[INFO] fetching crate omics-tools 0.1.0...
[INFO] testing omics-tools-0.1.0 against 1.76.0 for beta-1.77-1
[INFO] extracting crate omics-tools 0.1.0 into /workspace/builds/worker-2-tc1/source
[INFO] validating manifest of crates.io crate omics-tools 0.1.0 on toolchain 1.76.0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.76.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate omics-tools 0.1.0
[INFO] finished tweaking crates.io crate omics-tools 0.1.0
[INFO] tweaked toml for crates.io crate omics-tools 0.1.0 written to /workspace/builds/worker-2-tc1/source/Cargo.toml
[INFO] crate crates.io crate omics-tools 0.1.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.76.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded bio-types v0.7.0
[INFO] [stderr]   Downloaded exitcode v1.1.2
[INFO] [stderr]   Downloaded thread_local v0.3.4
[INFO] [stderr]   Downloaded termion v1.5.5
[INFO] [stderr]   Downloaded either v1.6.0
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[INFO] [stderr]   Downloaded chrono v0.4.15
[INFO] [stderr]   Downloaded bzip2-sys v0.1.9+1.0.8
[INFO] [stderr]   Downloaded hts-sys v1.10.3
[INFO] [stderr]   Downloaded lzma-sys v0.1.16
[INFO] [stderr]   Downloaded openssl-src v111.10.2+1.1.1g
[INFO] [stderr]   Downloaded rust-htslib v0.32.0
[INFO] [stderr]   Downloaded curl-sys v0.4.36+curl-7.71.1
[INFO] [stderr]   Downloaded syn v1.0.40
[INFO] [stderr]   Downloaded rayon v1.4.0
[INFO] [stderr]   Downloaded stderrlog v0.4.3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+1.76.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 5de117db53be0c9acc6db9259a12dfd3275e745197fdc079d70718e430c65ea9
[INFO] running `Command { std: "docker" "start" "-a" "5de117db53be0c9acc6db9259a12dfd3275e745197fdc079d70718e430c65ea9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "5de117db53be0c9acc6db9259a12dfd3275e745197fdc079d70718e430c65ea9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5de117db53be0c9acc6db9259a12dfd3275e745197fdc079d70718e430c65ea9", kill_on_drop: false }`
[INFO] [stdout] 5de117db53be0c9acc6db9259a12dfd3275e745197fdc079d70718e430c65ea9
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+1.76.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] da059231760363c8aeee91df40f5d0f97478db6b20de250a1394403bb19b4ec5
[INFO] running `Command { std: "docker" "start" "-a" "da059231760363c8aeee91df40f5d0f97478db6b20de250a1394403bb19b4ec5", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.77
[INFO] [stderr]    Compiling autocfg v1.0.1
[INFO] [stderr]    Compiling pkg-config v0.3.18
[INFO] [stderr]    Compiling proc-macro2 v1.0.21
[INFO] [stderr]    Compiling unicode-xid v0.2.1
[INFO] [stderr]    Compiling lazy_static v1.4.0
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[INFO] [stderr]    Compiling version_check v0.9.2
[INFO] [stderr]    Compiling maybe-uninit v2.0.0
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling memchr v2.3.3
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling crossbeam-utils v0.7.2
[INFO] [stderr]    Compiling memoffset v0.5.5
[INFO] [stderr]    Compiling num-traits v0.2.12
[INFO] [stderr]    Compiling crossbeam-epoch v0.8.2
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling num-integer v0.1.43
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[INFO] [stderr]    Compiling quote v1.0.7
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
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[INFO] [stderr]    Compiling cc v1.0.59
