[INFO] fetching crate noodles-cram 0.50.0...
[INFO] testing noodles-cram-0.50.0 against 1.76.0 for beta-1.77-1
[INFO] extracting crate noodles-cram 0.50.0 into /workspace/builds/worker-0-tc1/source
[INFO] validating manifest of crates.io crate noodles-cram 0.50.0 on toolchain 1.76.0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.76.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate noodles-cram 0.50.0
[INFO] removed 0 missing examples
[INFO] finished tweaking crates.io crate noodles-cram 0.50.0
[INFO] tweaked toml for crates.io crate noodles-cram 0.50.0 written to /workspace/builds/worker-0-tc1/source/Cargo.toml
[INFO] crate crates.io crate noodles-cram 0.50.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.76.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded noodles-core v0.12.0
[INFO] [stderr]   Downloaded noodles-bam v0.51.0
[INFO] [stderr]   Downloaded libdeflater v1.19.0
[INFO] [stderr]   Downloaded async-compression v0.4.3
[INFO] [stderr]   Downloaded noodles-bgzf v0.25.0
[INFO] [stderr]   Downloaded noodles-fasta v0.30.0
[INFO] [stderr]   Downloaded noodles-csi v0.28.0
[INFO] [stderr]   Downloaded libdeflate-sys v1.19.0
[INFO] [stderr]   Downloaded noodles-sam v0.48.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+1.76.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 45ca4c02100c5a03fc2c21720b24ceee5d4cfb34029a17df1257275c0e060653
[INFO] running `Command { std: "docker" "start" "-a" "45ca4c02100c5a03fc2c21720b24ceee5d4cfb34029a17df1257275c0e060653", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "45ca4c02100c5a03fc2c21720b24ceee5d4cfb34029a17df1257275c0e060653", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "45ca4c02100c5a03fc2c21720b24ceee5d4cfb34029a17df1257275c0e060653", kill_on_drop: false }`
[INFO] [stdout] 45ca4c02100c5a03fc2c21720b24ceee5d4cfb34029a17df1257275c0e060653
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+1.76.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 85f29f17d2270b869642aa0f94b8bdbe554906e15e21d1326fd662d24c6921dc
[INFO] running `Command { std: "docker" "start" "-a" "85f29f17d2270b869642aa0f94b8bdbe554906e15e21d1326fd662d24c6921dc", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.148
[INFO] [stderr]    Compiling pkg-config v0.3.27
[INFO] [stderr]    Compiling crc32fast v1.3.2
[INFO] [stderr]    Compiling crossbeam-utils v0.8.16
[INFO] [stderr]    Compiling byteorder v1.4.3
[INFO] [stderr]    Compiling bytes v1.5.0
[INFO] [stderr]    Compiling noodles-core v0.12.0
[INFO] [stderr]    Compiling equivalent v1.0.1
[INFO] [stderr]    Compiling hashbrown v0.14.0
[INFO] [stderr]    Compiling bit-vec v0.6.3
[INFO] [stderr]    Compiling memchr v2.6.3
[INFO] [stderr]    Compiling lexical-util v0.8.5
[INFO] [stderr]    Compiling generic-array v0.14.7
[INFO] [stderr]    Compiling miniz_oxide v0.7.1
[INFO] [stderr]    Compiling bitflags v2.4.0
[INFO] [stderr]    Compiling flate2 v1.0.27
[INFO] [stderr]    Compiling indexmap v2.0.0
[INFO] [stderr]    Compiling lexical-write-integer v0.8.5
[INFO] [stderr]    Compiling lexical-parse-integer v0.8.6
[INFO] [stderr]    Compiling crossbeam-channel v0.5.8
[INFO] [stderr]    Compiling lexical-write-float v0.8.5
[INFO] [stderr]    Compiling lexical-parse-float v0.8.5
[INFO] [stderr]    Compiling crypto-common v0.1.6
[INFO] [stderr]    Compiling block-buffer v0.10.4
[INFO] [stderr]    Compiling digest v0.10.7
[INFO] [stderr]    Compiling cc v1.0.83
[INFO] [stderr]    Compiling noodles-bgzf v0.25.0
[INFO] [stderr]    Compiling md-5 v0.10.5
[INFO] [stderr]    Compiling lexical-core v0.8.5
[INFO] [stderr]    Compiling noodles-csi v0.28.0
[INFO] [stderr]    Compiling noodles-fasta v0.30.0
[INFO] [stderr]    Compiling noodles-sam v0.48.0
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling xz2 v0.1.7
[INFO] [stderr]    Compiling bzip2 v0.4.4
[INFO] [stderr]    Compiling noodles-bam v0.51.0
[INFO] [stderr]    Compiling noodles-cram v0.50.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 6.58s
[INFO] running `Command { std: "docker" "inspect" "85f29f17d2270b869642aa0f94b8bdbe554906e15e21d1326fd662d24c6921dc", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "85f29f17d2270b869642aa0f94b8bdbe554906e15e21d1326fd662d24c6921dc", kill_on_drop: false }`
[INFO] [stdout] 85f29f17d2270b869642aa0f94b8bdbe554906e15e21d1326fd662d24c6921dc
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+1.76.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 946ba117c9e7a30bb2f7776fe095f40b13bc7c569de9e2ab61254f972ad45b86
[INFO] running `Command { std: "docker" "start" "-a" "946ba117c9e7a30bb2f7776fe095f40b13bc7c569de9e2ab61254f972ad45b86", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.67
[INFO] [stderr]    Compiling futures-core v0.3.28
[INFO] [stderr]    Compiling futures-channel v0.3.28
[INFO] [stderr]    Compiling futures-task v0.3.28
[INFO] [stderr]    Compiling futures-sink v0.3.28
[INFO] [stderr]    Compiling futures-util v0.3.28
[INFO] [stderr]    Compiling once_cell v1.18.0
[INFO] [stderr]    Compiling futures-io v0.3.28
[INFO] [stderr]    Compiling num_cpus v1.16.0
[INFO] [stderr]    Compiling tracing-core v0.1.31
[INFO] [stderr]    Compiling tracing v0.1.37
[INFO] [stderr]    Compiling quote v1.0.33
[INFO] [stderr]    Compiling syn v2.0.37
[INFO] [stderr]    Compiling futures v0.3.28
[INFO] [stderr]    Compiling tokio-macros v2.1.0
[INFO] [stderr]    Compiling tokio v1.32.0
[INFO] [stderr]    Compiling tokio-util v0.7.9
[INFO] [stderr]    Compiling noodles-bgzf v0.25.0
[INFO] [stderr]    Compiling noodles-csi v0.28.0
[INFO] [stderr]    Compiling noodles-fasta v0.30.0
[INFO] [stderr]    Compiling noodles-sam v0.48.0
[INFO] [stderr]    Compiling noodles-bam v0.51.0
[INFO] [stderr]    Compiling noodles-cram v0.50.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 20.81s
[INFO] running `Command { std: "docker" "inspect" "946ba117c9e7a30bb2f7776fe095f40b13bc7c569de9e2ab61254f972ad45b86", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "946ba117c9e7a30bb2f7776fe095f40b13bc7c569de9e2ab61254f972ad45b86", kill_on_drop: false }`
[INFO] [stdout] 946ba117c9e7a30bb2f7776fe095f40b13bc7c569de9e2ab61254f972ad45b86
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+1.76.0" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] fbe25d84b43be43410a27eea300ec4938068c6d42aa4c2a2852fc2ab4c409d74
