[INFO] fetching crate libprosic 0.7.3...
[INFO] testing libprosic-0.7.3 against 1.76.0 for beta-1.77-1
[INFO] extracting crate libprosic 0.7.3 into /workspace/builds/worker-1-tc1/source
[INFO] validating manifest of crates.io crate libprosic 0.7.3 on toolchain 1.76.0
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[INFO] started tweaking crates.io crate libprosic 0.7.3
[INFO] finished tweaking crates.io crate libprosic 0.7.3
[INFO] tweaked toml for crates.io crate libprosic 0.7.3 written to /workspace/builds/worker-1-tc1/source/Cargo.toml
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.76.0" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
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[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:62:20
[INFO] [stdout]    |
[INFO] [stdout] 62 |     let variants = try!(utils::collect_variants(
[INFO] [stdout]    |                    ^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:70:21
[INFO] [stdout]    |
[INFO] [stdout] 70 |     let chrom_seq = try!(reference_buffer.seq(&chrom));
[INFO] [stdout]    |                     ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:75:18
[INFO] [stdout]    |
[INFO] [stdout] 75 |             Some(try!(joint_model.pileup(
[INFO] [stdout]    |                  ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/call/pairwise.rs:159:26
[INFO] [stdout]     |
[INFO] [stdout] 159 |         let mut writer = try!(csv::WriterBuilder::new()
[INFO] [stdout]     |                          ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/model/sample.rs:76:17
[INFO] [stdout]    |
[INFO] [stdout] 76 |                 try!(self.reader.fetch(tid, window_start, end));
[INFO] [stdout]    |                 ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred
[INFO] [stdout]    --> src/model/evidence/reads.rs:335:1
[INFO] [stdout]     |
[INFO] [stdout] 335 | / lazy_static! {
[INFO] [stdout] 336 | |     static ref PROB_CONFUSION: LogProb = LogProb::from(Prob(0.3333));
[INFO] [stdout] 337 | | }
[INFO] [stdout]     | |_^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this warning originates in the macro `__lazy_static_create` which comes from the expansion of the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred
[INFO] [stdout]   --> src/model/priors/single_cell_bulk.rs:26:1
[INFO] [stdout]    |
[INFO] [stdout] 26 | / cached! {
[INFO] [stdout] 27 | |     AMPLIF_CACHE: UnboundCache<(AlleleFreq, usize, usize), LogProb> = UnboundCache::new();
[INFO] [stdout] 28 | |     // Lodato et al. 2015, Science, Supplementary Information, pages 8f and Fig. S5 (A, C, E)
[INFO] [stdout] 29 | |     // TODO: allow for non-default Lodato model parameters, e.g. learned from the data at hand
[INFO] [stdout] ...  |
[INFO] [stdout] 96 | |     }
[INFO] [stdout] 97 | | }
[INFO] [stdout]    | |_^
[INFO] [stdout]    |
[INFO] [stdout]    = note: this warning originates in the macro `__lazy_static_create` which comes from the expansion of the macro `cached` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/call/pairwise.rs:55:62
[INFO] [stdout]    |
[INFO] [stdout] 55 | ) -> Result<Vec<Option<model::PairPileup<'a, A, B, P>>>, Box<Error>>
[INFO] [stdout]    |                                                              ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout]    = note: `#[warn(bare_trait_objects)]` on by default
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 55 | ) -> Result<Vec<Option<model::PairPileup<'a, A, B, P>>>, Box<dyn Error>>
[INFO] [stdout]    |                                                              +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/call/pairwise.rs:116:21
[INFO] [stdout]     |
[INFO] [stdout] 116 | ) -> Result<(), Box<Error>>
[INFO] [stdout]     |                     ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 116 | ) -> Result<(), Box<dyn Error>>
[INFO] [stdout]     |                     +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/estimation/alignment_properties.rs:40:68
[INFO] [stdout]    |
[INFO] [stdout] 40 |     pub fn estimate<R: bam::Read>(bam: &mut R) -> Result<Self, Box<Error>> {
[INFO] [stdout]    |                                                                    ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 40 |     pub fn estimate<R: bam::Read>(bam: &mut R) -> Result<Self, Box<dyn Error>> {
[INFO] [stdout]    |                                                                    +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/estimation/alignment_properties.rs:142:33
[INFO] [stdout]     |
[INFO] [stdout] 142 |     ) -> Result<InsertSize, Box<Error>> {
[INFO] [stdout]     |                                 ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 142 |     ) -> Result<InsertSize, Box<dyn Error>> {
[INFO] [stdout]     |                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/estimation/fdr/ev.rs:35:21
[INFO] [stdout]    |
[INFO] [stdout] 35 | ) -> Result<(), Box<Error>>
[INFO] [stdout]    |                     ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 35 | ) -> Result<(), Box<dyn Error>>
[INFO] [stdout]    |                     +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/mod.rs:275:41
[INFO] [stdout]     |
[INFO] [stdout] 275 |     ) -> Result<SinglePileup<A, P>, Box<Error>> {
[INFO] [stdout]     |                                         ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 275 |     ) -> Result<SinglePileup<A, P>, Box<dyn Error>> {
[INFO] [stdout]     |                                         +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/mod.rs:416:42
[INFO] [stdout]     |
[INFO] [stdout] 416 |     ) -> Result<PairPileup<A, B, P>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 416 |     ) -> Result<PairPileup<A, B, P>, Box<dyn Error>> {
[INFO] [stdout]     |                                          +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/fragments.rs:52:89
[INFO] [stdout]    |
[INFO] [stdout] 52 | pub fn estimate_insert_size(left: &bam::Record, right: &bam::Record) -> Result<u32, Box<Error>> {
[INFO] [stdout]    |                                                                                         ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 52 | pub fn estimate_insert_size(left: &bam::Record, right: &bam::Record) -> Result<u32, Box<dyn Error>> {
[INFO] [stdout]    |                                                                                         +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/fragments.rs:120:41
[INFO] [stdout]     |
[INFO] [stdout] 120 |     ) -> Result<(LogProb, LogProb), Box<Error>> {
[INFO] [stdout]     |                                         ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 120 |     ) -> Result<(LogProb, LogProb), Box<dyn Error>> {
[INFO] [stdout]     |                                         +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/reads.rs:30:49
[INFO] [stdout]    |
[INFO] [stdout] 30 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>>;
[INFO] [stdout]    |                                                 ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 30 |     ) -> Result<Option<(LogProb, LogProb)>, Box<dyn Error>>;
[INFO] [stdout]    |                                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/reads.rs:56:49
[INFO] [stdout]    |
[INFO] [stdout] 56 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]    |                                                 ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 56 |     ) -> Result<Option<(LogProb, LogProb)>, Box<dyn Error>> {
[INFO] [stdout]    |                                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/reads.rs:101:49
[INFO] [stdout]     |
[INFO] [stdout] 101 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]     |                                                 ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 101 |     ) -> Result<Option<(LogProb, LogProb)>, Box<dyn Error>> {
[INFO] [stdout]     |                                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/reads.rs:169:49
[INFO] [stdout]     |
[INFO] [stdout] 169 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]     |                                                 ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 169 |     ) -> Result<Option<(LogProb, LogProb)>, Box<dyn Error>> {
[INFO] [stdout]     |                                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/sample.rs:68:82
[INFO] [stdout]    |
[INFO] [stdout] 68 |     pub fn fill(&mut self, chrom: &[u8], start: u32, end: u32) -> Result<(), Box<Error>> {
[INFO] [stdout]    |                                                                                  ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 68 |     pub fn fill(&mut self, chrom: &[u8], start: u32, end: u32) -> Result<(), Box<dyn Error>> {
[INFO] [stdout]    |                                                                                  +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:220:39
[INFO] [stdout]     |
[INFO] [stdout] 220 |     ) -> Result<Vec<Observation>, Box<Error>> {
[INFO] [stdout]     |                                       ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 220 |     ) -> Result<Vec<Observation>, Box<dyn Error>> {
[INFO] [stdout]     |                                       +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:362:42
[INFO] [stdout]     |
[INFO] [stdout] 362 |     ) -> Result<Option<Observation>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 362 |     ) -> Result<Option<Observation>, Box<dyn Error>> {
[INFO] [stdout]     |                                          +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:409:42
[INFO] [stdout]     |
[INFO] [stdout] 409 |     ) -> Result<Option<Observation>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 409 |     ) -> Result<Option<Observation>, Box<dyn Error>> {
[INFO] [stdout]     |                                          +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/utils.rs:27:46
[INFO] [stdout]    |
[INFO] [stdout] 27 | ) -> Result<Vec<Option<model::Variant>>, Box<Error>> {
[INFO] [stdout]    |                                              ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 27 | ) -> Result<Vec<Option<model::Variant>>, Box<dyn Error>> {
[INFO] [stdout]    |                                              +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:232:39
[INFO] [stdout]     |