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[INFO] [stderr]    Compiling openssl-sys v0.9.58
[INFO] [stderr]    Compiling bzip2-sys v0.1.9+1.0.8
[INFO] [stderr]    Compiling curl-sys v0.4.36+curl-7.71.1
[INFO] [stderr]    Compiling lzma-sys v0.1.16
[INFO] [stderr]    Compiling hts-sys v1.10.3
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[INFO] [stderr]    Compiling unreachable v1.0.0
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[INFO] [stderr]    Compiling textwrap v0.11.0
[INFO] [stderr]    Compiling idna v0.2.0
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[INFO] [stderr]    Compiling time v0.1.44
[INFO] [stderr]    Compiling num_cpus v1.13.0
[INFO] [stderr]    Compiling rayon v1.4.0
[INFO] [stderr]    Compiling lazy_static v0.2.11
[INFO] [stderr]    Compiling ansi_term v0.11.0
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling strsim v0.8.0
[INFO] [stderr]    Compiling percent-encoding v2.1.0
[INFO] [stderr]    Compiling clap v2.33.3
[INFO] [stderr]    Compiling url v2.1.1
[INFO] [stderr]    Compiling thread_local v0.3.4
[INFO] [stderr]    Compiling regex v1.3.9
[INFO] [stderr]    Compiling chrono v0.4.15
[INFO] [stderr]    Compiling derive-new v0.5.8
[INFO] [stderr]    Compiling thiserror-impl v1.0.20
[INFO] [stderr]    Compiling structopt-derive v0.4.10
[INFO] [stderr]    Compiling termcolor v1.1.0
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling ieee754 v0.2.6
[INFO] [stderr]    Compiling either v1.6.0
[INFO] [stderr]    Compiling stderrlog v0.4.3
[INFO] [stderr]    Compiling thiserror v1.0.20
[INFO] [stderr]    Compiling exitcode v1.1.2
[INFO] [stderr]    Compiling structopt v0.3.17
[INFO] [stderr]    Compiling bio-types v0.7.0
[INFO] [stderr]    Compiling rust-htslib v0.32.0
[INFO] [stderr]    Compiling omics-tools v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused `#[macro_use]` import
[INFO] [stdout]  --> src/bin/bam-util.rs:1:1
[INFO] [stdout]   |
[INFO] [stdout] 1 | #[macro_use]
[INFO] [stdout]   | ^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `quiet`, `verbose`, and `ts` are never read
[INFO] [stdout]   --> src/bin/bam-util.rs:15:3
[INFO] [stdout]    |
[INFO] [stdout] 14 | struct Opt {
[INFO] [stdout]    |        --- fields in this struct
[INFO] [stdout] 15 |   quiet: bool,
[INFO] [stdout]    |   ^^^^^
[INFO] [stdout] 16 |   verbose: usize,
[INFO] [stdout]    |   ^^^^^^^
[INFO] [stdout] 17 |   ts: Option<stderrlog::Timestamp>,
[INFO] [stdout]    |   ^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `Opt` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1m 31s
[INFO] [stdout] warning: 2 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "da059231760363c8aeee91df40f5d0f97478db6b20de250a1394403bb19b4ec5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "da059231760363c8aeee91df40f5d0f97478db6b20de250a1394403bb19b4ec5", kill_on_drop: false }`
[INFO] [stdout] da059231760363c8aeee91df40f5d0f97478db6b20de250a1394403bb19b4ec5
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+1.76.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 49dea7a46ab4273805b9d700d38452010cb88ab2ca0aa7b9bb29d1ef31df6477
[INFO] running `Command { std: "docker" "start" "-a" "49dea7a46ab4273805b9d700d38452010cb88ab2ca0aa7b9bb29d1ef31df6477", kill_on_drop: false }`
[INFO] [stderr]    Compiling omics-tools v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused `#[macro_use]` import
[INFO] [stdout]  --> src/bin/bam-util.rs:1:1
[INFO] [stdout]   |
[INFO] [stdout] 1 | #[macro_use]