[INFO] running `Command { std: "docker" "start" "-a" "fbe25d84b43be43410a27eea300ec4938068c6d42aa4c2a2852fc2ab4c409d74", kill_on_drop: false }`
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.10s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/noodles_cram-a522c550c9477f7d)
[INFO] [stdout] 
[INFO] [stdout] running 180 tests
[INFO] [stdout] test codecs::aac::decode::tests::test_decode_order_0 ... ok
[INFO] [stdout] test codecs::aac::decode::tests::test_decode_bit_packing_with_6_symbols ... ok
[INFO] [stdout] test codecs::aac::decode::tests::test_decode_uncompressed ... ok
[INFO] [stdout] test codecs::aac::decode::tests::test_decode_rle_with_order_0 ... ok
[INFO] [stdout] test codecs::aac::encode::tests::test_encode_cat ... ok
[INFO] [stdout] test codecs::aac::decode::tests::test_decode_stripe ... ok
[INFO] [stdout] test codecs::aac::decode::tests::test_decode_order_1 ... ok
[INFO] [stdout] test codecs::aac::encode::tests::test_encode_order_0 ... ok
[INFO] [stdout] test codecs::aac::encode::tests::test_encode_ext ... ok
[INFO] [stdout] test codecs::aac::encode::tests::test_encode_pack ... ok
[INFO] [stdout] test codecs::aac::encode::tests::test_encode_order_1 ... ok
[INFO] [stdout] test codecs::aac::encode::tests::test_encode_rle_with_order_0 ... ok
[INFO] [stdout] test codecs::aac::encode::tests::test_encode_stripe ... ok
[INFO] [stdout] test codecs::aac::decode::tests::test_decode_rle_with_order_1 ... ok
[INFO] [stdout] test codecs::aac::encode::tests::test_encode_rle_with_order_1 ... ok
[INFO] [stdout] test codecs::fqzcomp::decode::tests::test_reverse_qualities ... ok
[INFO] [stdout] test codecs::rans_4x8::encode::order_1::tests::test_build_contexts ... ok
[INFO] [stdout] test codecs::rans_4x8::encode::order_1::tests::test_build_cumulative_contexts ... ok
[INFO] [stdout] test codecs::rans_4x8::encode::order_1::tests::test_normalize_contexts ... ok
[INFO] [stdout] test codecs::rans_4x8::decode::tests::test_read_header ... ok
[INFO] [stdout] test codecs::rans_4x8::encode::order_0::tests::test_build_frequencies ... ok
[INFO] [stdout] test codecs::rans_4x8::encode::tests::test_build_cumulative_frequencies ... ok
[INFO] [stdout] test codecs::rans_4x8::encode::order_0::tests::test_encode ... ok
[INFO] [stdout] test codecs::name_tokenizer::decode::tests::test_decode_with_arithmetic_coder ... ok
[INFO] [stdout] test codecs::rans_4x8::decode::tests::test_decode_with_order_0 ... ok
[INFO] [stdout] test codecs::rans_4x8::encode::tests::test_normalize_frequencies ... ok
[INFO] [stdout] test codecs::rans_4x8::encode::tests::test_write_header ... ok
[INFO] [stdout] test codecs::rans_4x8::encode::tests::test_encode_with_order_0 ... ok
[INFO] [stdout] test codecs::name_tokenizer::decode::tests::test_decode ... ok
[INFO] [stdout] test codecs::rans_4x8::order::tests::test_try_from_u8_for_order ... ok
[INFO] [stdout] test codecs::rans_nx16::decode::tests::test_decode_bit_packing_with_6_symbols ... ok
[INFO] [stdout] test codecs::rans_4x8::tests::test_self_0 ... ok
[INFO] [stdout] test codecs::rans_4x8::order::tests::test_from_order_for_u8 ... ok
[INFO] [stdout] test codecs::rans_nx16::decode::tests::test_decode_order_0 ... ok
[INFO] [stdout] test codecs::rans_nx16::decode::tests::test_decode_rle ... ok
[INFO] [stdout] test codecs::rans_nx16::decode::tests::test_decode_uncompressed ... ok
[INFO] [stdout] test codecs::rans_nx16::encode::tests::test_encode_order_0 ... ok
[INFO] [stdout] test codecs::rans_nx16::decode::tests::test_decode_stripe ... ok
[INFO] [stdout] test codecs::name_tokenizer::tests::test_self ... ok
[INFO] [stdout] test codecs::rans_nx16::encode::tests::test_encode_uncompressed ... ok
[INFO] [stdout] test container::block::compression_method::tests::test_default ... ok
[INFO] [stdout] test codecs::rans_nx16::encode::tests::test_encode_pack ... ok
[INFO] [stdout] test container::block::tests::test_len ... ok
[INFO] [stdout] test codecs::rans_nx16::encode::tests::test_encode_rle ... ok
[INFO] [stdout] test codecs::rans_nx16::encode::tests::test_encode_stripe ... ok
[INFO] [stdout] test crai::record::tests::test_fmt ... ok
[INFO] [stdout] test crai::writer::tests::test_write_record ... ok
[INFO] [stdout] test data_container::compression_header::data_series_encoding_map::builder::tests::test_default ... ok
[INFO] [stdout] test crai::record::tests::test_from_str ... ok
[INFO] [stdout] test crai::record::tests::test_from_str_with_invalid_records ... ok
[INFO] [stdout] test data_container::compression_header::data_series_encoding_map::data_series::tests::test_from_data_series_for_u8_array ... ok
[INFO] [stdout] test data_container::compression_header::data_series_encoding_map::data_series::tests::test_try_from_byte_array_for_data_series ... ok
[INFO] [stdout] test data_container::compression_header::encoding::codec::byte::tests::test_decode ... ok
[INFO] [stdout] test data_container::compression_header::encoding::codec::byte::tests::test_decode_exact ... ok
[INFO] [stdout] test data_container::compression_header::encoding::codec::byte_array::tests::test_decode ... ok
[INFO] [stdout] test data_container::compression_header::encoding::codec::byte::tests::test_encode ... ok
[INFO] [stdout] test data_container::compression_header::encoding::codec::byte_array::tests::test_encode ... ok
[INFO] [stdout] test data_container::compression_header::data_series_encoding_map::tests::test_len ... ok
[INFO] [stdout] test data_container::compression_header::encoding::codec::integer::tests::test_decode ... ok
[INFO] [stdout] test data_container::compression_header::encoding::codec::integer::tests::test_encode ... ok
[INFO] [stdout] test data_container::compression_header::preservation_map::key::tests::test_from_key_for_u8_array ... ok
[INFO] [stdout] test data_container::compression_header::preservation_map::key::tests::test_try_from_byte_slice_for_key ... ok
[INFO] [stdout] test data_container::compression_header::preservation_map::substitution_matrix::histogram::tests::test_hit ... ok
[INFO] [stdout] test data_container::compression_header::preservation_map::substitution_matrix::histogram::tests::test_get ... ok
[INFO] [stdout] test data_container::compression_header::preservation_map::substitution_matrix::builder::tests::test_build ... ok
[INFO] [stdout] test data_container::compression_header::preservation_map::substitution_matrix::histogram::tests::test_get_bins ... ok