[INFO] [stdout] 232 | ) -> Result<Vec<Option<LogProb>>, Box<Error>> {
[INFO] [stdout]     |                                       ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 232 | ) -> Result<Vec<Option<LogProb>>, Box<dyn Error>> {
[INFO] [stdout]     |                                       +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:276:35
[INFO] [stdout]     |
[INFO] [stdout] 276 | ) -> Result<Vec<NotNan<f64>>, Box<Error>> {
[INFO] [stdout]     |                                   ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 276 | ) -> Result<Vec<NotNan<f64>>, Box<dyn Error>> {
[INFO] [stdout]     |                                   +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:317:21
[INFO] [stdout]     |
[INFO] [stdout] 317 | ) -> Result<(), Box<Error>> {
[INFO] [stdout]     |                     ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 317 | ) -> Result<(), Box<dyn Error>> {
[INFO] [stdout]     |                     +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:204:62
[INFO] [stdout]     |
[INFO] [stdout] 204 |     pub fn seq(&mut self, chrom: &[u8]) -> Result<&[u8], Box<Error>> {
[INFO] [stdout]     |                                                              ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 204 |     pub fn seq(&mut self, chrom: &[u8]) -> Result<&[u8], Box<dyn Error>> {
[INFO] [stdout]     |                                                              +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:367:30
[INFO] [stdout]     |
[INFO] [stdout] 367 |     ) -> Result<Overlap, Box<Error>> {
[INFO] [stdout]     |                              ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 367 |     ) -> Result<Overlap, Box<dyn Error>> {
[INFO] [stdout]     |                              +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/fragments.rs:56:68
[INFO] [stdout]    |
[INFO] [stdout] 56 |     let aln = |rec: &bam::Record, cigar| -> Result<(u32, u32), Box<Error>> {
[INFO] [stdout]    |                                                                    ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 56 |     let aln = |rec: &bam::Record, cigar| -> Result<(u32, u32), Box<dyn Error>> {
[INFO] [stdout]    |                                                                    +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:363:34
[INFO] [stdout]     |
[INFO] [stdout] 363 |         let mut evidence: RefMut<evidence::reads::AbstractReadEvidence> = match variant {
[INFO] [stdout]     |                                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 363 |         let mut evidence: RefMut<dyn evidence::reads::AbstractReadEvidence> = match variant {
[INFO] [stdout]     |                                  +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:412:44
[INFO] [stdout]     |
[INFO] [stdout] 412 |          -> Result<(LogProb, LogProb), Box<Error>> {
[INFO] [stdout]     |                                            ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 412 |          -> Result<(LogProb, LogProb), Box<dyn Error>> {
[INFO] [stdout]     |                                            +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 33 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1m 19s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nom v3.2.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
[INFO] running `Command { std: "docker" "inspect" "9425f481c6125988871de6b7c7bd01783874d9a79e109d80757150171b9c9dfd", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "9425f481c6125988871de6b7c7bd01783874d9a79e109d80757150171b9c9dfd", kill_on_drop: false }`
[INFO] [stdout] 9425f481c6125988871de6b7c7bd01783874d9a79e109d80757150171b9c9dfd
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+1.76.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 088d9e6fd5a5962a04ea6531e747af0fe22d111e85faa2e019545926aba44015
[INFO] running `Command { std: "docker" "start" "-a" "088d9e6fd5a5962a04ea6531e747af0fe22d111e85faa2e019545926aba44015", kill_on_drop: false }`
[INFO] [stderr]    Compiling winapi-build v0.1.1
[INFO] [stderr]    Compiling winapi v0.2.8
[INFO] [stderr]    Compiling version_check v0.1.5
[INFO] [stderr]    Compiling memchr v0.1.11
[INFO] [stderr]    Compiling miniz-sys v0.1.12
[INFO] [stderr]    Compiling httparse v1.8.0
[INFO] [stderr]    Compiling utf8-ranges v0.1.3
[INFO] [stderr]    Compiling safemem v0.3.3
[INFO] [stderr]    Compiling regex-syntax v0.3.9
[INFO] [stderr]    Compiling aho-corasick v0.5.3
[INFO] [stderr]    Compiling base64 v0.9.3
[INFO] [stderr]    Compiling kernel32-sys v0.2.2
[INFO] [stderr]    Compiling unicase v1.4.2
[INFO] [stderr]    Compiling mime v0.2.6
[INFO] [stderr]    Compiling num_cpus v1.16.0
[INFO] [stderr]    Compiling time v0.1.45
[INFO] [stderr]    Compiling thread-id v2.0.0
[INFO] [stderr]    Compiling thread_local v0.2.7
[INFO] [stderr]    Compiling language-tags v0.2.2
[INFO] [stderr]    Compiling typeable v0.1.2
[INFO] [stderr]    Compiling traitobject v0.1.0
[INFO] [stderr]    Compiling fern v0.4.4
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:62:20
[INFO] [stdout]    |
[INFO] [stdout] 62 |     let variants = try!(utils::collect_variants(
[INFO] [stdout]    |                    ^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:70:21
[INFO] [stdout]    |
[INFO] [stdout] 70 |     let chrom_seq = try!(reference_buffer.seq(&chrom));
[INFO] [stdout]    |                     ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:75:18
[INFO] [stdout]    |
[INFO] [stdout] 75 |             Some(try!(joint_model.pileup(
[INFO] [stdout]    |                  ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/call/pairwise.rs:159:26
[INFO] [stdout]     |
[INFO] [stdout] 159 |         let mut writer = try!(csv::WriterBuilder::new()
[INFO] [stdout]     |                          ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/model/sample.rs:76:17
[INFO] [stdout]    |
[INFO] [stdout] 76 |                 try!(self.reader.fetch(tid, window_start, end));
[INFO] [stdout]    |                 ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred
[INFO] [stdout]    --> src/model/evidence/reads.rs:335:1
[INFO] [stdout]     |
[INFO] [stdout] 335 | / lazy_static! {
[INFO] [stdout] 336 | |     static ref PROB_CONFUSION: LogProb = LogProb::from(Prob(0.3333));
[INFO] [stdout] 337 | | }
[INFO] [stdout]     | |_^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this warning originates in the macro `__lazy_static_create` which comes from the expansion of the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred
[INFO] [stdout]   --> src/model/priors/single_cell_bulk.rs:26:1
[INFO] [stdout]    |
[INFO] [stdout] 26 | / cached! {
[INFO] [stdout] 27 | |     AMPLIF_CACHE: UnboundCache<(AlleleFreq, usize, usize), LogProb> = UnboundCache::new();
[INFO] [stdout] 28 | |     // Lodato et al. 2015, Science, Supplementary Information, pages 8f and Fig. S5 (A, C, E)
[INFO] [stdout] 29 | |     // TODO: allow for non-default Lodato model parameters, e.g. learned from the data at hand
[INFO] [stdout] ...  |
[INFO] [stdout] 96 | |     }
[INFO] [stdout] 97 | | }
[INFO] [stdout]    | |_^
[INFO] [stdout]    |
[INFO] [stdout]    = note: this warning originates in the macro `__lazy_static_create` which comes from the expansion of the macro `cached` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/call/pairwise.rs:55:62
[INFO] [stdout]    |
[INFO] [stdout] 55 | ) -> Result<Vec<Option<model::PairPileup<'a, A, B, P>>>, Box<Error>>
[INFO] [stdout]    |                                                              ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout]    = note: `#[warn(bare_trait_objects)]` on by default
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 55 | ) -> Result<Vec<Option<model::PairPileup<'a, A, B, P>>>, Box<dyn Error>>
[INFO] [stdout]    |                                                              +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/call/pairwise.rs:116:21
[INFO] [stdout]     |
[INFO] [stdout] 116 | ) -> Result<(), Box<Error>>
[INFO] [stdout]     |                     ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 116 | ) -> Result<(), Box<dyn Error>>
[INFO] [stdout]     |                     +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/estimation/alignment_properties.rs:40:68
[INFO] [stdout]    |
[INFO] [stdout] 40 |     pub fn estimate<R: bam::Read>(bam: &mut R) -> Result<Self, Box<Error>> {
[INFO] [stdout]    |                                                                    ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 40 |     pub fn estimate<R: bam::Read>(bam: &mut R) -> Result<Self, Box<dyn Error>> {
[INFO] [stdout]    |                                                                    +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/estimation/alignment_properties.rs:142:33
[INFO] [stdout]     |
[INFO] [stdout] 142 |     ) -> Result<InsertSize, Box<Error>> {
[INFO] [stdout]     |                                 ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 142 |     ) -> Result<InsertSize, Box<dyn Error>> {
[INFO] [stdout]     |                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/estimation/fdr/ev.rs:35:21
[INFO] [stdout]    |
[INFO] [stdout] 35 | ) -> Result<(), Box<Error>>
[INFO] [stdout]    |                     ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 35 | ) -> Result<(), Box<dyn Error>>
[INFO] [stdout]    |                     +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/mod.rs:275:41
[INFO] [stdout]     |
[INFO] [stdout] 275 |     ) -> Result<SinglePileup<A, P>, Box<Error>> {
[INFO] [stdout]     |                                         ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 275 |     ) -> Result<SinglePileup<A, P>, Box<dyn Error>> {
[INFO] [stdout]     |                                         +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/mod.rs:416:42
[INFO] [stdout]     |
[INFO] [stdout] 416 |     ) -> Result<PairPileup<A, B, P>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 416 |     ) -> Result<PairPileup<A, B, P>, Box<dyn Error>> {
[INFO] [stdout]     |                                          +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/fragments.rs:52:89
[INFO] [stdout]    |
[INFO] [stdout] 52 | pub fn estimate_insert_size(left: &bam::Record, right: &bam::Record) -> Result<u32, Box<Error>> {
