[INFO] cloning repository https://github.com/legaultmarc/genepa-rs
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/legaultmarc/genepa-rs" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Flegaultmarc%2Fgenepa-rs", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Flegaultmarc%2Fgenepa-rs'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 4ee2025b9265ff8ae4ea21980678cb8a011f421e
[INFO] documenting legaultmarc/genepa-rs/4ee2025b9265ff8ae4ea21980678cb8a011f421e against 1.76.0 for beta-1.77-rustdoc-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Flegaultmarc%2Fgenepa-rs" "/workspace/builds/worker-4-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc1/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/legaultmarc/genepa-rs on toolchain 1.76.0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.76.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/legaultmarc/genepa-rs
[INFO] finished tweaking git repo https://github.com/legaultmarc/genepa-rs
[INFO] tweaked toml for git repo https://github.com/legaultmarc/genepa-rs written to /workspace/builds/worker-4-tc1/source/Cargo.toml
[INFO] crate git repo https://github.com/legaultmarc/genepa-rs already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.76.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+1.76.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 4b507ff66725d3e4cc6231eb697bf1219b7e589ce968846acb4feebaadf311ab
[INFO] running `Command { std: "docker" "start" "-a" "4b507ff66725d3e4cc6231eb697bf1219b7e589ce968846acb4feebaadf311ab", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "4b507ff66725d3e4cc6231eb697bf1219b7e589ce968846acb4feebaadf311ab", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4b507ff66725d3e4cc6231eb697bf1219b7e589ce968846acb4feebaadf311ab", kill_on_drop: false }`
[INFO] [stdout] 4b507ff66725d3e4cc6231eb697bf1219b7e589ce968846acb4feebaadf311ab
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+1.76.0" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] db267aa085b5a056ae61cf332b7377c42f960ce591a9936ebc277c132ac208a4
[INFO] running `Command { std: "docker" "start" "-a" "db267aa085b5a056ae61cf332b7377c42f960ce591a9936ebc277c132ac208a4", kill_on_drop: false }`
[INFO] [stderr]    Compiling num-traits v0.2.6
[INFO] [stderr]    Compiling matrixmultiply v0.1.15
[INFO] [stderr]    Compiling num-complex v0.2.1
[INFO] [stderr]     Checking either v1.5.2
[INFO] [stderr]    Compiling ndarray v0.12.1
[INFO] [stderr]     Checking rawpointer v0.1.0
[INFO] [stderr]     Checking itertools v0.7.11
[INFO] [stderr]  Documenting genepa_rs v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Checking genepa_rs v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `std::f32::NAN`
[INFO] [stdout]  --> src/c_api.rs:1:5
[INFO] [stdout]   |
[INFO] [stdout] 1 | use std::f32::NAN;
[INFO] [stdout]   |     ^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around block return value
[INFO] [stdout]    --> src/plink.rs:370:9
[INFO] [stdout]     |
[INFO] [stdout] 370 | /         (
[INFO] [stdout] 371 | |             first_3_bytes[0] == 0x6c &&
[INFO] [stdout]     | |____________^
[INFO] [stdout] 372 |               first_3_bytes[1] == 0x1b &&
[INFO] [stdout] 373 |               first_3_bytes[2] == 0x01
[INFO] [stdout]     |  _____________________________________^
[INFO] [stdout] 374 | |         )
[INFO] [stdout]     | |_________^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_parens)]` on by default
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]     |
[INFO] [stdout] 370 ~         first_3_bytes[0] == 0x6c &&
[INFO] [stdout] 371 |             first_3_bytes[1] == 0x1b &&
[INFO] [stdout] 372 ~             first_3_bytes[2] == 0x01
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around block return value
[INFO] [stdout]    --> src/plink.rs:370:9
[INFO] [stdout]     |
[INFO] [stdout] 370 | /         (
[INFO] [stdout] 371 | |             first_3_bytes[0] == 0x6c &&
[INFO] [stdout]     | |____________^
[INFO] [stdout] 372 |               first_3_bytes[1] == 0x1b &&
[INFO] [stdout] 373 |               first_3_bytes[2] == 0x01
[INFO] [stdout]     |  _____________________________________^
[INFO] [stdout] 374 | |         )
[INFO] [stdout]     | |_________^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_parens)]` on by default
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]     |
[INFO] [stdout] 370 ~         first_3_bytes[0] == 0x6c &&
[INFO] [stdout] 371 |             first_3_bytes[1] == 0x1b &&
[INFO] [stdout] 372 ~             first_3_bytes[2] == 0x01
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `geno_arr_others`
[INFO] [stdout]   --> src/utils.rs:20:9
[INFO] [stdout]    |
[INFO] [stdout] 20 |     let geno_arr_others = ArrayViewMut::from_shape(
[INFO] [stdout]    |         ^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_geno_arr_others`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `r2`
[INFO] [stdout]  --> src/utils.rs:5:74
[INFO] [stdout]   |
[INFO] [stdout] 5 | pub fn compute_ld(mut g: Genotypes, mut other_genotypes: Vec<Genotypes>, r2: bool)
[INFO] [stdout]   |                                                                          ^^ help: if this is intentional, prefix it with an underscore: `_r2`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused return value of `Box::<T>::from_raw` that must be used
[INFO] [stdout]   --> src/c_api.rs:44:9
[INFO] [stdout]    |
[INFO] [stdout] 44 |         Box::from_raw(ptr);