[INFO] [stdout] test data_container::compression_header::preservation_map::substitution_matrix::tests::test_find_code ... ok
[INFO] [stdout] test data_container::compression_header::preservation_map::substitution_matrix::tests::test_from_histogram ... ok
[INFO] [stdout] test data_container::compression_header::preservation_map::substitution_matrix::tests::test_try_from_u8_slice ... ok
[INFO] [stdout] test data_container::compression_header::preservation_map::tag_ids_dictionary::key::tests::test_from_key_for_block_content_id ... ok
[INFO] [stdout] test data_container::compression_header::preservation_map::tag_ids_dictionary::builder::tests::test_from_records ... ok
[INFO] [stdout] test data_container::compression_header::preservation_map::substitution_matrix::tests::test_from_substitution_matrix_for_5_byte_array ... ok
[INFO] [stdout] test data_container::compression_header::tag_encoding_map::builder::tests::test_build ... ok
[INFO] [stdout] test data_container::slice::tests::test_calculate_template_size ... ok
[INFO] [stdout] test data_container::slice::tests::test_resolve_mates ... ok
[INFO] [stdout] test data_container::reference_sequence_context::tests::test_update ... ok
[INFO] [stdout] test data_container::slice::builder::tests::test_calculate_normalized_sequence_digest ... ok
[INFO] [stdout] test data_container::slice::tests::test_resolve_quality_scores ... ok
[INFO] [stdout] test file_definition::tests::test_default ... ok
[INFO] [stdout] test file_definition::version::tests::test_default ... ok
[INFO] [stdout] test huffman::tests::test_build_canonical_code_book ... ok
[INFO] [stdout] test data_container::slice::tests::test_resolve_bases ... ok
[INFO] [stdout] test huffman::tests::test_decode ... ok
[INFO] [stdout] test indexed_reader::builder::tests::test_build_index_src ... ok
[INFO] [stdout] test io::bit_reader::tests::test_read_u32 ... ok
[INFO] [stdout] test io::bit_writer::tests::test_write_u32_with_0_len ... ok
[INFO] [stdout] test io::bit_writer::tests::test_write_u32_with_length_greater_than_32_bits ... ok
[INFO] [stdout] test io::bit_writer::tests::test_write_u32 ... ok
[INFO] [stdout] test reader::container::block::tests::test_get_compression_method ... ok
[INFO] [stdout] test reader::container::block::tests::test_get_content_type ... ok
[INFO] [stdout] test reader::container::block::tests::test_read_block ... ok
[INFO] [stdout] test reader::container::block::tests::test_read_block_with_empty_block ... ok
[INFO] [stdout] test reader::data_container::compression_header::encoding::tests::test_get_byte_array_len_codec ... ok
[INFO] [stdout] test reader::data_container::compression_header::encoding::tests::test_get_byte_array_stop_codec ... ok
[INFO] [stdout] test num::itf8::tests::test_size_of ... ok
[INFO] [stdout] test reader::data_container::compression_header::encoding::tests::test_get_beta_codec ... ok
[INFO] [stdout] test reader::data_container::compression_header::encoding::tests::test_get_gamma_codec ... ok
[INFO] [stdout] test reader::data_container::compression_header::encoding::tests::test_get_golomb_rice_codec ... ok
[INFO] [stdout] test reader::data_container::compression_header::encoding::tests::test_get_huffman_codec ... ok
[INFO] [stdout] test reader::data_container::compression_header::encoding::tests::test_get_golomb_codec ... ok
[INFO] [stdout] test reader::data_container::compression_header::encoding::tests::test_get_external_codec ... ok
[INFO] [stdout] test reader::data_container::compression_header::encoding::tests::test_get_kind ... ok
[INFO] [stdout] test reader::data_container::compression_header::encoding::tests::test_get_subexp_codec ... ok
[INFO] [stdout] test reader::data_container::compression_header::preservation_map::tests::test_get_bool ... ok
[INFO] [stdout] test reader::data_container::compression_header::preservation_map::tests::test_get_preservation_map_with_no_substitution_matrix ... ok
[INFO] [stdout] test reader::data_container::compression_header::preservation_map::tests::test_get_preservation_map_with_no_tag_ids_dictionary ... ok
[INFO] [stdout] test reader::data_container::header::tests::test_read_header ... ok
[INFO] [stdout] test reader::data_container::compression_header::preservation_map::tests::test_get_preservation_map ... ok
[INFO] [stdout] test reader::data_container::slice::header::tests::test_get_header ... ok
[INFO] [stdout] test reader::data_container::header::tests::test_read_header_with_a_checksum_mismatch ... ok
[INFO] [stdout] test reader::data_container::header::tests::test_read_header_with_eof ... ok
[INFO] [stdout] test reader::data_container::compression_header::data_series_encoding_map::tests::test_get_data_series_encoding_map ... ok
[INFO] [stdout] test reader::header_container::tests::test_read_sam_header_with_invalid_compression_method ... ok
[INFO] [stdout] test reader::header_container::tests::test_read_sam_header_with_invalid_content_type ... ok
[INFO] [stdout] test reader::num::itf8::tests::test_get_itf8 ... ok
[INFO] [stdout] test reader::header_container::tests::test_read_sam_header ... ok
[INFO] [stdout] test reader::num::itf8::tests::test_read_itf8 ... ok
[INFO] [stdout] test reader::num::ltf8::tests::test_get_ltf8 ... ok
[INFO] [stdout] test reader::tests::test_read_file_definition ... ok
[INFO] [stdout] test reader::tests::test_read_magic_number ... ok
[INFO] [stdout] test reader::num::ltf8::tests::test_read_ltf8 ... ok
[INFO] [stdout] test reader::num::vlq::tests::test_read_uint7 ... ok
[INFO] [stdout] test record::builder::tests::test_default ... ok
[INFO] [stdout] test reader::tests::test_read_magic_number_with_invalid_input ... ok
[INFO] [stdout] test record::feature::code::tests::test_from_code_for_u8 ... ok
[INFO] [stdout] test record::feature::substitution::base::tests::test_default ... ok
[INFO] [stdout] test record::feature::substitution::base::tests::test_from_base_for_u8 ... ok
[INFO] [stdout] test record::feature::substitution::base::tests::test_try_from_sam_record_sequence_base_for_base ... ok
[INFO] [stdout] test record::feature::substitution::base::tests::test_from_base_for_sam_record_sequence_base ... ok
[INFO] [stdout] test record::feature::substitution::base::tests::test_try_from_u8_for_base ... ok
[INFO] [stdout] test record::feature::tests::test_code ... ok
[INFO] [stdout] test record::feature::code::tests::test_try_from_u8_for_code ... ok