[INFO] [stdout]    |                                                                                         ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 52 | pub fn estimate_insert_size(left: &bam::Record, right: &bam::Record) -> Result<u32, Box<dyn Error>> {
[INFO] [stdout]    |                                                                                         +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/fragments.rs:120:41
[INFO] [stdout]     |
[INFO] [stdout] 120 |     ) -> Result<(LogProb, LogProb), Box<Error>> {
[INFO] [stdout]     |                                         ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 120 |     ) -> Result<(LogProb, LogProb), Box<dyn Error>> {
[INFO] [stdout]     |                                         +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/reads.rs:30:49
[INFO] [stdout]    |
[INFO] [stdout] 30 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>>;
[INFO] [stdout]    |                                                 ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 30 |     ) -> Result<Option<(LogProb, LogProb)>, Box<dyn Error>>;
[INFO] [stdout]    |                                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/reads.rs:56:49
[INFO] [stdout]    |
[INFO] [stdout] 56 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]    |                                                 ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 56 |     ) -> Result<Option<(LogProb, LogProb)>, Box<dyn Error>> {
[INFO] [stdout]    |                                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/reads.rs:101:49
[INFO] [stdout]     |
[INFO] [stdout] 101 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]     |                                                 ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 101 |     ) -> Result<Option<(LogProb, LogProb)>, Box<dyn Error>> {
[INFO] [stdout]     |                                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/reads.rs:169:49
[INFO] [stdout]     |
[INFO] [stdout] 169 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]     |                                                 ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 169 |     ) -> Result<Option<(LogProb, LogProb)>, Box<dyn Error>> {
[INFO] [stdout]     |                                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/sample.rs:68:82
[INFO] [stdout]    |
[INFO] [stdout] 68 |     pub fn fill(&mut self, chrom: &[u8], start: u32, end: u32) -> Result<(), Box<Error>> {
[INFO] [stdout]    |                                                                                  ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 68 |     pub fn fill(&mut self, chrom: &[u8], start: u32, end: u32) -> Result<(), Box<dyn Error>> {
[INFO] [stdout]    |                                                                                  +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:220:39
[INFO] [stdout]     |
[INFO] [stdout] 220 |     ) -> Result<Vec<Observation>, Box<Error>> {
[INFO] [stdout]     |                                       ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 220 |     ) -> Result<Vec<Observation>, Box<dyn Error>> {
[INFO] [stdout]     |                                       +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:362:42
[INFO] [stdout]     |
[INFO] [stdout] 362 |     ) -> Result<Option<Observation>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 362 |     ) -> Result<Option<Observation>, Box<dyn Error>> {
[INFO] [stdout]     |                                          +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:409:42
[INFO] [stdout]     |
[INFO] [stdout] 409 |     ) -> Result<Option<Observation>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 409 |     ) -> Result<Option<Observation>, Box<dyn Error>> {
[INFO] [stdout]     |                                          +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/utils.rs:27:46
[INFO] [stdout]    |
[INFO] [stdout] 27 | ) -> Result<Vec<Option<model::Variant>>, Box<Error>> {
[INFO] [stdout]    |                                              ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 27 | ) -> Result<Vec<Option<model::Variant>>, Box<dyn Error>> {
[INFO] [stdout]    |                                              +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:232:39
[INFO] [stdout]     |
[INFO] [stdout] 232 | ) -> Result<Vec<Option<LogProb>>, Box<Error>> {
[INFO] [stdout]     |                                       ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 232 | ) -> Result<Vec<Option<LogProb>>, Box<dyn Error>> {
[INFO] [stdout]     |                                       +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:276:35
[INFO] [stdout]     |
[INFO] [stdout] 276 | ) -> Result<Vec<NotNan<f64>>, Box<Error>> {
[INFO] [stdout]     |                                   ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 276 | ) -> Result<Vec<NotNan<f64>>, Box<dyn Error>> {
[INFO] [stdout]     |                                   +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:317:21
[INFO] [stdout]     |
[INFO] [stdout] 317 | ) -> Result<(), Box<Error>> {
[INFO] [stdout]     |                     ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 317 | ) -> Result<(), Box<dyn Error>> {
[INFO] [stdout]     |                     +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:204:62
[INFO] [stdout]     |
[INFO] [stdout] 204 |     pub fn seq(&mut self, chrom: &[u8]) -> Result<&[u8], Box<Error>> {
[INFO] [stdout]     |                                                              ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 204 |     pub fn seq(&mut self, chrom: &[u8]) -> Result<&[u8], Box<dyn Error>> {
[INFO] [stdout]     |                                                              +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:367:30
[INFO] [stdout]     |
[INFO] [stdout] 367 |     ) -> Result<Overlap, Box<Error>> {
[INFO] [stdout]     |                              ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 367 |     ) -> Result<Overlap, Box<dyn Error>> {
[INFO] [stdout]     |                              +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/fragments.rs:56:68
[INFO] [stdout]    |
[INFO] [stdout] 56 |     let aln = |rec: &bam::Record, cigar| -> Result<(u32, u32), Box<Error>> {
[INFO] [stdout]    |                                                                    ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 56 |     let aln = |rec: &bam::Record, cigar| -> Result<(u32, u32), Box<dyn Error>> {
[INFO] [stdout]    |                                                                    +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:363:34
[INFO] [stdout]     |
[INFO] [stdout] 363 |         let mut evidence: RefMut<evidence::reads::AbstractReadEvidence> = match variant {
[INFO] [stdout]     |                                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 363 |         let mut evidence: RefMut<dyn evidence::reads::AbstractReadEvidence> = match variant {
[INFO] [stdout]     |                                  +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:412:44
[INFO] [stdout]     |
[INFO] [stdout] 412 |          -> Result<(LogProb, LogProb), Box<Error>> {
[INFO] [stdout]     |                                            ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 412 |          -> Result<(LogProb, LogProb), Box<dyn Error>> {
[INFO] [stdout]     |                                            +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 33 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]    Compiling regex v0.1.80
[INFO] [stderr]    Compiling hyper v0.10.16
[INFO] [stderr]    Compiling flate2 v0.2.20
[INFO] [stderr]    Compiling env_logger v0.3.5
[INFO] [stderr]    Compiling libprosic v0.7.3 (/opt/rustwide/workdir)
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:62:20
[INFO] [stdout]    |
[INFO] [stdout] 62 |     let variants = try!(utils::collect_variants(
[INFO] [stdout]    |                    ^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:70:21
[INFO] [stdout]    |
[INFO] [stdout] 70 |     let chrom_seq = try!(reference_buffer.seq(&chrom));
[INFO] [stdout]    |                     ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:75:18
[INFO] [stdout]    |
[INFO] [stdout] 75 |             Some(try!(joint_model.pileup(
[INFO] [stdout]    |                  ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/call/pairwise.rs:159:26
[INFO] [stdout]     |
[INFO] [stdout] 159 |         let mut writer = try!(csv::WriterBuilder::new()
[INFO] [stdout]     |                          ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/model/sample.rs:76:17
[INFO] [stdout]    |
[INFO] [stdout] 76 |                 try!(self.reader.fetch(tid, window_start, end));
[INFO] [stdout]    |                 ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred
[INFO] [stdout]    --> src/model/evidence/reads.rs:335:1
[INFO] [stdout]     |
[INFO] [stdout] 335 | / lazy_static! {
[INFO] [stdout] 336 | |     static ref PROB_CONFUSION: LogProb = LogProb::from(Prob(0.3333));
[INFO] [stdout] 337 | | }
[INFO] [stdout]     | |_^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this warning originates in the macro `__lazy_static_create` which comes from the expansion of the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred
[INFO] [stdout]   --> src/model/priors/single_cell_bulk.rs:26:1
[INFO] [stdout]    |
[INFO] [stdout] 26 | / cached! {
[INFO] [stdout] 27 | |     AMPLIF_CACHE: UnboundCache<(AlleleFreq, usize, usize), LogProb> = UnboundCache::new();
[INFO] [stdout] 28 | |     // Lodato et al. 2015, Science, Supplementary Information, pages 8f and Fig. S5 (A, C, E)
[INFO] [stdout] 29 | |     // TODO: allow for non-default Lodato model parameters, e.g. learned from the data at hand
[INFO] [stdout] ...  |
[INFO] [stdout] 96 | |     }
[INFO] [stdout] 97 | | }
[INFO] [stdout]    | |_^
[INFO] [stdout]    |
[INFO] [stdout]    = note: this warning originates in the macro `__lazy_static_create` which comes from the expansion of the macro `cached` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/call/pairwise.rs:55:62
[INFO] [stdout]    |
[INFO] [stdout] 55 | ) -> Result<Vec<Option<model::PairPileup<'a, A, B, P>>>, Box<Error>>
[INFO] [stdout]    |                                                              ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout]    = note: `#[warn(bare_trait_objects)]` on by default