[INFO] [stdout]   | ^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `quiet`, `verbose`, and `ts` are never read
[INFO] [stdout]   --> src/bin/bam-util.rs:15:3
[INFO] [stdout]    |
[INFO] [stdout] 14 | struct Opt {
[INFO] [stdout]    |        --- fields in this struct
[INFO] [stdout] 15 |   quiet: bool,
[INFO] [stdout]    |   ^^^^^
[INFO] [stdout] 16 |   verbose: usize,
[INFO] [stdout]    |   ^^^^^^^
[INFO] [stdout] 17 |   ts: Option<stderrlog::Timestamp>,
[INFO] [stdout]    |   ^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `Opt` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 2 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.69s
[INFO] running `Command { std: "docker" "inspect" "49dea7a46ab4273805b9d700d38452010cb88ab2ca0aa7b9bb29d1ef31df6477", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "49dea7a46ab4273805b9d700d38452010cb88ab2ca0aa7b9bb29d1ef31df6477", kill_on_drop: false }`
[INFO] [stdout] 49dea7a46ab4273805b9d700d38452010cb88ab2ca0aa7b9bb29d1ef31df6477
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+1.76.0" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] bde53ac2fcf243b453d37c4587e16146a7290fa8e59e938d99071b0b3fec8055
[INFO] running `Command { std: "docker" "start" "-a" "bde53ac2fcf243b453d37c4587e16146a7290fa8e59e938d99071b0b3fec8055", kill_on_drop: false }`
[INFO] [stderr] warning: unused `#[macro_use]` import
[INFO] [stderr]  --> src/bin/bam-util.rs:1:1
[INFO] [stderr]   |
[INFO] [stderr] 1 | #[macro_use]
[INFO] [stderr]   | ^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: fields `quiet`, `verbose`, and `ts` are never read
[INFO] [stderr]   --> src/bin/bam-util.rs:15:3
[INFO] [stderr]    |
[INFO] [stderr] 14 | struct Opt {
[INFO] [stderr]    |        --- fields in this struct
[INFO] [stderr] 15 |   quiet: bool,
[INFO] [stderr]    |   ^^^^^
[INFO] [stderr] 16 |   verbose: usize,
[INFO] [stderr]    |   ^^^^^^^
[INFO] [stderr] 17 |   ts: Option<stderrlog::Timestamp>,
[INFO] [stderr]    |   ^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `Opt` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stderr]    = note: `#[warn(dead_code)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: `omics-tools` (bin "bam-util" test) generated 2 warnings
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.09s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/omics_tools-a9e090402bfaae30)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/bin/bam-util.rs (/opt/rustwide/target/debug/deps/bam_util-e6af8945166ad0a2)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests omics-tools
[INFO] [stdout] 
[INFO] [stdout] running 1 test
[INFO] [stdout] test src/bam/cigar.rs - bam::cigar::remove_whitespace (line 21) ... FAILED
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout] 
[INFO] [stdout] ---- src/bam/cigar.rs - bam::cigar::remove_whitespace (line 21) stdout ----
[INFO] [stdout] error[E0425]: cannot find function `remove_whitespace` in this scope
[INFO] [stdout]  --> src/bam/cigar.rs:22:15
[INFO] [stdout]   |
[INFO] [stdout] 3 | let removed = remove_whitespace("  each(S) && all(M)");
[INFO] [stdout]   |               ^^^^^^^^^^^^^^^^^ not found in this scope
[INFO] [stdout]   |
[INFO] [stdout] help: consider importing this function
[INFO] [stdout]   |
[INFO] [stdout] 2 + use omics_tools::bam::cigar::remove_whitespace;
[INFO] [stdout]   |
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to 1 previous error
[INFO] [stdout] 
[INFO] [stdout] For more information about this error, try `rustc --explain E0425`.
[INFO] [stdout] Couldn't compile the test.
