c89ff63f2d307574bb9c3996a3dc9f824eb", kill_on_drop: false }` [INFO] [stdout] 1a912660a30bc00ff4ff31cda7c86c89ff63f2d307574bb9c3996a3dc9f824eb [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:96c0aa5895ecf336b730ef27bcdde6e21027415df19888aad3cf1448e5d65d90" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2024-09-05" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 203b88376828286640589f1ca934472e88b787dc23179402a5eebe2fad853f71 [INFO] running `Command { std: "docker" "start" "-a" "203b88376828286640589f1ca934472e88b787dc23179402a5eebe2fad853f71", kill_on_drop: false }` [INFO] [stderr] Compiling autocfg v1.1.0 [INFO] [stderr] Compiling proc-macro2 v1.0.70 [INFO] [stderr] Compiling memchr v2.6.4 [INFO] [stderr] Compiling libc v0.2.150 [INFO] [stderr] Compiling thiserror v1.0.50 [INFO] [stderr] Compiling ucd-trie v0.1.6 [INFO] [stderr] Compiling once_cell v1.18.0 [INFO] [stderr] Compiling serde v1.0.193 [INFO] [stderr] Compiling rustix v0.38.25 [INFO] [stderr] Compiling linux-raw-sys v0.4.11 [INFO] [stderr] Compiling bitflags v2.4.1 [INFO] [stderr] Compiling num-traits v0.2.17 [INFO] [stderr] Compiling num-integer v0.1.45 [INFO] [stderr] Compiling num-bigint v0.4.4 [INFO] [stderr] Compiling num-iter v0.1.43 [INFO] [stderr] Compiling num-rational v0.4.1 [INFO] [stderr] Compiling quote v1.0.33 [INFO] [stderr] Compiling dirs-sys-next v0.1.2 [INFO] [stderr] Compiling getrandom v0.2.11 [INFO] [stderr] Compiling syn v2.0.39 [INFO] [stderr] Compiling dirs-next v2.0.0 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling aho-corasick v1.1.2 [INFO] [stderr] Compiling csv-core v0.1.11 [INFO] [stderr] Compiling ppv-lite86 v0.2.17 [INFO] [stderr] Compiling itoa v1.0.9 [INFO] [stderr] Compiling equivalent v1.0.1 [INFO] [stderr] Compiling identity-hash v0.1.0 [INFO] [stderr] Compiling regex-syntax v0.8.2 [INFO] [stderr] Compiling powerfmt v0.2.0 [INFO] [stderr] Compiling ryu v1.0.15 [INFO] [stderr] Compiling hashbrown v0.14.3 [INFO] [stderr] Compiling deranged v0.3.9 [INFO] [stderr] Compiling is-terminal v0.4.9 [INFO] [stderr] Compiling num-complex v0.4.4 [INFO] [stderr] Compiling indexmap v2.1.0 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling term v0.7.0 [INFO] [stderr] Compiling encode_unicode v1.0.0 [INFO] [stderr] Compiling regex-automata v0.4.3 [INFO] [stderr] Compiling time-core v0.1.2 [INFO] [stderr] Compiling fixedbitset v0.4.2 [INFO] [stderr] Compiling thiserror-impl v1.0.50 [INFO] [stderr] Compiling csv v1.3.0 [INFO] [stderr] Compiling unicode-width v0.1.11 [INFO] [stderr] Compiling petgraph v0.6.4 [INFO] [stderr] Compiling num v0.4.1 [INFO] [stderr] Compiling time v0.3.30 [INFO] [stderr] Compiling prettytable-rs v0.10.0 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling pest v2.7.5 [INFO] [stderr] Compiling sorbus v0.12.1 [INFO] [stderr] Compiling regex v1.10.2 [INFO] [stderr] Compiling pest_meta v2.7.5 [INFO] [stderr] Compiling pest_generator v2.7.5 [INFO] [stderr] Compiling pest_derive v2.7.5 [INFO] [stderr] Compiling newick v0.11.0 [INFO] [stderr] Compiling gene_transfer_script v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: variable `number_of_trees` is assigned to, but never used [INFO] [stdout] --> src/main.rs:959:13 [INFO] [stdout] | [INFO] [stdout] 959 | let mut number_of_trees = 0; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: consider using `_number_of_trees` instead [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `duration` [INFO] [stdout] --> src/main.rs:993:9 [INFO] [stdout] | [INFO] [stdout] 993 | let duration = start.elapsed(); [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_duration` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `e` [INFO] [stdout] --> src/main.rs:964:78 [INFO] [stdout] | [INFO] [stdout] 964 | let pairs = NewickParser::parse(Rule::newick, &tree).unwrap_or_else(|e| panic!