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 55 | ) -> Result<Vec<Option<model::PairPileup<'a, A, B, P>>>, Box<dyn Error>>
[INFO] [stdout]    |                                                              +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/call/pairwise.rs:116:21
[INFO] [stdout]     |
[INFO] [stdout] 116 | ) -> Result<(), Box<Error>>
[INFO] [stdout]     |                     ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 116 | ) -> Result<(), Box<dyn Error>>
[INFO] [stdout]     |                     +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/estimation/alignment_properties.rs:40:68
[INFO] [stdout]    |
[INFO] [stdout] 40 |     pub fn estimate<R: bam::Read>(bam: &mut R) -> Result<Self, Box<Error>> {
[INFO] [stdout]    |                                                                    ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 40 |     pub fn estimate<R: bam::Read>(bam: &mut R) -> Result<Self, Box<dyn Error>> {
[INFO] [stdout]    |                                                                    +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/estimation/alignment_properties.rs:142:33
[INFO] [stdout]     |
[INFO] [stdout] 142 |     ) -> Result<InsertSize, Box<Error>> {
[INFO] [stdout]     |                                 ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 142 |     ) -> Result<InsertSize, Box<dyn Error>> {
[INFO] [stdout]     |                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/estimation/fdr/ev.rs:35:21
[INFO] [stdout]    |
[INFO] [stdout] 35 | ) -> Result<(), Box<Error>>
[INFO] [stdout]    |                     ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 35 | ) -> Result<(), Box<dyn Error>>
[INFO] [stdout]    |                     +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/mod.rs:275:41
[INFO] [stdout]     |
[INFO] [stdout] 275 |     ) -> Result<SinglePileup<A, P>, Box<Error>> {
[INFO] [stdout]     |                                         ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 275 |     ) -> Result<SinglePileup<A, P>, Box<dyn Error>> {
[INFO] [stdout]     |                                         +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/mod.rs:416:42
[INFO] [stdout]     |
[INFO] [stdout] 416 |     ) -> Result<PairPileup<A, B, P>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 416 |     ) -> Result<PairPileup<A, B, P>, Box<dyn Error>> {
[INFO] [stdout]     |                                          +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/fragments.rs:52:89
[INFO] [stdout]    |
[INFO] [stdout] 52 | pub fn estimate_insert_size(left: &bam::Record, right: &bam::Record) -> Result<u32, Box<Error>> {
[INFO] [stdout]    |                                                                                         ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 52 | pub fn estimate_insert_size(left: &bam::Record, right: &bam::Record) -> Result<u32, Box<dyn Error>> {
[INFO] [stdout]    |                                                                                         +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/fragments.rs:120:41
[INFO] [stdout]     |
[INFO] [stdout] 120 |     ) -> Result<(LogProb, LogProb), Box<Error>> {
[INFO] [stdout]     |                                         ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 120 |     ) -> Result<(LogProb, LogProb), Box<dyn Error>> {
[INFO] [stdout]     |                                         +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/reads.rs:30:49
[INFO] [stdout]    |
[INFO] [stdout] 30 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>>;
[INFO] [stdout]    |                                                 ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 30 |     ) -> Result<Option<(LogProb, LogProb)>, Box<dyn Error>>;
[INFO] [stdout]    |                                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/reads.rs:56:49
[INFO] [stdout]    |
[INFO] [stdout] 56 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]    |                                                 ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 56 |     ) -> Result<Option<(LogProb, LogProb)>, Box<dyn Error>> {
[INFO] [stdout]    |                                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/reads.rs:101:49
[INFO] [stdout]     |
[INFO] [stdout] 101 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]     |                                                 ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 101 |     ) -> Result<Option<(LogProb, LogProb)>, Box<dyn Error>> {
[INFO] [stdout]     |                                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/reads.rs:169:49
[INFO] [stdout]     |
[INFO] [stdout] 169 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]     |                                                 ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 169 |     ) -> Result<Option<(LogProb, LogProb)>, Box<dyn Error>> {
[INFO] [stdout]     |                                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/sample.rs:68:82
[INFO] [stdout]    |
[INFO] [stdout] 68 |     pub fn fill(&mut self, chrom: &[u8], start: u32, end: u32) -> Result<(), Box<Error>> {
[INFO] [stdout]    |                                                                                  ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 68 |     pub fn fill(&mut self, chrom: &[u8], start: u32, end: u32) -> Result<(), Box<dyn Error>> {
[INFO] [stdout]    |                                                                                  +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:220:39
[INFO] [stdout]     |
[INFO] [stdout] 220 |     ) -> Result<Vec<Observation>, Box<Error>> {
[INFO] [stdout]     |                                       ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 220 |     ) -> Result<Vec<Observation>, Box<dyn Error>> {
[INFO] [stdout]     |                                       +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:362:42
[INFO] [stdout]     |
[INFO] [stdout] 362 |     ) -> Result<Option<Observation>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 362 |     ) -> Result<Option<Observation>, Box<dyn Error>> {
[INFO] [stdout]     |                                          +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:409:42
[INFO] [stdout]     |
[INFO] [stdout] 409 |     ) -> Result<Option<Observation>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 409 |     ) -> Result<Option<Observation>, Box<dyn Error>> {
[INFO] [stdout]     |                                          +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/utils.rs:27:46
[INFO] [stdout]    |
[INFO] [stdout] 27 | ) -> Result<Vec<Option<model::Variant>>, Box<Error>> {
[INFO] [stdout]    |                                              ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 27 | ) -> Result<Vec<Option<model::Variant>>, Box<dyn Error>> {
[INFO] [stdout]    |                                              +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:232:39
[INFO] [stdout]     |
[INFO] [stdout] 232 | ) -> Result<Vec<Option<LogProb>>, Box<Error>> {
[INFO] [stdout]     |                                       ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 232 | ) -> Result<Vec<Option<LogProb>>, Box<dyn Error>> {
[INFO] [stdout]     |                                       +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:276:35
[INFO] [stdout]     |
[INFO] [stdout] 276 | ) -> Result<Vec<NotNan<f64>>, Box<Error>> {
[INFO] [stdout]     |                                   ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 276 | ) -> Result<Vec<NotNan<f64>>, Box<dyn Error>> {
[INFO] [stdout]     |                                   +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:317:21
[INFO] [stdout]     |
[INFO] [stdout] 317 | ) -> Result<(), Box<Error>> {
[INFO] [stdout]     |                     ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 317 | ) -> Result<(), Box<dyn Error>> {
[INFO] [stdout]     |                     +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:204:62
[INFO] [stdout]     |
[INFO] [stdout] 204 |     pub fn seq(&mut self, chrom: &[u8]) -> Result<&[u8], Box<Error>> {
[INFO] [stdout]     |                                                              ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 204 |     pub fn seq(&mut self, chrom: &[u8]) -> Result<&[u8], Box<dyn Error>> {
[INFO] [stdout]     |                                                              +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:367:30
[INFO] [stdout]     |
[INFO] [stdout] 367 |     ) -> Result<Overlap, Box<Error>> {
[INFO] [stdout]     |                              ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 367 |     ) -> Result<Overlap, Box<dyn Error>> {
[INFO] [stdout]     |                              +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/fragments.rs:56:68
[INFO] [stdout]    |
[INFO] [stdout] 56 |     let aln = |rec: &bam::Record, cigar| -> Result<(u32, u32), Box<Error>> {
[INFO] [stdout]    |                                                                    ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 56 |     let aln = |rec: &bam::Record, cigar| -> Result<(u32, u32), Box<dyn Error>> {
[INFO] [stdout]    |                                                                    +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:363:34
[INFO] [stdout]     |
[INFO] [stdout] 363 |         let mut evidence: RefMut<evidence::reads::AbstractReadEvidence> = match variant {
[INFO] [stdout]     |                                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 363 |         let mut evidence: RefMut<dyn evidence::reads::AbstractReadEvidence> = match variant {
[INFO] [stdout]     |                                  +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:412:44
[INFO] [stdout]     |
[INFO] [stdout] 412 |          -> Result<(LogProb, LogProb), Box<Error>> {
[INFO] [stdout]     |                                            ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 412 |          -> Result<(LogProb, LogProb), Box<dyn Error>> {
[INFO] [stdout]     |                                            +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: this method call resolves to `<&[T; N] as IntoIterator>::into_iter` (due to backwards compatibility), but will resolve to <[T; N] as IntoIterator>::into_iter in Rust 2021