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout]     src/bam/cigar.rs - bam::cigar::remove_whitespace (line 21)
[INFO] [stdout] 
[INFO] [stdout] test result: FAILED. 0 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.11s
[INFO] [stdout] 
[INFO] [stderr] error: doctest failed, to rerun pass `--doc`
[INFO] running `Command { std: "docker" "inspect" "bde53ac2fcf243b453d37c4587e16146a7290fa8e59e938d99071b0b3fec8055", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "bde53ac2fcf243b453d37c4587e16146a7290fa8e59e938d99071b0b3fec8055", kill_on_drop: false }`
[INFO] [stdout] bde53ac2fcf243b453d37c4587e16146a7290fa8e59e938d99071b0b3fec8055
[INFO] testing omics-tools-0.1.0 against beta-2024-02-10 for beta-1.77-1
[INFO] extracting crate omics-tools 0.1.0 into /workspace/builds/worker-2-tc2/source
[INFO] validating manifest of crates.io crate omics-tools 0.1.0 on toolchain beta-2024-02-10
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2024-02-10" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate omics-tools 0.1.0
[INFO] finished tweaking crates.io crate omics-tools 0.1.0
[INFO] tweaked toml for crates.io crate omics-tools 0.1.0 written to /workspace/builds/worker-2-tc2/source/Cargo.toml
[INFO] crate crates.io crate omics-tools 0.1.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2024-02-10" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2024-02-10" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 7a43d787ddfd44eb63503cb3b529cd23bd92fc03efa45fb50576db6f4ce764b3
[INFO] running `Command { std: "docker" "start" "-a" "7a43d787ddfd44eb63503cb3b529cd23bd92fc03efa45fb50576db6f4ce764b3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "7a43d787ddfd44eb63503cb3b529cd23bd92fc03efa45fb50576db6f4ce764b3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "7a43d787ddfd44eb63503cb3b529cd23bd92fc03efa45fb50576db6f4ce764b3", kill_on_drop: false }`
[INFO] [stdout] 7a43d787ddfd44eb63503cb3b529cd23bd92fc03efa45fb50576db6f4ce764b3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2024-02-10" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] c3bb52a768cd5e7fcb1155f8b2774c869cccf260c6b4d2f2fbd6166340101ca2
[INFO] running `Command { std: "docker" "start" "-a" "c3bb52a768cd5e7fcb1155f8b2774c869cccf260c6b4d2f2fbd6166340101ca2", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.77
[INFO] [stderr]    Compiling autocfg v1.0.1
[INFO] [stderr]    Compiling pkg-config v0.3.18
[INFO] [stderr]    Compiling proc-macro2 v1.0.21
[INFO] [stderr]    Compiling unicode-xid v0.2.1
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling syn v1.0.40
[INFO] [stderr]    Compiling version_check v0.9.2
[INFO] [stderr]    Compiling cfg-if v0.1.10
[INFO] [stderr]    Compiling maybe-uninit v2.0.0
[INFO] [stderr]    Compiling memchr v2.3.3
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling crossbeam-utils v0.7.2
[INFO] [stderr]    Compiling memoffset v0.5.5
[INFO] [stderr]    Compiling crossbeam-epoch v0.8.2
[INFO] [stderr]    Compiling num-traits v0.2.12
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling quote v1.0.7
[INFO] [stderr]    Compiling jobserver v0.1.21
[INFO] [stderr]    Compiling num-integer v0.1.43
[INFO] [stderr]    Compiling rayon-core v1.8.0
[INFO] [stderr]    Compiling cc v1.0.59
[INFO] [stderr]    Compiling glob v0.3.0
[INFO] [stderr]    Compiling serde_derive v1.0.116
[INFO] [stderr]    Compiling scopeguard v1.1.0
[INFO] [stderr]    Compiling tinyvec v0.3.4
[INFO] [stderr]    Compiling serde v1.0.116
[INFO] [stderr]    Compiling bitflags v1.2.1
[INFO] [stderr]    Compiling matches v0.1.8
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[INFO] [stderr]    Compiling openssl-src v111.10.2+1.1.1g
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling atty v0.2.11
[INFO] [stderr]    Compiling aho-corasick v0.7.13
[INFO] [stderr]    Compiling thread_local v1.0.1
[INFO] [stderr]    Compiling log v0.4.11
[INFO] [stderr]    Compiling regex-syntax v0.6.18