[INFO] [stdout] test record::features::tests::test_cigar_to_features_with_quality_scores_stored_as_array ... ok
[INFO] [stdout] test record::features::tests::test_cigar_to_features ... ok
[INFO] [stdout] test record::feature::tests::test_position ... ok
[INFO] [stdout] test record::features::tests::test_try_into_cigar ... ok
[INFO] [stdout] test record::features::with_positions::tests::test_next ... ok
[INFO] [stdout] test record::flags::tests::test_contains ... ok
[INFO] [stdout] test record::flags::tests::test_from_u8_for_flags ... ok
[INFO] [stdout] test record::next_mate_flags::tests::test_contains ... ok
[INFO] [stdout] test record::flags::tests::test_from_flags_for_u8 ... ok
[INFO] [stdout] test record::next_mate_flags::tests::test_default ... ok
[INFO] [stdout] test record::flags::tests::test_default ... ok
[INFO] [stdout] test record::next_mate_flags::tests::test_from_flags_for_u8 ... ok
[INFO] [stdout] test record::next_mate_flags::tests::test_from_u8_for_flags ... ok
[INFO] [stdout] test record::resolve::tests::test_resolve_bases_without_a_reference_sequence ... ok
[INFO] [stdout] test record::resolve::tests::test_resolve_quality_scores ... ok
[INFO] [stdout] test record::tests::test_calculate_alignment_span ... ok
[INFO] [stdout] test writer::container::block::tests::test_write_compression_method ... ok
[INFO] [stdout] test writer::container::block::tests::test_write_content_type ... ok
[INFO] [stdout] test record::resolve::tests::test_resolve_bases ... ok
[INFO] [stdout] test writer::builder::tests::test_uses_cram_3_1_codecs ... ok
[INFO] [stdout] test writer::data_container::compression_header::encoding::tests::test_write_beta_codec ... ok
[INFO] [stdout] test writer::data_container::compression_header::encoding::tests::test_write_byte_array_len_codec ... ok
[INFO] [stdout] test writer::data_container::compression_header::encoding::tests::test_write_gamma_codec ... ok
[INFO] [stdout] test writer::data_container::compression_header::encoding::tests::test_write_byte_array_stop_codec ... ok
[INFO] [stdout] test writer::data_container::compression_header::encoding::tests::test_write_golomb_codec ... ok
[INFO] [stdout] test writer::data_container::compression_header::encoding::tests::test_write_golomb_rice_codec ... ok
[INFO] [stdout] test writer::data_container::compression_header::encoding::tests::test_write_external_codec ... ok
[INFO] [stdout] test writer::data_container::compression_header::preservation_map::tests::test_write_tag_ids_dictionary ... ok
[INFO] [stdout] test writer::data_container::compression_header::encoding::tests::test_write_huffman_codec ... ok
[INFO] [stdout] test writer::data_container::compression_header::encoding::tests::test_write_subexp_codec ... ok
[INFO] [stdout] test writer::num::itf8::tests::test_write_itf8 ... ok
[INFO] [stdout] test writer::num::ltf8::tests::test_write_ltf8 ... ok
[INFO] [stdout] test writer::header_container::header::tests::test_write_header ... ok
[INFO] [stdout] test writer::header_container::tests::test_validate_reference_sequences ... ok
[INFO] [stdout] test writer::num::vlq::tests::test_write_uint7 ... ok
[INFO] [stdout] test writer::tests::test_add_missing_reference_sequence_checksums ... ok
[INFO] [stdout] test codecs::rans_nx16::decode::tests::test_decode_order_1 ... ok
[INFO] [stdout] test codecs::rans_4x8::encode::order_1::tests::test_encode ... ok
[INFO] [stdout] test crai::reader::tests::test_read_index ... ok
[INFO] [stdout] test codecs::rans_nx16::encode::tests::test_encode_order_1 ... ok
[INFO] [stdout] test writer::header_container::tests::test_write_header_container ... ok
[INFO] [stdout] test codecs::rans_4x8::encode::tests::test_encode_with_order_1 ... ok
[INFO] [stdout] test codecs::rans_4x8::decode::tests::test_decode_with_order_1 ... ok
[INFO] [stdout] test codecs::rans_4x8::tests::test_self_1 ... ok
[INFO] [stdout] test codecs::fqzcomp::decode::tests::test_decode ... ok
[INFO] [stdout] test codecs::fqzcomp::encode::tests::test_encode ... ok
[INFO] [stdout] test codecs::fqzcomp::encode::tests::test_encode_with_do_len ... ok
[INFO] [stdout] test codecs::fqzcomp::tests::test_self ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 180 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.14s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests noodles-cram
[INFO] [stdout] 
[INFO] [stdout] running 72 tests
[INFO] [stdout] test src/crai/reader.rs - crai::reader::Reader<R>::read_index (line 37) - compile ... ok
[INFO] [stdout] test src/crai.rs - crai::read (line 27) - compile ... ok
[INFO] [stdout] test src/crai.rs - crai::write (line 48) - compile ... ok
[INFO] [stderr] error: doctest failed, to rerun pass `--doc`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/1.76.0-x86_64-unknown-linux-gnu/bin/rustdoc --edition=2021 --crate-type lib --crate-name noodles_cram --test src/lib.rs --test-run-directory /opt/rustwide/workdir -L dependency=/opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps -L native=/opt/rustwide/target/debug/build/bzip2-sys-081b61348de7ae3b/out/lib -L native=/usr/lib/x86_64-linux-gnu --extern bitflags=/opt/rustwide/target/debug/deps/libbitflags-7a728921c2553030.rlib --extern byteorder=/opt/rustwide/target/debug/deps/libbyteorder-7bbbfeb81fee1017.rlib --extern bytes=/opt/rustwide/target/debug/deps/libbytes-ed3aeb66deaa63ba.rlib --extern bzip2=/opt/rustwide/target/debug/deps/libbzip2-50c791ddbf414873.rlib --extern flate2=/opt/rustwide/target/debug/deps/libflate2-7540d9e97ea5af26.rlib --extern md5=/opt/rustwide/target/debug/deps/libmd5-be281a0632791062.rlib --extern noodles_bam=/opt/rustwide/target/debug/deps/libnoodles_bam-baa6704ae1d11a34.rlib --extern noodles_core=/opt/rustwide/target/debug/deps/libnoodles_core-2cfa5030f6bdbbfd.rlib --extern noodles_cram=/opt/rustwide/target/debug/deps/libnoodles_cram-92f1072410a16214.rlib --extern noodles_fasta=/opt/rustwide/target/debug/deps/libnoodles_fasta-972fb6ac4d4a3e06.rlib --extern noodles_sam=/opt/rustwide/target/debug/deps/libnoodles_sam-7b3d0c5a5b7deec6.rlib --extern tokio=/opt/rustwide/target/debug/deps/libtokio-b8d94dfddf57efaa.rlib --extern xz2=/opt/rustwide/target/debug/deps/libxz2-d26b5e47e30aa586.rlib -C embed-bitcode=no --cap-lints=warn --error-format human` (signal: 9, SIGKILL: kill)