[INFO] [stdout]    --> src/model/sample.rs:612:79
[INFO] [stdout]     |
[INFO] [stdout] 612 |         for (record, true_alt_prob) in records.into_iter().zip(true_alt_probs.into_iter()) {
[INFO] [stdout]     |                                                                               ^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this changes meaning in Rust 2021
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/IntoIterator-for-arrays.html>
[INFO] [stdout]     = note: `#[warn(array_into_iter)]` on by default
[INFO] [stdout] help: use `.iter()` instead of `.into_iter()` to avoid ambiguity
[INFO] [stdout]     |
[INFO] [stdout] 612 |         for (record, true_alt_prob) in records.into_iter().zip(true_alt_probs.iter()) {
[INFO] [stdout]     |                                                                               ~~~~
[INFO] [stdout] help: or use `IntoIterator::into_iter(..)` instead of `.into_iter()` to explicitly iterate by value
[INFO] [stdout]     |
[INFO] [stdout] 612 |         for (record, true_alt_prob) in records.into_iter().zip(IntoIterator::into_iter(true_alt_probs)) {
[INFO] [stdout]     |                                                                ++++++++++++++++++++++++              ~
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: linking with `cc` failed: exit status: 1
[INFO] [stdout]   |
[INFO] [stdout]   = note: LC_ALL="C" PATH="/opt/rustwide/rustup-home/toolchains/1.76.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/bin:/opt/rustwide/cargo-home/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin" VSLANG="1033" "cc" "-m64" "/tmp/rustc9WnTC5/symbols.o" "/opt/rustwide/target/debug/deps/libprosic-7127359f585d8000.libprosic.a8b8ed422d61ed08-cgu.00.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-7127359f585d8000.libprosic.a8b8ed422d61ed08-cgu.01.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-7127359f585d8000.libprosic.a8b8ed422d61ed08-cgu.02.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-7127359f585d8000.libprosic.a8b8ed422d61ed08-cgu.03.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-7127359f585d8000.libprosic.a8b8ed422d61ed08-cgu.04.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-7127359f585d8000.libprosic.a8b8ed422d61ed08-cgu.05.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-7127359f585d8000.libprosic.a8b8ed422d61ed08-cgu.06.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-7127359f585d8000.libprosic.a8b8ed422d61ed08-cgu.07.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-7127359f585d8000.libprosic.a8b8ed422d61ed08-cgu.08.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-7127359f585d8000.libprosic.a8b8ed422d61ed08-cgu.09.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-7127359f585d8000.libprosic.a8b8ed422d61ed08-cgu.10.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-7127359f585d8000.libprosic.a8b8ed422d61ed08-cgu.11.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-7127359f585d8000.libprosic.a8b8ed422d61ed08-cgu.12.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-7127359f585d8000.libprosic.a8b8ed422d61ed08-cgu.13.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-7127359f585d8000.libprosic.a8b8ed422d61ed08-cgu.14.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-7127359f585d8000.libprosic.a8b8ed422d61ed08-cgu.15.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-7127359f585d8000.1los9hjgddyp5odx.rcgu.o" "-Wl,--as-needed" "-L" "/opt/rustwide/target/debug/deps" "-L" "/opt/rustwide/target/debug/build/miniz-sys-43cadd8fd68bf9d3/out" "-L" "/opt/rustwide/target/debug/build/rust-htslib-cdf240f1fc750f2f/out" "-L" "/opt/rustwide/target/debug/build/bzip2-sys-588c30c2a2f3bd01/out/lib" "-L" "/usr/lib/x86_64-linux-gnu" "-L" "/opt/rustwide/rustup-home/toolchains/1.76.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-Wl,-Bstatic" "/opt/rustwide/rustup-home/toolchains/1.76.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libtest-5d722ce3e5d0595e.rlib" "/opt/rustwide/rustup-home/toolchains/1.76.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libgetopts-76f5006e4e062e57.rlib" "/opt/rustwide/rustup-home/toolchains/1.76.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libunicode_width-a18ed5fdf4a57b72.rlib" "/opt/rustwide/rustup-home/toolchains/1.76.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_std-a14b8d31733ef9e9.rlib" "/opt/rustwide/target/debug/deps/libenv_logger-82cd2e7af3265868.rlib" "/opt/rustwide/target/debug/deps/libregex-c2ca09bc4117e6bd.rlib" "/opt/rustwide/target/debug/deps/libutf8_ranges-2ca1cc4a0607a899.rlib" "/opt/rustwide/target/debug/deps/libregex_syntax-f607cabf37114325.rlib" "/opt/rustwide/target/debug/deps/libthread_local-d3f7dd5ddb9877c9.rlib" "/opt/rustwide/target/debug/deps/libthread_id-1fd4f659dca8b460.rlib" "/opt/rustwide/target/debug/deps/libaho_corasick-689be84de45ba3f9.rlib" "/opt/rustwide/target/debug/deps/libmemchr-98bc62909a24f3de.rlib" "/opt/rustwide/target/debug/deps/libcached-7691fec0e388f16c.rlib" "/opt/rustwide/target/debug/deps/libregex-c1c7af95b2046ccb.rlib" "/opt/rustwide/target/debug/deps/libutf8_ranges-ad6e1a1cddb41f8c.rlib" "/opt/rustwide/target/debug/deps/libregex_syntax-4bda2fa91796bcb1.rlib" "/opt/rustwide/target/debug/deps/libucd_util-39fb095daafcc9bf.rlib" "/opt/rustwide/target/debug/deps/libthread_local-90c0d77ff8fe148e.rlib" "/opt/rustwide/target/debug/deps/libaho_corasick-e7ce5fc70206667d.rlib" "/opt/rustwide/target/debug/deps/librusty_machine-a099fdc9292c16b6.rlib" "/opt/rustwide/target/debug/deps/librulinalg-a600deebffca93bd.rlib" "/opt/rustwide/target/debug/deps/libnum-7ef2db40708413e1.rlib" "/opt/rustwide/target/debug/deps/libnum_iter-3e7019b6c3badd8a.rlib" "/opt/rustwide/target/debug/deps/libndarray-90dcd4a77840f6dd.rlib" "/opt/rustwide/target/debug/deps/libnum_complex-a6b1df9278060295.rlib" "/opt/rustwide/target/debug/deps/libnum_traits-a500c9f63f40b779.rlib" "/opt/rustwide/target/debug/deps/libitertools-d612bc8dd3bd7a19.rlib" "/opt/rustwide/target/debug/deps/libapprox-55a8381d850753f9.rlib" "/opt/rustwide/target/debug/deps/librgsl-fa00de23209fc089.rlib" "/opt/rustwide/target/debug/deps/libc_vec-0e56fb2b1c9512b5.rlib" "/opt/rustwide/target/debug/deps/liblog-e2534e29a14124fa.rlib" "/opt/rustwide/target/debug/deps/liblog-f0b86e21f45e4d82.rlib" "/opt/rustwide/target/debug/deps/librust_htslib-30ce1b6a919e24af.rlib" "/opt/rustwide/target/debug/deps/liblzma_sys-ac074fe5e8160781.rlib" "/opt/rustwide/target/debug/deps/libbzip2_sys-164e8132f292b813.rlib" "/opt/rustwide/target/debug/deps/liblibz_sys-90268267770f0357.rlib" "/opt/rustwide/target/debug/deps/liblinear_map-9baab41ef9fd006a.rlib" "/opt/rustwide/target/debug/deps/liburl-0748bb778bcb505b.rlib" "/opt/rustwide/target/debug/deps/libpercent_encoding-7885a198ab049eda.rlib" "/opt/rustwide/target/debug/deps/libidna-5f8a56c3b7639819.rlib" "/opt/rustwide/target/debug/deps/libunicode_normalization-b9fcd7a9b7218a45.rlib" "/opt/rustwide/target/debug/deps/libtinyvec-86233ffb6e68f55f.rlib" "/opt/rustwide/target/debug/deps/libtinyvec_macros-1f837015341fdbf7.rlib" "/opt/rustwide/target/debug/deps/libunicode_bidi-c474a358d8d11073.rlib" "/opt/rustwide/target/debug/deps/libmatches-927d424a1a39b24f.rlib" "/opt/rustwide/target/debug/deps/liblazy_static-ba885db7f681006f.rlib" "/opt/rustwide/target/debug/deps/libitertools-cf3dfcf9ee560401.rlib" "/opt/rustwide/target/debug/deps/libieee754-853c7d22a0f42595.rlib" "/opt/rustwide/target/debug/deps/libbitflags-6177dbd8bfc054ea.rlib" "/opt/rustwide/target/debug/deps/libbio-78a2328871f5372f.rlib" "/opt/rustwide/target/debug/deps/libfxhash-cde54061635bed1a.rlib" "/opt/rustwide/target/debug/deps/libbyteorder-34348d75f49273e9.rlib" "/opt/rustwide/target/debug/deps/libvec_map-655c7e04bcbb441b.rlib" "/opt/rustwide/target/debug/deps/libstatrs-c51a4ffcd70b09b2.rlib" "/opt/rustwide/target/debug/deps/librand-1938e0b278f43bc5.rlib" "/opt/rustwide/target/debug/deps/librand-a5596a36a5ec2fdc.rlib" "/opt/rustwide/target/debug/deps/liblibc-efa8c33ee3c35829.rlib" "/opt/rustwide/target/debug/deps/libfnv-1c9d80d36ddc3b78.rlib" "/opt/rustwide/target/debug/deps/libbv-63f08f4a00afc8d3.rlib" "/opt/rustwide/target/debug/deps/libquick_error-cfed17cb57fcaefe.rlib" "/opt/rustwide/target/debug/deps/libordered_float-b5c787f625cf6875.rlib" "/opt/rustwide/target/debug/deps/libnum_integer-8969dceadda5f3cd.rlib" "/opt/rustwide/target/debug/deps/libnewtype_derive-d2f43ae52e4387a4.rlib" "/opt/rustwide/target/debug/deps/libndarray-152e3f398dec478e.rlib" "/opt/rustwide/target/debug/deps/libnum_complex-63fa426d26692549.rlib" "/opt/rustwide/target/debug/deps/libmatrixmultiply-48bb1a2e8e9aa041.rlib" "/opt/rustwide/target/debug/deps/librawpointer-8c99f23d2a76b59d.rlib" "/opt/rustwide/target/debug/deps/libmultimap-d0c531135b8bae38.rlib" "/opt/rustwide/target/debug/deps/libitertools_num-d8be6786149f0b7d.rlib" "/opt/rustwide/target/debug/deps/libitertools-c07a61eee9ea1e99.rlib" "/opt/rustwide/target/debug/deps/libeither-6ad2290bc550ee86.rlib" "/opt/rustwide/target/debug/deps/libcustom_derive-b6d3e73f0c7f545d.rlib" "/opt/rustwide/target/debug/deps/libcsv-8705500fb163f2d2.rlib" "/opt/rustwide/target/debug/deps/libryu-e44ebf67d9e1b5dc.rlib" "/opt/rustwide/target/debug/deps/libitoa-6976aa51a2dfe178.rlib" "/opt/rustwide/target/debug/deps/libcsv_core-eaeb0a1d58a67725.rlib" "/opt/rustwide/target/debug/deps/libserde-8b6af91a799f873d.rlib" "/opt/rustwide/target/debug/deps/libbytecount-f694cad58440dd56.rlib" "/opt/rustwide/target/debug/deps/libbit_set-f7d2bf37cc06865b.rlib" "/opt/rustwide/target/debug/deps/libbit_vec-51af7e270c17e705.rlib" "/opt/rustwide/target/debug/deps/libapprox-f430ff2913d0850c.rlib" "/opt/rustwide/target/debug/deps/libnum_traits-924c59f8d3c0a754.rlib" "/opt/rustwide/target/debug/deps/libbio_types-0a03581646953e39.rlib" "/opt/rustwide/target/debug/deps/libthiserror-e9ed62790c58a1f5.rlib" "/opt/rustwide/target/debug/deps/libregex-88a689b253f5adee.rlib" "/opt/rustwide/target/debug/deps/libregex_automata-68d976d82491c7e4.rlib" "/opt/rustwide/target/debug/deps/libaho_corasick-8a0b34de48510441.rlib" "/opt/rustwide/target/debug/deps/libmemchr-9118be60aee6f566.rlib" "/opt/rustwide/target/debug/deps/libregex_syntax-0d266e3910baead0.rlib" "/opt/rustwide/target/debug/deps/liblazy_static-67076bd63a6ff427.rlib" "/opt/rustwide/rustup-home/toolchains/1.76.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libstd-66d8041607d2929b.rlib" "/opt/rustwide/rustup-home/toolchains/1.76.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libpanic_unwind-a57e2388c0aea9b1.rlib" "/opt/rustwide/rustup-home/toolchains/1.76.