[INFO] [stderr]    Compiling void v1.0.2
[INFO] [stderr]    Compiling unicode-width v0.1.8
[INFO] [stderr]    Compiling unicode-segmentation v1.6.0
[INFO] [stderr]    Compiling textwrap v0.11.0
[INFO] [stderr]    Compiling openssl-sys v0.9.58
[INFO] [stderr]    Compiling libz-sys v1.1.2
[INFO] [stderr]    Compiling curl-sys v0.4.36+curl-7.71.1
[INFO] [stderr]    Compiling bzip2-sys v0.1.9+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.16
[INFO] [stderr]    Compiling hts-sys v1.10.3
[INFO] [stderr]    Compiling heck v0.3.1
[INFO] [stderr]    Compiling unreachable v1.0.0
[INFO] [stderr]    Compiling idna v0.2.0
[INFO] [stderr]    Compiling regex v1.3.9
[INFO] [stderr]    Compiling crossbeam-deque v0.7.3
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[INFO] [stderr]    Compiling time v0.1.44
[INFO] [stderr]    Compiling num_cpus v1.13.0
[INFO] [stderr]    Compiling rayon v1.4.0
[INFO] [stderr]    Compiling strsim v0.8.0
[INFO] [stderr]    Compiling percent-encoding v2.1.0
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling lazy_static v0.2.11
[INFO] [stderr]    Compiling ansi_term v0.11.0
[INFO] [stderr]    Compiling thread_local v0.3.4
[INFO] [stderr]    Compiling url v2.1.1
[INFO] [stderr]    Compiling clap v2.33.3
[INFO] [stderr]    Compiling chrono v0.4.15
[INFO] [stderr]    Compiling thiserror-impl v1.0.20
[INFO] [stderr]    Compiling derive-new v0.5.8
[INFO] [stderr]    Compiling structopt-derive v0.4.10
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling either v1.6.0
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling ieee754 v0.2.6
[INFO] [stderr]    Compiling termcolor v1.1.0
[INFO] [stderr]    Compiling thiserror v1.0.20
[INFO] [stderr]    Compiling stderrlog v0.4.3
[INFO] [stderr]    Compiling exitcode v1.1.2
[INFO] [stderr]    Compiling structopt v0.3.17
[INFO] [stderr]    Compiling bio-types v0.7.0
[INFO] [stderr]    Compiling rust-htslib v0.32.0
[INFO] [stderr]    Compiling omics-tools v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused `#[macro_use]` import
[INFO] [stdout]  --> src/bin/bam-util.rs:1:1
[INFO] [stdout]   |
[INFO] [stdout] 1 | #[macro_use]
[INFO] [stdout]   | ^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `quiet`, `verbose`, and `ts` are never read
[INFO] [stdout]   --> src/bin/bam-util.rs:15:3
[INFO] [stdout]    |
[INFO] [stdout] 14 | struct Opt {
[INFO] [stdout]    |        --- fields in this struct
[INFO] [stdout] 15 |   quiet: bool,
[INFO] [stdout]    |   ^^^^^
[INFO] [stdout] 16 |   verbose: usize,
[INFO] [stdout]    |   ^^^^^^^
[INFO] [stdout] 17 |   ts: Option<stderrlog::Timestamp>,
[INFO] [stdout]    |   ^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `Opt` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 2 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1m 49s
[INFO] running `Command { std: "docker" "inspect" "c3bb52a768cd5e7fcb1155f8b2774c869cccf260c6b4d2f2fbd6166340101ca2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c3bb52a768cd5e7fcb1155f8b2774c869cccf260c6b4d2f2fbd6166340101ca2", kill_on_drop: false }`
[INFO] [stdout] c3bb52a768cd5e7fcb1155f8b2774c869cccf260c6b4d2f2fbd6166340101ca2
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2024-02-10" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 653e403cfdb353394cc7a4a447a74db2ea30650b9d3b68394c0dddbcbb0aef3d
[INFO] running `Command { std: "docker" "start" "-a" "653e403cfdb353394cc7a4a447a74db2ea30650b9d3b68394c0dddbcbb0aef3d", kill_on_drop: false }`
[INFO] [stderr]    Compiling omics-tools v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused `#[macro_use]` import
[INFO] [stdout]  --> src/bin/bam-util.rs:1:1
[INFO] [stdout]   |
[INFO] [stdout] 1 | #[macro_use]
[INFO] [stdout]   | ^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `quiet`, `verbose`, and `ts` are never read
[INFO] [stdout]   --> src/bin/bam-util.rs:15:3
[INFO] [stdout]    |
[INFO] [stdout] 14 | struct Opt {
[INFO] [stdout]    |        --- fields in this struct