[INFO] running `Command { std: "docker" "inspect" "fbe25d84b43be43410a27eea300ec4938068c6d42aa4c2a2852fc2ab4c409d74", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "fbe25d84b43be43410a27eea300ec4938068c6d42aa4c2a2852fc2ab4c409d74", kill_on_drop: false }`
[INFO] [stdout] fbe25d84b43be43410a27eea300ec4938068c6d42aa4c2a2852fc2ab4c409d74
[INFO] testing noodles-cram-0.50.0 against beta-2024-02-10 for beta-1.77-1
[INFO] extracting crate noodles-cram 0.50.0 into /workspace/builds/worker-0-tc2/source
[INFO] validating manifest of crates.io crate noodles-cram 0.50.0 on toolchain beta-2024-02-10
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2024-02-10" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate noodles-cram 0.50.0
[INFO] removed 0 missing examples
[INFO] finished tweaking crates.io crate noodles-cram 0.50.0
[INFO] tweaked toml for crates.io crate noodles-cram 0.50.0 written to /workspace/builds/worker-0-tc2/source/Cargo.toml
[INFO] crate crates.io crate noodles-cram 0.50.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2024-02-10" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2024-02-10" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] f27f0b935b1a3b416c33f372f74618c52250985d51c584208715a8ac45533d14
[INFO] running `Command { std: "docker" "start" "-a" "f27f0b935b1a3b416c33f372f74618c52250985d51c584208715a8ac45533d14", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "f27f0b935b1a3b416c33f372f74618c52250985d51c584208715a8ac45533d14", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f27f0b935b1a3b416c33f372f74618c52250985d51c584208715a8ac45533d14", kill_on_drop: false }`
[INFO] [stdout] f27f0b935b1a3b416c33f372f74618c52250985d51c584208715a8ac45533d14
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2024-02-10" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] f7ec217c949f1ccfa81b54203e50d27df2a1487cd2dfe2b9b53b65a164229b6e
[INFO] running `Command { std: "docker" "start" "-a" "f7ec217c949f1ccfa81b54203e50d27df2a1487cd2dfe2b9b53b65a164229b6e", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.148
[INFO] [stderr]    Compiling pkg-config v0.3.27
[INFO] [stderr]    Compiling crc32fast v1.3.2
[INFO] [stderr]    Compiling crossbeam-utils v0.8.16
[INFO] [stderr]    Compiling lexical-util v0.8.5
[INFO] [stderr]    Compiling miniz_oxide v0.7.1
[INFO] [stderr]    Compiling byteorder v1.4.3
[INFO] [stderr]    Compiling bytes v1.5.0
[INFO] [stderr]    Compiling noodles-core v0.12.0
[INFO] [stderr]    Compiling equivalent v1.0.1
[INFO] [stderr]    Compiling hashbrown v0.14.0
[INFO] [stderr]    Compiling memchr v2.6.3
[INFO] [stderr]    Compiling bit-vec v0.6.3
[INFO] [stderr]    Compiling generic-array v0.14.7
[INFO] [stderr]    Compiling bitflags v2.4.0
[INFO] [stderr]    Compiling flate2 v1.0.27
[INFO] [stderr]    Compiling lexical-write-integer v0.8.5
[INFO] [stderr]    Compiling lexical-parse-integer v0.8.6
[INFO] [stderr]    Compiling indexmap v2.0.0
[INFO] [stderr]    Compiling lexical-parse-float v0.8.5
[INFO] [stderr]    Compiling lexical-write-float v0.8.5
[INFO] [stderr]    Compiling crossbeam-channel v0.5.8
[INFO] [stderr]    Compiling crypto-common v0.1.6
[INFO] [stderr]    Compiling block-buffer v0.10.4
[INFO] [stderr]    Compiling cc v1.0.83
[INFO] [stderr]    Compiling digest v0.10.7
[INFO] [stderr]    Compiling md-5 v0.10.5
[INFO] [stderr]    Compiling lexical-core v0.8.5
[INFO] [stderr]    Compiling noodles-bgzf v0.25.0
[INFO] [stderr]    Compiling noodles-csi v0.28.0
[INFO] [stderr]    Compiling noodles-fasta v0.30.0
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling noodles-sam v0.48.0
[INFO] [stderr]    Compiling xz2 v0.1.7
[INFO] [stderr]    Compiling bzip2 v0.4.4
[INFO] [stderr]    Compiling noodles-bam v0.51.0
[INFO] [stderr]    Compiling noodles-cram v0.50.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 6.44s
[INFO] running `Command { std: "docker" "inspect" "f7ec217c949f1ccfa81b54203e50d27df2a1487cd2dfe2b9b53b65a164229b6e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f7ec217c949f1ccfa81b54203e50d27df2a1487cd2dfe2b9b53b65a164229b6e", kill_on_drop: false }`
[INFO] [stdout] f7ec217c949f1ccfa81b54203e50d27df2a1487cd2dfe2b9b53b65a164229b6e
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2024-02-10" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] b19ffdeb9911c1b6b15fa76110a717e105b7c585d3faee774d283b9ce5e47c52
[INFO] running `Command { std: "docker" "start" "-a" "b19ffdeb9911c1b6b15fa76110a717e105b7c585d3faee774d283b9ce5e47c52", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.67
[INFO] [stderr]    Compiling futures-core v0.3.28
[INFO] [stderr]    Compiling futures-task v0.3.28
[INFO] [stderr]    Compiling futures-channel v0.3.28
[INFO] [stderr]    Compiling futures-sink v0.3.28
[INFO] [stderr]    Compiling futures-util v0.3.28
[INFO] [stderr]    Compiling once_cell v1.18.0
[INFO] [stderr]    Compiling num_cpus v1.16.0
[INFO] [stderr]    Compiling futures-io v0.3.28
[INFO] [stderr]    Compiling tracing-core v0.1.31
[INFO] [stderr]    Compiling tracing v0.1.37
[INFO] [stderr]    Compiling quote v1.0.33
[INFO] [stderr]    Compiling syn v2.0.37
[INFO] [stderr]    Compiling futures v0.3.28
[INFO] [stderr]    Compiling tokio-macros v2.1.0
[INFO] [stderr]    Compiling tokio v1.32.0
[INFO] [stderr]    Compiling tokio-util v0.7.9
[INFO] [stderr]    Compiling noodles-bgzf v0.25.0
[INFO] [stderr]    Compiling noodles-csi v0.28.0
[INFO] [stderr]    Compiling noodles-fasta v0.30.0
[INFO] [stderr]    Compiling noodles-sam v0.48.0
[INFO] [stderr]    Compiling noodles-bam v0.51.0
[INFO] [stderr]    Compiling noodles-cram v0.50.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 17.32s
[INFO] running `Command { std: "docker" "inspect" "b19ffdeb9911c1b6b15fa76110a717e105b7c585d3faee774d283b9ce5e47c52", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b19ffdeb9911c1b6b15fa76110a717e105b7c585d3faee774d283b9ce5e47c52", kill_on_drop: false }`
[INFO] [stdout] b19ffdeb9911c1b6b15fa76110a717e105b7c585d3faee774d283b9ce5e47c52
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2024-02-10" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 3b96a27b19820996008b0fe369a910b8bad23fa91089494ba164650f3f2b096b
[INFO] running `Command { std: "docker" "start" "-a" "3b96a27b19820996008b0fe369a910b8bad23fa91089494ba164650f3f2b096b", kill_on_drop: false }`
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.10s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/noodles_cram-3fbd9b66487a7bf9)