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libobject-dcd9be90ae2cb505.rlib" "/opt/rustwide/rustup-home/toolchains/1.76.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libmemchr-516789932d161b4e.rlib" "/opt/rustwide/rustup-home/toolchains/1.76.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libaddr2line-1ff34b0cf871cb60.rlib" "/opt/rustwide/rustup-home/toolchains/1.76.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libgimli-0c110dd0650d6cb7.rlib" "/opt/rustwide/rustup-home/toolchains/1.76.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_demangle-a6e97aae2681ad8f.rlib" "/opt/rustwide/rustup-home/toolchains/1.76.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libstd_detect-b93dac2525ec4d1e.rlib" "/opt/rustwide/rustup-home/toolchains/1.76.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libhashbrown-ce1d65fb391ae98b.rlib" "/opt/rustwide/rustup-home/toolchains/1.76.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_alloc-8933a2fb54d88492.rlib" "/opt/rustwide/rustup-home/toolchains/1.76.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libminiz_oxide-306712ebb1ee1a3f.rlib" "/opt/rustwide/rustup-home/toolchains/1.76.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libadler-349c574f342b0d30.rlib" "/opt/rustwide/rustup-home/toolchains/1.76.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libunwind-65c422a3ad95273d.rlib" "/opt/rustwide/rustup-home/toolchains/1.76.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcfg_if-7e6330a6c0cb9441.rlib" "/opt/rustwide/rustup-home/toolchains/1.76.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/liblibc-39c59240bfdfab27.rlib" "/opt/rustwide/rustup-home/toolchains/1.76.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/liballoc-e9d126c51bb8b2bb.rlib" "/opt/rustwide/rustup-home/toolchains/1.76.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_core-5af394d9b1f07bdc.rlib" "/opt/rustwide/rustup-home/toolchains/1.76.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcore-693a8f23970c5917.rlib" "/opt/rustwide/rustup-home/toolchains/1.76.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcompiler_builtins-13fc9d1ed9c7a2bc.rlib" "-Wl,-Bdynamic" "-llzma" "-lz" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/rustup-home/toolchains/1.76.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/opt/rustwide/target/debug/deps/libprosic-7127359f585d8000" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs"
[INFO] [stdout]   = note: /usr/bin/ld: /opt/rustwide/target/debug/deps/librgsl-fa00de23209fc089.rlib(rgsl-fa00de23209fc089.rgsl.2bd4974cbb24346b-cgu.5.rcgu.o): in function `rgsl::randist::gaussian::gaussian_pdf':
[INFO] [stdout]           /opt/rustwide/cargo-home/registry/src/index.crates.io-6f17d22bba15001f/GSL-1.1.0/src/randist/gaussian.rs:20: undefined reference to `gsl_ran_gaussian_pdf'
[INFO] [stdout]           /usr/bin/ld: /opt/rustwide/target/debug/deps/librgsl-fa00de23209fc089.rlib(rgsl-fa00de23209fc089.rgsl.2bd4974cbb24346b-cgu.5.rcgu.o): in function `rgsl::randist::gaussian::ugaussian_P':
[INFO] [stdout]           /opt/rustwide/cargo-home/registry/src/index.crates.io-6f17d22bba15001f/GSL-1.1.0/src/randist/gaussian.rs:73: undefined reference to `gsl_cdf_ugaussian_P'
[INFO] [stdout]           /usr/bin/ld: /opt/rustwide/target/debug/deps/librgsl-fa00de23209fc089.rlib(rgsl-fa00de23209fc089.rgsl.2bd4974cbb24346b-cgu.7.rcgu.o): in function `rgsl::error::erfc':
[INFO] [stdout]           /opt/rustwide/cargo-home/registry/src/index.crates.io-6f17d22bba15001f/GSL-1.1.0/src/error.rs:28: undefined reference to `gsl_sf_erfc'
[INFO] [stdout]           collect2: error: ld returned 1 exit status
[INFO] [stdout]           
[INFO] [stdout]   = note: some `extern` functions couldn't be found; some native libraries may need to be installed or have their path specified
[INFO] [stdout]   = note: use the `-l` flag to specify native libraries to link
[INFO] [stdout]   = note: use the `cargo:rustc-link-lib` directive to specify the native libraries to link with Cargo (see https://doc.rust-lang.org/cargo/reference/build-scripts.html#cargorustc-link-libkindname)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to 1 previous error; 34 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `libprosic` (lib test) due to 2 previous errors; 34 warnings emitted
[INFO] running `Command { std: "docker" "inspect" "088d9e6fd5a5962a04ea6531e747af0fe22d111e85faa2e019545926aba44015", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "088d9e6fd5a5962a04ea6531e747af0fe22d111e85faa2e019545926aba44015", kill_on_drop: false }`
[INFO] [stdout] 088d9e6fd5a5962a04ea6531e747af0fe22d111e85faa2e019545926aba44015
[INFO] testing libprosic-0.7.3 against beta-2024-02-10 for beta-1.77-1
[INFO] extracting crate libprosic 0.7.3 into /workspace/builds/worker-1-tc2/source
[INFO] validating manifest of crates.io crate libprosic 0.7.3 on toolchain beta-2024-02-10
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2024-02-10" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate libprosic 0.7.3
[INFO] finished tweaking crates.io crate libprosic 0.7.3
[INFO] tweaked toml for crates.io crate libprosic 0.7.3 written to /workspace/builds/worker-1-tc2/source/Cargo.toml
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2024-02-10" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2024-02-10" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2024-02-10" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 208b3e252c95f3d907d772a0e544c45ef347b92a7c46bed4b10bc7d49656aaad
[INFO] running `Command { std: "docker" "start" "-a" "208b3e252c95f3d907d772a0e544c45ef347b92a7c46bed4b10bc7d49656aaad", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "208b3e252c95f3d907d772a0e544c45ef347b92a7c46bed4b10bc7d49656aaad", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "208b3e252c95f3d907d772a0e544c45ef347b92a7c46bed4b10bc7d49656aaad", kill_on_drop: false }`
[INFO] [stdout] 208b3e252c95f3d907d772a0e544c45ef347b92a7c46bed4b10bc7d49656aaad
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2024-02-10" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] e66ca4cfec7347c28da99508d3b847e998f944ced1f5135241339a1c9d8b0b86
[INFO] running `Command { std: "docker" "start" "-a" "e66ca4cfec7347c28da99508d3b847e998f944ced1f5135241339a1c9d8b0b86", kill_on_drop: false }`
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[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:62:20
[INFO] [stdout]    |
[INFO] [stdout] 62 |     let variants = try!(utils::collect_variants(
[INFO] [stdout]    |                    ^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:70:21
[INFO] [stdout]    |
[INFO] [stdout] 70 |     let chrom_seq = try!(reference_buffer.seq(&chrom));
[INFO] [stdout]    |                     ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:75:18
[INFO] [stdout]    |
[INFO] [stdout] 75 |             Some(try!(joint_model.pileup(
[INFO] [stdout]    |                  ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/call/pairwise.rs:159:26
[INFO] [stdout]     |
[INFO] [stdout] 159 |         let mut writer = try!(csv::WriterBuilder::new()
[INFO] [stdout]     |                          ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/model/sample.rs:76:17
[INFO] [stdout]    |
[INFO] [stdout] 76 |                 try!(self.reader.fetch(tid, window_start, end));
[INFO] [stdout]    |                 ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred
[INFO] [stdout]    --> src/model/evidence/reads.rs:335:1
[INFO] [stdout]     |
[INFO] [stdout] 335 | / lazy_static! {
[INFO] [stdout] 336 | |     static ref PROB_CONFUSION: LogProb = LogProb::from(Prob(0.3333));
[INFO] [stdout] 337 | | }
[INFO] [stdout]     | |_^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this warning originates in the macro `__lazy_static_create` which comes from the expansion of the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred
[INFO] [stdout]   --> src/model/priors/single_cell_bulk.rs:26:1
[INFO] [stdout]    |
[INFO] [stdout] 26 | / cached! {
[INFO] [stdout] 27 | |     AMPLIF_CACHE: UnboundCache<(AlleleFreq, usize, usize), LogProb> = UnboundCache::new();
[INFO] [stdout] 28 | |     // Lodato et al. 2015, Science, Supplementary Information, pages 8f and Fig. S5 (A, C, E)
[INFO] [stdout] 29 | |     // TODO: allow for non-default Lodato model parameters, e.g. learned from the data at hand
[INFO] [stdout] ...  |
[INFO] [stdout] 96 | |     }
[INFO] [stdout] 97 | | }
[INFO] [stdout]    | |_^
[INFO] [stdout]    |
[INFO] [stdout]    = note: this warning originates in the macro `__lazy_static_create` which comes from the expansion of the macro `cached` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/call/pairwise.rs:55:62
[INFO] [stdout]    |
[INFO] [stdout] 55 | ) -> Result<Vec<Option<model::PairPileup<'a, A, B, P>>>, Box<Error>>
[INFO] [stdout]    |                                                              ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout]    = note: `#[warn(bare_trait_objects)]` on by default
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 55 | ) -> Result<Vec<Option<model::PairPileup<'a, A, B, P>>>, Box<dyn Error>>
[INFO] [stdout]    |                                                              +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/call/pairwise.rs:116:21
[INFO] [stdout]     |
[INFO] [stdout] 116 | ) -> Result<(), Box<Error>>
[INFO] [stdout]     |                     ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 116 | ) -> Result<(), Box<dyn Error>>
[INFO] [stdout]     |                     +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/estimation/alignment_properties.rs:40:68
[INFO] [stdout]    |
[INFO] [stdout] 40 |     pub fn estimate<R: bam::Read>(bam: &mut R) -> Result<Self, Box<Error>> {
[INFO] [stdout]    |                                                                    ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 40 |     pub fn estimate<R: bam::Read>(bam: &mut R) -> Result<Self, Box<dyn Error>> {
[INFO] [stdout]    |                                                                    +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/estimation/alignment_properties.rs:142:33
[INFO] [stdout]     |
[INFO] [stdout] 142 |     ) -> Result<InsertSize, Box<Error>> {
[INFO] [stdout]     |                                 ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 142 |     ) -> Result<InsertSize, Box<dyn Error>> {
[INFO] [stdout]     |                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/estimation/fdr/ev.rs:35:21