("fail")); [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_e` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `print_flat_node_table` is never used [INFO] [stdout] --> src/main.rs:80:4 [INFO] [stdout] | [INFO] [stdout] 80 | fn print_flat_node_table(flat_nodes: &[FlatNode]) { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `compare_trees` is never used [INFO] [stdout] --> src/main.rs:112:4 [INFO] [stdout] | [INFO] [stdout] 112 | fn compare_trees(node1: &Node, node2: &Node) -> bool { [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `traverse_tree` is never used [INFO] [stdout] --> src/main.rs:139:4 [INFO] [stdout] | [INFO] [stdout] 139 | fn traverse_tree(node: &Node) { [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `total_length_of_flat_tree` is never used [INFO] [stdout] --> src/main.rs:154:4 [INFO] [stdout] | [INFO] [stdout] 154 | fn total_length_of_flat_tree(flat_tree: &[FlatNode]) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `tree_length` is never used [INFO] [stdout] --> src/main.rs:302:4 [INFO] [stdout] | [INFO] [stdout] 302 | fn tree_length(flat_tree: &Vec) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `make_CDF` should have a snake case name [INFO] [stdout] --> src/main.rs:552:4 [INFO] [stdout] | [INFO] [stdout] 552 | fn make_CDF(intervals: Vec, number_of_species: Vec) -> Vec { [INFO] [stdout] | ^^^^^^^^ help: convert the identifier to snake case: `make_cdf` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_snake_case)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `CDF` should have a snake case name [INFO] [stdout] --> src/main.rs:571:13 [INFO] [stdout] | [INFO] [stdout] 571 | let mut CDF: Vec = Vec::new(); [INFO] [stdout] | ^^^ help: convert the identifier to snake case: `cdf` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `choose_from_CDF` should have a snake case name [INFO] [stdout] --> src/main.rs:582:4 [INFO] [stdout] | [INFO] [stdout] 582 | fn choose_from_CDF(CDF: &Vec, depths: &Vec, rng: &mut StdRng) -> (f64, usize) { [INFO] [stdout] | ^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `choose_from_cdf` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `CDF` should have a snake case name [INFO] [stdout] --> src/main.rs:582:20 [INFO] [stdout] | [INFO] [stdout] 582 | fn choose_from_CDF(CDF: &Vec, depths: &Vec, rng: &mut StdRng) -> (f64, usize) { [INFO] [stdout] | ^^^ help: convert the identifier to snake case: `cdf` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `CDF` should have a snake case name [INFO] [stdout] --> src/main.rs:647:78 [INFO] [stdout] | [INFO] [stdout] 647 | fn generate_transfers(n_transfers: usize, contemporaneity: &Vec>, CDF: &Vec, depths: &Vec, rng: &mut StdRng) -> Vec<... [INFO] [stdout] | ^^^ help: convert the identifier to snake case: `cdf` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `A_index` should have a snake case name [INFO] [stdout] --> src/main.rs:729:9 [INFO] [stdout] | [INFO] [stdout] 729 | let A_index = first_species; [INFO] [stdout] | ^^^^^^^ help: convert the identifier to snake case: `a_index` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `B_index` should have a snake case name [INFO] [stdout] --> src/main.rs:730:9 [INFO] [stdout] | [INFO] [stdout] 730 | let B_index = second_species; [INFO] [stdout] | ^^^^^^^ help: convert the identifier to snake case: `b_index` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `FA_index` should have a snake case name [INFO] [stdout] --> src/main.rs:731:9 [INFO] [stdout] | [INFO] [stdout] 731 | let FA_index = flat_tree[A_index].parent.unwrap(); [INFO] [stdout] | ^^^^^^^^ help: convert the identifier to snake case: `fa_index` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `FB_index` should