[INFO] [stdout] 
[INFO] [stdout] running 180 tests
[INFO] [stdout] test codecs::aac::decode::tests::test_decode_bit_packing_with_6_symbols ... ok
[INFO] [stdout] test codecs::aac::decode::tests::test_decode_order_0 ... ok
[INFO] [stdout] test codecs::aac::decode::tests::test_decode_order_1 ... ok
[INFO] [stdout] test codecs::aac::decode::tests::test_decode_uncompressed ... ok
[INFO] [stdout] test codecs::aac::decode::tests::test_decode_stripe ... ok
[INFO] [stdout] test codecs::aac::encode::tests::test_encode_cat ... ok
[INFO] [stdout] test codecs::aac::decode::tests::test_decode_rle_with_order_0 ... ok
[INFO] [stdout] test codecs::aac::encode::tests::test_encode_order_0 ... ok
[INFO] [stdout] test codecs::aac::decode::tests::test_decode_rle_with_order_1 ... ok
[INFO] [stdout] test codecs::aac::encode::tests::test_encode_ext ... ok
[INFO] [stdout] test codecs::aac::encode::tests::test_encode_order_1 ... ok
[INFO] [stdout] test codecs::aac::encode::tests::test_encode_pack ... ok
[INFO] [stdout] test codecs::aac::encode::tests::test_encode_rle_with_order_0 ... ok
[INFO] [stdout] test codecs::aac::encode::tests::test_encode_stripe ... ok
[INFO] [stdout] test codecs::fqzcomp::decode::tests::test_reverse_qualities ... ok
[INFO] [stdout] test codecs::aac::encode::tests::test_encode_rle_with_order_1 ... ok
[INFO] [stdout] test codecs::rans_4x8::decode::tests::test_read_header ... ok
[INFO] [stdout] test codecs::rans_4x8::encode::order_0::tests::test_build_frequencies ... ok
[INFO] [stdout] test codecs::rans_4x8::encode::order_1::tests::test_build_cumulative_contexts ... ok
[INFO] [stdout] test codecs::rans_4x8::encode::order_1::tests::test_normalize_contexts ... ok
[INFO] [stdout] test codecs::rans_4x8::encode::order_0::tests::test_encode ... ok
[INFO] [stdout] test codecs::rans_4x8::encode::order_1::tests::test_build_contexts ... ok
[INFO] [stdout] test codecs::name_tokenizer::decode::tests::test_decode ... ok
[INFO] [stdout] test codecs::rans_4x8::encode::tests::test_normalize_frequencies ... ok
[INFO] [stdout] test codecs::name_tokenizer::tests::test_self ... ok
[INFO] [stdout] test codecs::rans_4x8::decode::tests::test_decode_with_order_0 ... ok
[INFO] [stdout] test codecs::rans_4x8::encode::tests::test_build_cumulative_frequencies ... ok
[INFO] [stdout] test codecs::rans_4x8::order::tests::test_try_from_u8_for_order ... ok
[INFO] [stdout] test codecs::rans_4x8::encode::tests::test_write_header ... ok
[INFO] [stdout] test codecs::rans_4x8::order::tests::test_from_order_for_u8 ... ok
[INFO] [stdout] test codecs::rans_4x8::encode::tests::test_encode_with_order_0 ... ok
[INFO] [stdout] test codecs::rans_4x8::tests::test_self_0 ... ok
[INFO] [stdout] test codecs::rans_nx16::decode::tests::test_decode_order_0 ... ok
[INFO] [stdout] test codecs::rans_nx16::decode::tests::test_decode_bit_packing_with_6_symbols ... ok
[INFO] [stdout] test codecs::rans_nx16::decode::tests::test_decode_uncompressed ... ok
[INFO] [stdout] test codecs::rans_nx16::decode::tests::test_decode_rle ... ok
[INFO] [stdout] test codecs::rans_nx16::encode::tests::test_encode_order_0 ... ok
[INFO] [stdout] test codecs::name_tokenizer::decode::tests::test_decode_with_arithmetic_coder ... ok
[INFO] [stdout] test container::block::compression_method::tests::test_default ... ok
[INFO] [stdout] test codecs::rans_nx16::encode::tests::test_encode_pack ... ok
[INFO] [stdout] test codecs::rans_nx16::encode::tests::test_encode_rle ... ok
[INFO] [stdout] test container::block::tests::test_len ... ok
[INFO] [stdout] test codecs::rans_nx16::decode::tests::test_decode_stripe ... ok
[INFO] [stdout] test codecs::rans_nx16::encode::tests::test_encode_uncompressed ... ok
[INFO] [stdout] test codecs::rans_nx16::encode::tests::test_encode_stripe ... ok
[INFO] [stdout] test crai::record::tests::test_fmt ... ok
[INFO] [stdout] test crai::record::tests::test_from_str_with_invalid_records ... ok
[INFO] [stdout] test crai::record::tests::test_from_str ... ok
[INFO] [stdout] test crai::writer::tests::test_write_record ... ok
[INFO] [stdout] test data_container::compression_header::data_series_encoding_map::builder::tests::test_default ... ok
[INFO] [stdout] test data_container::compression_header::data_series_encoding_map::data_series::tests::test_from_data_series_for_u8_array ... ok
[INFO] [stdout] test data_container::compression_header::data_series_encoding_map::data_series::tests::test_try_from_byte_array_for_data_series ... ok
[INFO] [stdout] test data_container::compression_header::data_series_encoding_map::tests::test_len ... ok
[INFO] [stdout] test data_container::compression_header::encoding::codec::byte::tests::test_decode_exact ... ok
[INFO] [stdout] test data_container::compression_header::encoding::codec::byte::tests::test_decode ... ok
[INFO] [stdout] test data_container::compression_header::encoding::codec::byte::tests::test_encode ... ok
[INFO] [stdout] test data_container::compression_header::encoding::codec::byte_array::tests::test_encode ... ok
[INFO] [stdout] test data_container::compression_header::encoding::codec::integer::tests::test_encode ... ok
[INFO] [stdout] test data_container::compression_header::encoding::codec::byte_array::tests::test_decode ... ok
[INFO] [stdout] test data_container::compression_header::encoding::codec::integer::tests::test_decode ... ok
[INFO] [stdout] test data_container::compression_header::preservation_map::key::tests::test_from_key_for_u8_array ... ok
[INFO] [stdout] test data_container::compression_header::preservation_map::substitution_matrix::builder::tests::test_build ... ok
[INFO] [stdout] test data_container::compression_header::preservation_map::key::tests::test_try_from_byte_slice_for_key ... ok
[INFO] [stdout] test data_container::compression_header::preservation_map::substitution_matrix::histogram::tests::test_get ... ok
[INFO] [stdout] test data_container::compression_header::preservation_map::substitution_matrix::tests::test_from_histogram ... ok
[INFO] [stdout] test data_container::compression_header::preservation_map::substitution_matrix::tests::test_find_code ... ok
[INFO] [stdout] test data_container::compression_header::preservation_map::substitution_matrix::tests::test_from_substitution_matrix_for_5_byte_array ... ok
[INFO] [stdout] test data_container::compression_header::preservation_map::substitution_matrix::histogram::tests::test_get_bins ... ok