[INFO] [stdout]    |
[INFO] [stdout] 35 | ) -> Result<(), Box<Error>>
[INFO] [stdout]    |                     ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 35 | ) -> Result<(), Box<dyn Error>>
[INFO] [stdout]    |                     +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/mod.rs:275:41
[INFO] [stdout]     |
[INFO] [stdout] 275 |     ) -> Result<SinglePileup<A, P>, Box<Error>> {
[INFO] [stdout]     |                                         ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 275 |     ) -> Result<SinglePileup<A, P>, Box<dyn Error>> {
[INFO] [stdout]     |                                         +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/mod.rs:416:42
[INFO] [stdout]     |
[INFO] [stdout] 416 |     ) -> Result<PairPileup<A, B, P>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 416 |     ) -> Result<PairPileup<A, B, P>, Box<dyn Error>> {
[INFO] [stdout]     |                                          +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/fragments.rs:52:89
[INFO] [stdout]    |
[INFO] [stdout] 52 | pub fn estimate_insert_size(left: &bam::Record, right: &bam::Record) -> Result<u32, Box<Error>> {
[INFO] [stdout]    |                                                                                         ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 52 | pub fn estimate_insert_size(left: &bam::Record, right: &bam::Record) -> Result<u32, Box<dyn Error>> {
[INFO] [stdout]    |                                                                                         +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/fragments.rs:120:41
[INFO] [stdout]     |
[INFO] [stdout] 120 |     ) -> Result<(LogProb, LogProb), Box<Error>> {
[INFO] [stdout]     |                                         ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 120 |     ) -> Result<(LogProb, LogProb), Box<dyn Error>> {
[INFO] [stdout]     |                                         +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/reads.rs:30:49
[INFO] [stdout]    |
[INFO] [stdout] 30 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>>;
[INFO] [stdout]    |                                                 ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 30 |     ) -> Result<Option<(LogProb, LogProb)>, Box<dyn Error>>;
[INFO] [stdout]    |                                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/reads.rs:56:49
[INFO] [stdout]    |
[INFO] [stdout] 56 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]    |                                                 ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 56 |     ) -> Result<Option<(LogProb, LogProb)>, Box<dyn Error>> {
[INFO] [stdout]    |                                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/reads.rs:101:49
[INFO] [stdout]     |
[INFO] [stdout] 101 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]     |                                                 ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 101 |     ) -> Result<Option<(LogProb, LogProb)>, Box<dyn Error>> {
[INFO] [stdout]     |                                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/reads.rs:169:49
[INFO] [stdout]     |
[INFO] [stdout] 169 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]     |                                                 ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 169 |     ) -> Result<Option<(LogProb, LogProb)>, Box<dyn Error>> {
[INFO] [stdout]     |                                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/sample.rs:68:82
[INFO] [stdout]    |
[INFO] [stdout] 68 |     pub fn fill(&mut self, chrom: &[u8], start: u32, end: u32) -> Result<(), Box<Error>> {
[INFO] [stdout]    |                                                                                  ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 68 |     pub fn fill(&mut self, chrom: &[u8], start: u32, end: u32) -> Result<(), Box<dyn Error>> {
[INFO] [stdout]    |                                                                                  +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:220:39
[INFO] [stdout]     |
[INFO] [stdout] 220 |     ) -> Result<Vec<Observation>, Box<Error>> {
[INFO] [stdout]     |                                       ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 220 |     ) -> Result<Vec<Observation>, Box<dyn Error>> {
[INFO] [stdout]     |                                       +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:362:42
[INFO] [stdout]     |
[INFO] [stdout] 362 |     ) -> Result<Option<Observation>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 362 |     ) -> Result<Option<Observation>, Box<dyn Error>> {
[INFO] [stdout]     |                                          +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:409:42
[INFO] [stdout]     |
[INFO] [stdout] 409 |     ) -> Result<Option<Observation>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 409 |     ) -> Result<Option<Observation>, Box<dyn Error>> {
[INFO] [stdout]     |                                          +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/utils.rs:27:46
[INFO] [stdout]    |
[INFO] [stdout] 27 | ) -> Result<Vec<Option<model::Variant>>, Box<Error>> {
[INFO] [stdout]    |                                              ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 27 | ) -> Result<Vec<Option<model::Variant>>, Box<dyn Error>> {
[INFO] [stdout]    |                                              +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:232:39
[INFO] [stdout]     |
[INFO] [stdout] 232 | ) -> Result<Vec<Option<LogProb>>, Box<Error>> {
[INFO] [stdout]     |                                       ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 232 | ) -> Result<Vec<Option<LogProb>>, Box<dyn Error>> {
[INFO] [stdout]     |                                       +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:276:35
[INFO] [stdout]     |
[INFO] [stdout] 276 | ) -> Result<Vec<NotNan<f64>>, Box<Error>> {
[INFO] [stdout]     |                                   ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 276 | ) -> Result<Vec<NotNan<f64>>, Box<dyn Error>> {
[INFO] [stdout]     |                                   +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:317:21
[INFO] [stdout]     |
[INFO] [stdout] 317 | ) -> Result<(), Box<Error>> {
[INFO] [stdout]     |                     ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 317 | ) -> Result<(), Box<dyn Error>> {
[INFO] [stdout]     |                     +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:204:62
[INFO] [stdout]     |
[INFO] [stdout] 204 |     pub fn seq(&mut self, chrom: &[u8]) -> Result<&[u8], Box<Error>> {
[INFO] [stdout]     |                                                              ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 204 |     pub fn seq(&mut self, chrom: &[u8]) -> Result<&[u8], Box<dyn Error>> {
[INFO] [stdout]     |                                                              +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:367:30
[INFO] [stdout]     |
[INFO] [stdout] 367 |     ) -> Result<Overlap, Box<Error>> {
[INFO] [stdout]     |                              ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 367 |     ) -> Result<Overlap, Box<dyn Error>> {
[INFO] [stdout]     |                              +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/fragments.rs:56:68
[INFO] [stdout]    |
[INFO] [stdout] 56 |     let aln = |rec: &bam::Record, cigar| -> Result<(u32, u32), Box<Error>> {
[INFO] [stdout]    |                                                                    ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 56 |     let aln = |rec: &bam::Record, cigar| -> Result<(u32, u32), Box<dyn Error>> {
[INFO] [stdout]    |                                                                    +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:363:34
[INFO] [stdout]     |
[INFO] [stdout] 363 |         let mut evidence: RefMut<evidence::reads::AbstractReadEvidence> = match variant {
[INFO] [stdout]     |                                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 363 |         let mut evidence: RefMut<dyn evidence::reads::AbstractReadEvidence> = match variant {
[INFO] [stdout]     |                                  +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:412:44
[INFO] [stdout]     |
[INFO] [stdout] 412 |          -> Result<(LogProb, LogProb), Box<Error>> {
[INFO] [stdout]     |                                            ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 412 |          -> Result<(LogProb, LogProb), Box<dyn Error>> {
[INFO] [stdout]     |                                            +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 33 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1m 10s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nom v3.2.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
[INFO] running `Command { std: "docker" "inspect" "e66ca4cfec7347c28da99508d3b847e998f944ced1f5135241339a1c9d8b0b86", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e66ca4cfec7347c28da99508d3b847e998f944ced1f5135241339a1c9d8b0b86", kill_on_drop: false }`
[INFO] [stdout] e66ca4cfec7347c28da99508d3b847e998f944ced1f5135241339a1c9d8b0b86
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2024-02-10" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 537a3e95ee5d329e903f4179b335ff9a35380e247b50bc71eb352229c13d712e
[INFO] running `Command { std: "docker" "start" "-a" "537a3e95ee5d329e903f4179b335ff9a35380e247b50bc71eb352229c13d712e", kill_on_drop: false }`
[INFO] [stderr]    Compiling winapi-build v0.1.1
[INFO] [stderr]    Compiling winapi v0.2.8
[INFO] [stderr]    Compiling version_check v0.1.5
[INFO] [stderr]    Compiling memchr v0.1.11
[INFO] [stderr]    Compiling miniz-sys v0.1.12
[INFO] [stderr]    Compiling httparse v1.8.0
[INFO] [stderr]    Compiling regex-syntax v0.3.9
[INFO] [stderr]    Compiling utf8-ranges v0.1.3
[INFO] [stderr]    Compiling kernel32-sys v0.2.2
[INFO] [stderr]    Compiling safemem v0.3.3
[INFO] [stderr]    Compiling aho-corasick v0.5.3
[INFO] [stderr]    Compiling base64 v0.9.3
[INFO] [stderr]    Compiling unicase v1.4.2
[INFO] [stderr]    Compiling mime v0.2.6
[INFO] [stderr]    Compiling thread-id v2.0.0
[INFO] [stderr]    Compiling num_cpus v1.16.0
[INFO] [stderr]    Compiling thread_local v0.2.7