have a snake case name [INFO] [stdout] --> src/main.rs:732:9 [INFO] [stdout] | [INFO] [stdout] 732 | let FB_index = flat_tree[B_index].parent.unwrap(); [INFO] [stdout] | ^^^^^^^^ help: convert the identifier to snake case: `fb_index` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `SB_index` should have a snake case name [INFO] [stdout] --> src/main.rs:733:9 [INFO] [stdout] | [INFO] [stdout] 733 | let SB_index; [INFO] [stdout] | ^^^^^^^^ help: convert the identifier to snake case: `sb_index` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `FFB_index_opt` should have a snake case name [INFO] [stdout] --> src/main.rs:738:9 [INFO] [stdout] | [INFO] [stdout] 738 | let FFB_index_opt = flat_tree[FB_index].parent; [INFO] [stdout] | ^^^^^^^^^^^^^ help: convert the identifier to snake case: `ffb_index_opt` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `FFB_index` should have a snake case name [INFO] [stdout] --> src/main.rs:769:21 [INFO] [stdout] | [INFO] [stdout] 769 | if let Some(FFB_index) = FFB_index_opt { [INFO] [stdout] | ^^^^^^^^^ help: convert the identifier to snake case: `ffb_index` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 20 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 39.87s [INFO] running `Command { std: "docker" "inspect" "203b88376828286640589f1ca934472e88b787dc23179402a5eebe2fad853f71", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "203b88376828286640589f1ca934472e88b787dc23179402a5eebe2fad853f71", kill_on_drop: false }` [INFO] [stdout] 203b88376828286640589f1ca934472e88b787dc23179402a5eebe2fad853f71 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:96c0aa5895ecf336b730ef27bcdde6e21027415df19888aad3cf1448e5d65d90" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2024-09-05" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 4e3958fbc9c1897087b2a561ebfaaa991e0ef83a9bbcff16605461f244fa1b20 [INFO] running `Command { std: "docker" "start" "-a" "4e3958fbc9c1897087b2a561ebfaaa991e0ef83a9bbcff16605461f244fa1b20", kill_on_drop: false }` [INFO] [stderr] Compiling gene_transfer_script v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: variable `number_of_trees` is assigned to, but never used [INFO] [stdout] --> src/main.rs:959:13 [INFO] [stdout] | [INFO] [stdout] 959 | let mut number_of_trees = 0; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: consider using `_number_of_trees` instead [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `duration` [INFO] [stdout] --> src/main.rs:993:9 [INFO] [stdout] | [INFO] [stdout] 993 | let duration = start.elapsed(); [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_duration` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `e` [INFO] [stdout] --> src/main.rs:964:78 [INFO] [stdout] | [INFO] [stdout] 964 | let pairs = NewickParser::parse(Rule::newick, &tree).unwrap_or_else(|e| panic!("fail")); [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_e` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `print_flat_node_table` is never used [INFO] [stdout] --> src/main.rs:80:4 [INFO] [stdout] | [INFO] [stdout] 80 | fn print_flat_node_table(flat_nodes: &[FlatNode]) { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `compare_trees` is never used [INFO] [stdout] --> src/main.rs:112:4 [INFO] [stdout] | [INFO] [stdout] 112 | fn compare_trees(node1: &Node, node2: &Node) -> bool { [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `traverse_tree` is never used [INFO] [stdout] --> src/main.rs:139:4 [INFO] [stdout] | [INFO] [stdout] 139 | fn traverse_tree(node: &Node) { [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `total_length_of_flat_tree` is never used [INFO] [stdout] --> src/main.rs:154:4 [INFO] [stdout] | [INFO] [stdout] 154 | fn total_length_of_flat_tree(flat_tree: &[FlatNode]) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `tree_length` is never used [INFO] [stdout] --> src/main.rs:302:4 [INFO] [stdout] | [INFO] [stdout] 302 | fn tree_length(flat_tree: &Vec) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `make_CDF` should have a snake case name [INFO] [stdout] --> src/main.rs:552:4 [INFO] [stdout] | [INFO] [stdout] 552 | fn make_CDF(intervals: Vec, number_of_species: Vec) -> Vec { [INFO] [stdout] | ^^^^^^^^ help: convert the identifier to snake case: `make_cdf` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_snake_case)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `CDF` should have a snake case name [INFO] [stdout] --> src/main.rs:571:13 [INFO] [stdout] | [INFO] [stdout] 571 | let mut CDF: Vec = Vec::new(); [INFO] [stdout] | ^^^ help: convert the identifier to snake case: `cdf` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `choose_from_CDF` should have a snake case name [INFO] [stdout] --> src/main.rs:582:4 [INFO] [stdout] | [INFO] [stdout] 582 | fn choose_from_CDF(CDF: &Vec, depths: &Vec, rng: &mut StdRng) -> (f64, usize) { [INFO] [stdout] | ^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `choose_from_cdf` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `CDF` should have a snake case name [INFO] [stdout] --> src/main.rs:582:20 [INFO] [stdout] | [INFO] [stdout] 582 | fn choose_from_CDF(CDF: &Vec, depths: &Vec, rng: &mut StdRng) -> (f64, usize) { [INFO] [stdout] | ^^^ help: convert the identifier to snake case: `cdf` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `CDF` should have a snake case name [INFO] [stdout] --> src/main.rs:647:78 [INFO] [stdout] | [INFO] [stdout] 647 | fn generate_transfers(n_transfers: usize, contemporaneity: &Vec>, CDF: &Vec, depths: &Vec, rng: &mut StdRng) -> Vec<... [INFO] [stdout] | ^^^ help: convert the identifier to snake case: `cdf` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `A_index` should have a snake case name [INFO] [stdout] --> src/main.rs:729:9 [INFO] [stdout] | [INFO] [stdout] 729 | let A_index = first_species; [INFO] [stdout] | ^^^^^^^ help: convert the identifier to snake case: `a_index` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `B_index` should have a snake case name [INFO] [stdout] --> src/main.rs:730:9 [INFO] [stdout] | [INFO] [stdout] 730 | let B_index = second_species; [INFO] [stdout] | ^^^^^^^ help: convert the identifier to snake case: `b_index` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `FA_index` should have a snake case name [INFO] [stdout] --> src/main.rs:731:9 [INFO] [stdout] | [INFO] [stdout] 731 | let FA_index = flat_tree[A_index].parent.unwrap(); [INFO] [stdout] | ^^^^^^^^ help: convert the identifier to snake case: `fa_index` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `FB_index` should have a snake case name [INFO] [stdout] --> src/main.rs:732:9 [INFO] [stdout] | [INFO] [stdout] 732 | let FB_index = flat_tree[B_index].parent.unwrap(); [INFO] [stdout] | ^^^^^^^^ help: convert the identifier to snake case: `fb_index` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `SB_index` should have a snake case name [INFO] [stdout] --> src/main.rs:733:9 [INFO] [stdout] | [INFO] [stdout] 733 | let SB_index; [INFO] [stdout] | ^^^^^^^^ help: convert the identifier to snake case: `sb_index` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `FFB_index_opt` should have a snake case name [INFO] [stdout] --> src/main.rs:738:9 [INFO] [stdout] | [INFO] [stdout] 738 | let FFB_index_opt = flat_tree[FB_index].parent; [INFO] [stdout] | ^^^^^^^^^^^^^ help: convert the identifier to snake case: `ffb_index_opt` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `FFB_index` should have a snake case name [INFO] [stdout] --> src/main.rs:769:21 [INFO] [stdout] | [INFO] [stdout] 769 | if let Some(FFB_index) = FFB_index_opt { [INFO] [stdout] | ^^^^^^^^^ help: convert the identifier to snake case: `ffb_index` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 20 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.51s [INFO] running `Command { std: "docker" "inspect" "4e3958fbc9c1897087b2a561ebfaaa991e0ef83a9bbcff16605461f244fa1b20", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4e3958fbc9c1897087b2a561ebfaaa991e0ef83a9bbcff16605461f244fa1b20", kill_on_drop: false }` [INFO] [stdout] 4e3958fbc9c1897087b2a561ebfaaa991e0ef83a9bbcff16605461f244fa1b20 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:96c0aa5895ecf336b730ef27bcdde6e21027415df19888aad3cf1448e5d65d90" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2024-09-05" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] a8f93d236969bf625e536cee5f930e2263c41466da11e6118ee3508804a13c3b [INFO] running `Command { std: "docker" "start" "-a" "a8f93d236969bf625e536cee5f930e2263c41466da11e6118ee3508804a13c3b", kill_on_drop: false }` [INFO] [stderr] warning: variable `number_of_trees` is assigned to, but never used [INFO] [stderr] --> src/main.rs:959:13 [INFO] [stderr] | [INFO] [stderr] 959 | let mut number_of_trees = 0; [INFO] [stderr] | ^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: consider using `_number_of_trees` instead [INFO] [stderr] = note: `#[warn(unused_variables)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `duration` [INFO] [stderr] --> src/main.rs:993:9 [INFO] [stderr] | [INFO] [stderr] 993 | let duration = start.elapsed(); [INFO] [stderr] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_duration` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `e` [INFO] [stderr] --> src/main.rs:964:78 [INFO] [stderr] | [INFO] [stderr] 964 | let pairs = NewickParser::parse(Rule::newick, &tree).unwrap_or_else(|e| panic!("fail")); [INFO] [stderr] | ^ help: if this is intentional, prefix it with an underscore: `_e` [INFO] [stderr] [INFO] [stderr] warning: function `print_flat_node_table` is never used [INFO] [stderr] --> src/main.rs:80:4 [INFO] [stderr] | [INFO] [stderr] 80 | fn print_flat_node_table(flat_nodes: &[FlatNode]) { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] [INFO] [stderr] warning: function `compare_trees` is never used [INFO] [stderr] --> src/main.rs:112:4 [INFO] [stderr] | [INFO] [stderr] 112 | fn compare_trees(node1: &Node, node2: &Node) -> bool { [INFO] [stderr] | ^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: function `traverse_tree` is never used [INFO] [stderr] --> src/main.rs:139:4 [INFO] [stderr] | [INFO] [stderr] 139 | fn traverse_tree(node: &Node) { [INFO] [stderr] | ^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: function `total_length_of_flat_tree` is never used [INFO] [stderr] --> src/main.rs:154:4 [INFO] [stderr] | [INFO] [stderr] 154 | fn total_length_of_flat_tree(flat_tree: &[FlatNode]) -> f64 { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: function `tree_length` is never used [INFO] [stderr] --> src/main.rs:302:4 [INFO] [stderr] | [INFO] [stderr] 302 | fn tree_length(flat_tree: &Vec) -> f64 { [INFO] [stderr] | ^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: function `make_CDF` should have a snake case name [INFO] [stderr] --> src/main.rs:552:4 [INFO] [stderr] | [INFO] [stderr] 552 | fn make_CDF(intervals: Vec, number_of_species: Vec) -> Vec { [INFO] [stderr] | ^^^^^^^^ help: convert the identifier to snake case: `make_cdf` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(non_snake_case)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable `CDF` should have a snake case name [INFO] [stderr] --> src/main.rs:571:13 [INFO] [stderr] | [INFO] [stderr] 571 | let mut CDF: Vec = Vec::new(); [INFO] [stderr] | ^^^ help: convert the identifier to snake case: `cdf` [INFO] [stderr] [INFO] [stderr] warning: function `choose_from_CDF` should have a snake case name [INFO] [stderr] --> src/main.rs:582:4 [INFO] [stderr] | [INFO] [stderr] 582 | fn choose_from_CDF(CDF: &Vec, depths: &Vec, rng: &mut StdRng) -> (f64, usize) { [INFO] [stderr] | ^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `choose_from_cdf` [INFO] [stderr] [INFO] [stderr] warning: variable `CDF` should have a snake case name [INFO] [stderr] --> src/main.rs:582:20 [INFO] [stderr] | [INFO] [stderr] 582 | fn choose_from_CDF(CDF: &Vec, depths: &Vec, rng: &mut StdRng) -> (f64, usize) { [INFO] [stderr] | ^^^ help: convert the identifier to snake case: `cdf` [INFO] [stderr] [INFO] [stderr] warning: variable `CDF` should have a snake case name [INFO] [stderr] --> src/main.rs:647:78 [INFO] [stderr] | [INFO] [stderr] 647 | fn generate_transfers(n_transfers: usize, contemporaneity: &Vec>, CDF: &Vec, depths: &Vec, rng: &mut StdRng) -> Vec<... [INFO] [stderr] | ^^^ help: convert the identifier to snake case: `cdf` [INFO] [stderr] [INFO] [stderr] warning: variable `A_index` should have a snake case name [INFO] [stderr] --> src/main.rs:729:9 [INFO] [stderr] | [INFO] [stderr] 729 | let A_index = first_species; [INFO] [stderr] | ^^^^^^^ help: convert the identifier to snake case: `a_index` [INFO] [stderr] [INFO] [stderr] warning: variable `B_index` should have a snake case name [INFO] [stderr] --> src/main.rs:730:9 [INFO] [stderr] | [INFO] [stderr] 730 | let B_index = second_species; [INFO] [stderr] | ^^^^^^^ help: convert the identifier to snake case: `b_index` [INFO] [stderr] [INFO] [stderr] warning: variable `FA_index` should have a snake case name [INFO] [stderr] --> src/main.rs:731:9 [INFO] [stderr] | [INFO] [stderr] 731 | let FA_index = flat_tree[A_index].parent.unwrap(); [INFO] [stderr] | ^^^^^^^^ help: convert the identifier to snake case: `fa_index` [INFO] [stderr] [INFO] [stderr] warning: variable `FB_index` should have a snake case name [INFO] [stderr] --> src/main.rs:732:9 [INFO] [stderr] | [INFO] [stderr] 732 | let FB_index = flat_tree[B_index].parent.unwrap(); [INFO] [stderr] | ^^^^^^^^ help: convert the identifier to snake case: `fb_index` [INFO] [stderr] [INFO] [stderr] warning: variable `SB_index` should have a snake case name [INFO] [stderr] --> src/main.rs:733:9 [INFO] [stderr] | [INFO] [stderr] 733 | let SB_index; [INFO] [stderr] | ^^^^^^^^ help: convert the identifier to snake case: `sb_index` [INFO] [stderr] [INFO] [stderr] warning: variable `FFB_index_opt` should have a snake case name [INFO] [stderr] --> src/main.rs:738:9 [INFO] [stderr] | [INFO] [stderr] 738 | let FFB_index_opt = flat_tree[FB_index].parent; [INFO] [stderr] | ^^^^^^^^^^^^^ help: convert the identifier to snake case: `ffb_index_opt` [INFO] [stderr] [INFO] [stderr] warning: variable `FFB_index` should have a snake case name [INFO] [stderr] --> src/main.rs:769:21 [INFO] [stderr] | [INFO] [stderr] 769 | if let Some(FFB_index) = FFB_index_opt { [INFO] [stderr] | ^^^^^^^^^ help: convert the identifier to snake case: `ffb_index` [INFO] [stderr] [INFO] [stderr] warning: `gene_transfer_script` (bin "gene_transfer_script" test) generated 20 warnings [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.04s [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/debug/deps/gene_transfer_script-1bed84aea40e4dca) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "a8f93d236969bf625e536cee5f930e2263c41466da11e6118ee3508804a13c3b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a8f93d236969bf625e536cee5f930e2263c41466da11e6118ee3508804a13c3b", kill_on_drop: false }` [INFO] [stdout] a8f93d236969bf625e536cee5f930e2263c41466da11e6118ee3508804a13c3b