[INFO] [stdout] 15 |   quiet: bool,
[INFO] [stdout]    |   ^^^^^
[INFO] [stdout] 16 |   verbose: usize,
[INFO] [stdout]    |   ^^^^^^^
[INFO] [stdout] 17 |   ts: Option<stderrlog::Timestamp>,
[INFO] [stdout]    |   ^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `Opt` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 2 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.53s
[INFO] running `Command { std: "docker" "inspect" "653e403cfdb353394cc7a4a447a74db2ea30650b9d3b68394c0dddbcbb0aef3d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "653e403cfdb353394cc7a4a447a74db2ea30650b9d3b68394c0dddbcbb0aef3d", kill_on_drop: false }`
[INFO] [stdout] 653e403cfdb353394cc7a4a447a74db2ea30650b9d3b68394c0dddbcbb0aef3d
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2024-02-10" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] d93eed91950a27abdee52d598a3e4767fe58a2ac91872aedf748148d89a86050
[INFO] running `Command { std: "docker" "start" "-a" "d93eed91950a27abdee52d598a3e4767fe58a2ac91872aedf748148d89a86050", kill_on_drop: false }`
[INFO] [stderr] warning: unused `#[macro_use]` import
[INFO] [stderr]  --> src/bin/bam-util.rs:1:1
[INFO] [stderr]   |
[INFO] [stderr] 1 | #[macro_use]
[INFO] [stderr]   | ^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: fields `quiet`, `verbose`, and `ts` are never read
[INFO] [stderr]   --> src/bin/bam-util.rs:15:3
[INFO] [stderr]    |
[INFO] [stderr] 14 | struct Opt {
[INFO] [stderr]    |        --- fields in this struct
[INFO] [stderr] 15 |   quiet: bool,
[INFO] [stderr]    |   ^^^^^
[INFO] [stderr] 16 |   verbose: usize,
[INFO] [stderr]    |   ^^^^^^^
[INFO] [stderr] 17 |   ts: Option<stderrlog::Timestamp>,
[INFO] [stderr]    |   ^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `Opt` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stderr]    = note: `#[warn(dead_code)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: `omics-tools` (bin "bam-util" test) generated 2 warnings
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.10s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/omics_tools-0eab64a1ecb72c3c)
[INFO] [stderr]      Running unittests src/bin/bam-util.rs (/opt/rustwide/target/debug/deps/bam_util-704e114e207a25e3)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests omics-tools
[INFO] [stdout] 
[INFO] [stdout] running 1 test
[INFO] [stdout] test src/bam/cigar.rs - bam::cigar::remove_whitespace (line 21) ... FAILED
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout] 
[INFO] [stdout] ---- src/bam/cigar.rs - bam::cigar::remove_whitespace (line 21) stdout ----
[INFO] [stdout] error[E0425]: cannot find function `remove_whitespace` in this scope
[INFO] [stdout]  --> src/bam/cigar.rs:22:15
[INFO] [stdout]   |
[INFO] [stdout] 3 | let removed = remove_whitespace("  each(S) && all(M)");
[INFO] [stdout]   |               ^^^^^^^^^^^^^^^^^ not found in this scope
[INFO] [stdout]   |
[INFO] [stdout] help: consider importing this function
[INFO] [stdout]   |
[INFO] [stdout] 2 + use omics_tools::bam::cigar::remove_whitespace;
[INFO] [stdout]   |
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to 1 previous error
[INFO] [stdout] 
[INFO] [stdout] For more information about this error, try `rustc --explain E0425`.
[INFO] [stdout] Couldn't compile the test.
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout]     src/bam/cigar.rs - bam::cigar::remove_whitespace (line 21)
[INFO] [stdout] 
[INFO] [stdout] test result: FAILED. 0 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.08s
[INFO] [stdout] 
[INFO] [stderr] error: doctest failed, to rerun pass `--doc`
[INFO] running `Command { std: "docker" "inspect" "d93eed91950a27abdee52d598a3e4767fe58a2ac91872aedf748148d89a86050", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d93eed91950a27abdee52d598a3e4767fe58a2ac91872aedf748148d89a86050", kill_on_drop: false }`
[INFO] [stdout] d93eed91950a27abdee52d598a3e4767fe58a2ac91872aedf748148d89a86050