[INFO] [stdout] test data_container::compression_header::preservation_map::substitution_matrix::histogram::tests::test_hit ... ok
[INFO] [stdout] test data_container::compression_header::preservation_map::substitution_matrix::tests::test_try_from_u8_slice ... ok
[INFO] [stdout] test data_container::compression_header::preservation_map::tag_ids_dictionary::builder::tests::test_from_records ... ok
[INFO] [stdout] test data_container::compression_header::tag_encoding_map::builder::tests::test_build ... ok
[INFO] [stdout] test data_container::reference_sequence_context::tests::test_update ... ok
[INFO] [stdout] test data_container::compression_header::preservation_map::tag_ids_dictionary::key::tests::test_from_key_for_block_content_id ... ok
[INFO] [stdout] test data_container::slice::tests::test_resolve_quality_scores ... ok
[INFO] [stdout] test data_container::slice::tests::test_resolve_mates ... ok
[INFO] [stdout] test data_container::slice::tests::test_resolve_bases ... ok
[INFO] [stdout] test data_container::slice::tests::test_calculate_template_size ... ok
[INFO] [stdout] test data_container::slice::builder::tests::test_calculate_normalized_sequence_digest ... ok
[INFO] [stdout] test huffman::tests::test_decode ... ok
[INFO] [stdout] test file_definition::tests::test_default ... ok
[INFO] [stdout] test file_definition::version::tests::test_default ... ok
[INFO] [stdout] test huffman::tests::test_build_canonical_code_book ... ok
[INFO] [stdout] test indexed_reader::builder::tests::test_build_index_src ... ok
[INFO] [stdout] test io::bit_reader::tests::test_read_u32 ... ok
[INFO] [stdout] test io::bit_writer::tests::test_write_u32_with_0_len ... ok
[INFO] [stdout] test num::itf8::tests::test_size_of ... ok
[INFO] [stdout] test reader::container::block::tests::test_get_compression_method ... ok
[INFO] [stdout] test io::bit_writer::tests::test_write_u32_with_length_greater_than_32_bits ... ok
[INFO] [stdout] test io::bit_writer::tests::test_write_u32 ... ok
[INFO] [stdout] test reader::container::block::tests::test_get_content_type ... ok
[INFO] [stdout] test reader::container::block::tests::test_read_block_with_empty_block ... ok
[INFO] [stdout] test reader::data_container::compression_header::encoding::tests::test_get_beta_codec ... ok
[INFO] [stdout] test reader::data_container::compression_header::encoding::tests::test_get_byte_array_stop_codec ... ok
[INFO] [stdout] test reader::data_container::compression_header::encoding::tests::test_get_byte_array_len_codec ... ok
[INFO] [stdout] test reader::data_container::compression_header::encoding::tests::test_get_external_codec ... ok
[INFO] [stdout] test reader::data_container::compression_header::encoding::tests::test_get_gamma_codec ... ok
[INFO] [stdout] test reader::container::block::tests::test_read_block ... ok
[INFO] [stdout] test reader::data_container::compression_header::encoding::tests::test_get_golomb_rice_codec ... ok
[INFO] [stdout] test reader::data_container::compression_header::encoding::tests::test_get_golomb_codec ... ok
[INFO] [stdout] test reader::data_container::compression_header::encoding::tests::test_get_kind ... ok
[INFO] [stdout] test codecs::rans_nx16::decode::tests::test_decode_order_1 ... ok
[INFO] [stdout] test reader::data_container::compression_header::encoding::tests::test_get_huffman_codec ... ok
[INFO] [stdout] test reader::data_container::compression_header::data_series_encoding_map::tests::test_get_data_series_encoding_map ... ok
[INFO] [stdout] test reader::data_container::compression_header::preservation_map::tests::test_get_preservation_map ... ok
[INFO] [stdout] test reader::data_container::compression_header::encoding::tests::test_get_subexp_codec ... ok
[INFO] [stdout] test reader::data_container::compression_header::preservation_map::tests::test_get_preservation_map_with_no_substitution_matrix ... ok
[INFO] [stdout] test reader::data_container::compression_header::preservation_map::tests::test_get_bool ... ok
[INFO] [stdout] test reader::data_container::header::tests::test_read_header ... ok
[INFO] [stdout] test reader::data_container::compression_header::preservation_map::tests::test_get_preservation_map_with_no_tag_ids_dictionary ... ok
[INFO] [stdout] test reader::data_container::header::tests::test_read_header_with_a_checksum_mismatch ... ok
[INFO] [stdout] test reader::data_container::header::tests::test_read_header_with_eof ... ok
[INFO] [stdout] test reader::num::itf8::tests::test_get_itf8 ... ok
[INFO] [stdout] test reader::header_container::tests::test_read_sam_header ... ok
[INFO] [stdout] test reader::num::itf8::tests::test_read_itf8 ... ok
[INFO] [stdout] test reader::header_container::tests::test_read_sam_header_with_invalid_compression_method ... ok
[INFO] [stdout] test reader::num::ltf8::tests::test_get_ltf8 ... ok
[INFO] [stdout] test reader::header_container::tests::test_read_sam_header_with_invalid_content_type ... ok
[INFO] [stdout] test reader::data_container::slice::header::tests::test_get_header ... ok
[INFO] [stdout] test codecs::rans_4x8::encode::tests::test_encode_with_order_1 ... ok
[INFO] [stdout] test reader::num::ltf8::tests::test_read_ltf8 ... ok
[INFO] [stdout] test reader::tests::test_read_file_definition ... ok
[INFO] [stdout] test reader::tests::test_read_magic_number ... ok
[INFO] [stdout] test reader::tests::test_read_magic_number_with_invalid_input ... ok
[INFO] [stdout] test reader::num::vlq::tests::test_read_uint7 ... ok
[INFO] [stdout] test record::feature::code::tests::test_try_from_u8_for_code ... ok
[INFO] [stdout] test record::feature::code::tests::test_from_code_for_u8 ... ok
[INFO] [stdout] test record::feature::substitution::base::tests::test_default ... ok
[INFO] [stdout] test record::feature::substitution::base::tests::test_from_base_for_sam_record_sequence_base ... ok
[INFO] [stdout] test codecs::rans_4x8::encode::order_1::tests::test_encode ... ok
[INFO] [stdout] test record::builder::tests::test_default ... ok
[INFO] [stdout] test record::feature::substitution::base::tests::test_from_base_for_u8 ... ok
[INFO] [stdout] test record::feature::substitution::base::tests::test_try_from_sam_record_sequence_base_for_base ... ok
[INFO] [stdout] test record::feature::tests::test_position ... ok
[INFO] [stdout] test record::features::tests::test_cigar_to_features ... ok