[INFO] [stdout]    |         ^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: call `drop(Box::from_raw(ptr))` if you intend to drop the `Box`
[INFO] [stdout]    = note: `#[warn(unused_must_use)]` on by default
[INFO] [stdout] help: use `let _ = ...` to ignore the resulting value
[INFO] [stdout]    |
[INFO] [stdout] 44 |         let _ = Box::from_raw(ptr);
[INFO] [stdout]    |         +++++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused return value of `Box::<T>::from_raw` that must be used
[INFO] [stdout]    --> src/c_api.rs:123:9
[INFO] [stdout]     |
[INFO] [stdout] 123 |         Box::from_raw(ptr);
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: call `drop(Box::from_raw(ptr))` if you intend to drop the `Box`
[INFO] [stdout] help: use `let _ = ...` to ignore the resulting value
[INFO] [stdout]     |
[INFO] [stdout] 123 |         let _ = Box::from_raw(ptr);
[INFO] [stdout]     |         +++++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused return value of `Box::<T>::from_raw` that must be used
[INFO] [stdout]    --> src/c_api.rs:132:9
[INFO] [stdout]     |
[INFO] [stdout] 132 |         Box::from_raw(ptr);
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: call `drop(Box::from_raw(ptr))` if you intend to drop the `Box`
[INFO] [stdout] help: use `let _ = ...` to ignore the resulting value
[INFO] [stdout]     |
[INFO] [stdout] 132 |         let _ = Box::from_raw(ptr);
[INFO] [stdout]     |         +++++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused return value of `Box::<T>::from_raw` that must be used
[INFO] [stdout]    --> src/c_api.rs:178:9
[INFO] [stdout]     |
[INFO] [stdout] 178 |         Box::from_raw(ptr);
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: call `drop(Box::from_raw(ptr))` if you intend to drop the `Box`
[INFO] [stdout] help: use `let _ = ...` to ignore the resulting value
[INFO] [stdout]     |
[INFO] [stdout] 178 |         let _ = Box::from_raw(ptr);
[INFO] [stdout]     |         +++++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 8 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around block return value
[INFO] [stdout]    --> src/plink.rs:370:9
[INFO] [stdout]     |
[INFO] [stdout] 370 | /         (
[INFO] [stdout] 371 | |             first_3_bytes[0] == 0x6c &&
[INFO] [stdout]     | |____________^
[INFO] [stdout] 372 |               first_3_bytes[1] == 0x1b &&
[INFO] [stdout] 373 |               first_3_bytes[2] == 0x01
[INFO] [stdout]     |  _____________________________________^
[INFO] [stdout] 374 | |         )
[INFO] [stdout]     | |_________^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_parens)]` on by default
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]     |
[INFO] [stdout] 370 ~         first_3_bytes[0] == 0x6c &&
[INFO] [stdout] 371 |             first_3_bytes[1] == 0x1b &&
[INFO] [stdout] 372 ~             first_3_bytes[2] == 0x01
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 2.44s
[INFO] [stderr]    Generated /opt/rustwide/target/doc/rsgeneparselib/index.html
[INFO] [stderr]    Generated /opt/rustwide/target/doc/genepa_rs/index.html
[INFO] running `Command { std: "docker" "inspect" "db267aa085b5a056ae61cf332b7377c42f960ce591a9936ebc277c132ac208a4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "db267aa085b5a056ae61cf332b7377c42f960ce591a9936ebc277c132ac208a4", kill_on_drop: false }`
[INFO] [stdout] db267aa085b5a056ae61cf332b7377c42f960ce591a9936ebc277c132ac208a4
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "DOCS_RS=1" "-e" "RUSTC_BOOTSTRAP=1" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+1.76.0" "rustdoc" "--lib" "-Zrustdoc-map" "-Z" "unstable-options" "--config" "build.rustdocflags=[\"-Z\", \"unstable-options\", \"--document-private-items\"]" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 6337deb94ce68717067a395214e7d3f549f0ae484dcb51a690891397132349bf
[INFO] running `Command { std: "docker" "start" "-a" "6337deb94ce68717067a395214e7d3f549f0ae484dcb51a690891397132349bf", kill_on_drop: false }`
[INFO] [stderr]  Documenting genepa_rs v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unnecessary parentheses around block return value
[INFO] [stdout]    --> src/plink.rs:370:9
[INFO] [stdout]     |
[INFO] [stdout] 370 | /         (
[INFO] [stdout] 371 | |             first_3_bytes[0] == 0x6c &&
[INFO] [stdout]     | |____________^
[INFO] [stdout] 372 |               first_3_bytes[1] == 0x1b &&
[INFO] [stdout] 373 |               first_3_bytes[2] == 0x01
[INFO] [stdout]     |  _____________________________________^
[INFO] [stdout] 374 | |         )
[INFO] [stdout]     | |_________^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_parens)]` on by default
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]     |
[INFO] [stdout] 370 ~         first_3_bytes[0] == 0x6c &&
[INFO] [stdout] 371 |             first_3_bytes[1] == 0x1b &&
[INFO] [stdout] 372 ~             first_3_bytes[2] == 0x01
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 0.32s
[INFO] [stderr]    Generated /opt/rustwide/target/doc/rsgeneparselib/index.html
[INFO] running `Command { std: "docker" "inspect" "6337deb94ce68717067a395214e7d3f549f0ae484dcb51a690891397132349bf", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "6337deb94ce68717067a395214e7d3f549f0ae484dcb51a690891397132349bf", kill_on_drop: false }`
[INFO] [stdout] 6337deb94ce68717067a395214e7d3f549f0ae484dcb51a690891397132349bf