[INFO] [stdout] test record::flags::tests::test_contains ... ok
[INFO] [stdout] test record::flags::tests::test_default ... ok
[INFO] [stdout] test record::features::tests::test_try_into_cigar ... ok
[INFO] [stdout] test record::flags::tests::test_from_flags_for_u8 ... ok
[INFO] [stdout] test record::feature::substitution::base::tests::test_try_from_u8_for_base ... ok
[INFO] [stdout] test record::features::with_positions::tests::test_next ... ok
[INFO] [stdout] test record::features::tests::test_cigar_to_features_with_quality_scores_stored_as_array ... ok
[INFO] [stdout] test record::feature::tests::test_code ... ok
[INFO] [stdout] test record::next_mate_flags::tests::test_default ... ok
[INFO] [stdout] test record::resolve::tests::test_resolve_bases ... ok
[INFO] [stdout] test record::next_mate_flags::tests::test_contains ... ok
[INFO] [stdout] test record::resolve::tests::test_resolve_quality_scores ... ok
[INFO] [stdout] test record::tests::test_calculate_alignment_span ... ok
[INFO] [stdout] test record::next_mate_flags::tests::test_from_flags_for_u8 ... ok
[INFO] [stdout] test record::flags::tests::test_from_u8_for_flags ... ok
[INFO] [stdout] test record::next_mate_flags::tests::test_from_u8_for_flags ... ok
[INFO] [stdout] test record::resolve::tests::test_resolve_bases_without_a_reference_sequence ... ok
[INFO] [stdout] test writer::builder::tests::test_uses_cram_3_1_codecs ... ok
[INFO] [stdout] test writer::data_container::compression_header::encoding::tests::test_write_beta_codec ... ok
[INFO] [stdout] test writer::container::block::tests::test_write_content_type ... ok
[INFO] [stdout] test writer::data_container::compression_header::encoding::tests::test_write_external_codec ... ok
[INFO] [stdout] test writer::data_container::compression_header::encoding::tests::test_write_gamma_codec ... ok
[INFO] [stdout] test writer::data_container::compression_header::encoding::tests::test_write_byte_array_len_codec ... ok
[INFO] [stdout] test writer::container::block::tests::test_write_compression_method ... ok
[INFO] [stdout] test writer::data_container::compression_header::encoding::tests::test_write_golomb_codec ... ok
[INFO] [stdout] test writer::data_container::compression_header::encoding::tests::test_write_golomb_rice_codec ... ok
[INFO] [stdout] test writer::data_container::compression_header::encoding::tests::test_write_huffman_codec ... ok
[INFO] [stdout] test writer::data_container::compression_header::encoding::tests::test_write_byte_array_stop_codec ... ok
[INFO] [stdout] test codecs::rans_nx16::encode::tests::test_encode_order_1 ... ok
[INFO] [stdout] test writer::num::ltf8::tests::test_write_ltf8 ... ok
[INFO] [stdout] test writer::data_container::compression_header::encoding::tests::test_write_subexp_codec ... ok
[INFO] [stdout] test writer::num::itf8::tests::test_write_itf8 ... ok
[INFO] [stdout] test writer::header_container::header::tests::test_write_header ... ok
[INFO] [stdout] test writer::header_container::tests::test_validate_reference_sequences ... ok
[INFO] [stdout] test writer::data_container::compression_header::preservation_map::tests::test_write_tag_ids_dictionary ... ok
[INFO] [stdout] test writer::num::vlq::tests::test_write_uint7 ... ok
[INFO] [stdout] test writer::tests::test_add_missing_reference_sequence_checksums ... ok
[INFO] [stdout] test crai::reader::tests::test_read_index ... ok
[INFO] [stdout] test writer::header_container::tests::test_write_header_container ... ok
[INFO] [stdout] test codecs::rans_4x8::tests::test_self_1 ... ok
[INFO] [stdout] test codecs::rans_4x8::decode::tests::test_decode_with_order_1 ... ok
[INFO] [stdout] test codecs::fqzcomp::encode::tests::test_encode_with_do_len ... ok
[INFO] [stdout] test codecs::fqzcomp::encode::tests::test_encode ... ok
[INFO] [stdout] test codecs::fqzcomp::decode::tests::test_decode ... ok
[INFO] [stdout] test codecs::fqzcomp::tests::test_self ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 180 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.15s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests noodles-cram
[INFO] [stdout] 
[INFO] [stdout] running 72 tests
[INFO] [stdout] test src/crai.rs - crai::read (line 27) - compile ... ok
[INFO] [stdout] test src/crai.rs - crai::write (line 48) - compile ... ok
[INFO] [stdout] test src/crai/reader.rs - crai::reader::Reader<R>::read_index (line 37) - compile ... ok
[INFO] [stderr] error: doctest failed, to rerun pass `--doc`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/beta-2024-02-10-x86_64-unknown-linux-gnu/bin/rustdoc --edition=2021 --crate-type lib --crate-name noodles_cram --test src/lib.rs --test-run-directory /opt/rustwide/workdir -L dependency=/opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps -L native=/opt/rustwide/target/debug/build/bzip2-sys-c6cbd56ee67d9657/out/lib -L native=/usr/lib/x86_64-linux-gnu --extern bitflags=/opt/rustwide/target/debug/deps/libbitflags-6980f60bff054089.rlib --extern byteorder=/opt/rustwide/target/debug/deps/libbyteorder-0ef92d8cf14cf0b1.rlib --extern bytes=/opt/rustwide/target/debug/deps/libbytes-d5ef6100ae69ca23.rlib --extern bzip2=/opt/rustwide/target/debug/deps/libbzip2-4789b403a6783495.rlib --extern flate2=/opt/rustwide/target/debug/deps/libflate2-baf52d1f8463a2cd.rlib --extern md5=/opt/rustwide/target/debug/deps/libmd5-676ea291bec4a5f9.rlib --extern noodles_bam=/opt/rustwide/target/debug/deps/libnoodles_bam-fa190bdfbea66043.rlib --extern noodles_core=/opt/rustwide/target/debug/deps/libnoodles_core-9de5d69e38ce0614.rlib --extern noodles_cram=/opt/rustwide/target/debug/deps/libnoodles_cram-af5e2ebc9d9f14f8.rlib --extern noodles_fasta=/opt/rustwide/target/debug/deps/libnoodles_fasta-db9c0d91dfab6537.rlib --extern noodles_sam=/opt/rustwide/target/debug/deps/libnoodles_sam-f8e0358acd431202.rlib --extern tokio=/opt/rustwide/target/debug/deps/libtokio-5f8603f9237bc012.rlib --extern xz2=/opt/rustwide/target/debug/deps/libxz2-404109ff5781b7b1.rlib -C embed-bitcode=no --cap-lints=warn --error-format human` (signal: 9, SIGKILL: kill)
[INFO] running `Command { std: "docker" "inspect" "3b96a27b19820996008b0fe369a910b8bad23fa91089494ba164650f3f2b096b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "3b96a27b19820996008b0fe369a910b8bad23fa91089494ba164650f3f2b096b", kill_on_drop: false }`
[INFO] [stdout] 3b96a27b19820996008b0fe369a910b8bad23fa91089494ba164650f3f2b096b