[INFO] [stderr]    Compiling time v0.1.45
[INFO] [stderr]    Compiling language-tags v0.2.2
[INFO] [stderr]    Compiling typeable v0.1.2
[INFO] [stderr]    Compiling traitobject v0.1.0
[INFO] [stderr]    Compiling hyper v0.10.16
[INFO] [stderr]    Compiling fern v0.4.4
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:62:20
[INFO] [stdout]    |
[INFO] [stdout] 62 |     let variants = try!(utils::collect_variants(
[INFO] [stdout]    |                    ^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:70:21
[INFO] [stdout]    |
[INFO] [stdout] 70 |     let chrom_seq = try!(reference_buffer.seq(&chrom));
[INFO] [stdout]    |                     ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:75:18
[INFO] [stdout]    |
[INFO] [stdout] 75 |             Some(try!(joint_model.pileup(
[INFO] [stdout]    |                  ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/call/pairwise.rs:159:26
[INFO] [stdout]     |
[INFO] [stdout] 159 |         let mut writer = try!(csv::WriterBuilder::new()
[INFO] [stdout]     |                          ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/model/sample.rs:76:17
[INFO] [stdout]    |
[INFO] [stdout] 76 |                 try!(self.reader.fetch(tid, window_start, end));
[INFO] [stdout]    |                 ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred
[INFO] [stdout]    --> src/model/evidence/reads.rs:335:1
[INFO] [stdout]     |
[INFO] [stdout] 335 | / lazy_static! {
[INFO] [stdout] 336 | |     static ref PROB_CONFUSION: LogProb = LogProb::from(Prob(0.3333));
[INFO] [stdout] 337 | | }
[INFO] [stdout]     | |_^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this warning originates in the macro `__lazy_static_create` which comes from the expansion of the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred
[INFO] [stdout]   --> src/model/priors/single_cell_bulk.rs:26:1
[INFO] [stdout]    |
[INFO] [stdout] 26 | / cached! {
[INFO] [stdout] 27 | |     AMPLIF_CACHE: UnboundCache<(AlleleFreq, usize, usize), LogProb> = UnboundCache::new();
[INFO] [stdout] 28 | |     // Lodato et al. 2015, Science, Supplementary Information, pages 8f and Fig. S5 (A, C, E)
[INFO] [stdout] 29 | |     // TODO: allow for non-default Lodato model parameters, e.g. learned from the data at hand
[INFO] [stdout] ...  |
[INFO] [stdout] 96 | |     }
[INFO] [stdout] 97 | | }
[INFO] [stdout]    | |_^
[INFO] [stdout]    |
[INFO] [stdout]    = note: this warning originates in the macro `__lazy_static_create` which comes from the expansion of the macro `cached` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/call/pairwise.rs:55:62
[INFO] [stdout]    |
[INFO] [stdout] 55 | ) -> Result<Vec<Option<model::PairPileup<'a, A, B, P>>>, Box<Error>>
[INFO] [stdout]    |                                                              ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout]    = note: `#[warn(bare_trait_objects)]` on by default
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 55 | ) -> Result<Vec<Option<model::PairPileup<'a, A, B, P>>>, Box<dyn Error>>
[INFO] [stdout]    |                                                              +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/call/pairwise.rs:116:21
[INFO] [stdout]     |
[INFO] [stdout] 116 | ) -> Result<(), Box<Error>>
[INFO] [stdout]     |                     ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 116 | ) -> Result<(), Box<dyn Error>>
[INFO] [stdout]     |                     +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/estimation/alignment_properties.rs:40:68
[INFO] [stdout]    |
[INFO] [stdout] 40 |     pub fn estimate<R: bam::Read>(bam: &mut R) -> Result<Self, Box<Error>> {
[INFO] [stdout]    |                                                                    ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 40 |     pub fn estimate<R: bam::Read>(bam: &mut R) -> Result<Self, Box<dyn Error>> {
[INFO] [stdout]    |                                                                    +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/estimation/alignment_properties.rs:142:33
[INFO] [stdout]     |
[INFO] [stdout] 142 |     ) -> Result<InsertSize, Box<Error>> {
[INFO] [stdout]     |                                 ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 142 |     ) -> Result<InsertSize, Box<dyn Error>> {
[INFO] [stdout]     |                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/estimation/fdr/ev.rs:35:21
[INFO] [stdout]    |
[INFO] [stdout] 35 | ) -> Result<(), Box<Error>>
[INFO] [stdout]    |                     ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 35 | ) -> Result<(), Box<dyn Error>>
[INFO] [stdout]    |                     +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/mod.rs:275:41
[INFO] [stdout]     |
[INFO] [stdout] 275 |     ) -> Result<SinglePileup<A, P>, Box<Error>> {
[INFO] [stdout]     |                                         ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 275 |     ) -> Result<SinglePileup<A, P>, Box<dyn Error>> {
[INFO] [stdout]     |                                         +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/mod.rs:416:42
[INFO] [stdout]     |
[INFO] [stdout] 416 |     ) -> Result<PairPileup<A, B, P>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 416 |     ) -> Result<PairPileup<A, B, P>, Box<dyn Error>> {
[INFO] [stdout]     |                                          +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/fragments.rs:52:89
[INFO] [stdout]    |
[INFO] [stdout] 52 | pub fn estimate_insert_size(left: &bam::Record, right: &bam::Record) -> Result<u32, Box<Error>> {
[INFO] [stdout]    |                                                                                         ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 52 | pub fn estimate_insert_size(left: &bam::Record, right: &bam::Record) -> Result<u32, Box<dyn Error>> {
[INFO] [stdout]    |                                                                                         +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/fragments.rs:120:41
[INFO] [stdout]     |
[INFO] [stdout] 120 |     ) -> Result<(LogProb, LogProb), Box<Error>> {
[INFO] [stdout]     |                                         ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 120 |     ) -> Result<(LogProb, LogProb), Box<dyn Error>> {
[INFO] [stdout]     |                                         +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/reads.rs:30:49
[INFO] [stdout]    |
[INFO] [stdout] 30 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>>;
[INFO] [stdout]    |                                                 ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 30 |     ) -> Result<Option<(LogProb, LogProb)>, Box<dyn Error>>;
[INFO] [stdout]    |                                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/reads.rs:56:49
[INFO] [stdout]    |
[INFO] [stdout] 56 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]    |                                                 ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 56 |     ) -> Result<Option<(LogProb, LogProb)>, Box<dyn Error>> {
[INFO] [stdout]    |                                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/reads.rs:101:49
[INFO] [stdout]     |
[INFO] [stdout] 101 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]     |                                                 ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 101 |     ) -> Result<Option<(LogProb, LogProb)>, Box<dyn Error>> {
[INFO] [stdout]     |                                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/reads.rs:169:49
[INFO] [stdout]     |
[INFO] [stdout] 169 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]     |                                                 ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 169 |     ) -> Result<Option<(LogProb, LogProb)>, Box<dyn Error>> {
[INFO] [stdout]     |                                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/sample.rs:68:82
[INFO] [stdout]    |
[INFO] [stdout] 68 |     pub fn fill(&mut self, chrom: &[u8], start: u32, end: u32) -> Result<(), Box<Error>> {
[INFO] [stdout]    |                                                                                  ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 68 |     pub fn fill(&mut self, chrom: &[u8], start: u32, end: u32) -> Result<(), Box<dyn Error>> {
[INFO] [stdout]    |                                                                                  +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:220:39
[INFO] [stdout]     |
[INFO] [stdout] 220 |     ) -> Result<Vec<Observation>, Box<Error>> {
[INFO] [stdout]     |                                       ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 220 |     ) -> Result<Vec<Observation>, Box<dyn Error>> {
[INFO] [stdout]     |                                       +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:362:42
[INFO] [stdout]     |
[INFO] [stdout] 362 |     ) -> Result<Option<Observation>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 362 |     ) -> Result<Option<Observation>, Box<dyn Error>> {
[INFO] [stdout]     |                                          +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:409:42
[INFO] [stdout]     |
[INFO] [stdout] 409 |     ) -> Result<Option<Observation>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 409 |     ) -> Result<Option<Observation>, Box<dyn Error>> {
[INFO] [stdout]     |                                          +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/utils.rs:27:46
[INFO] [stdout]    |
[INFO] [stdout] 27 | ) -> Result<Vec<Option<model::Variant>>, Box<Error>> {
[INFO] [stdout]    |                                              ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 27 | ) -> Result<Vec<Option<model::Variant>>, Box<dyn Error>> {
[INFO] [stdout]    |                                              +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:232:39
[INFO] [stdout]     |
[INFO] [stdout] 232 | ) -> Result<Vec<Option<LogProb>>, Box<Error>> {
[INFO] [stdout]     |                                       ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 232 | ) -> Result<Vec<Option<LogProb>>, Box<dyn Error>> {
[INFO] [stdout]     |                                       +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:276:35
[INFO] [stdout]     |
[INFO] [stdout] 276 | ) -> Result<Vec<NotNan<f64>>, Box<Error>> {
[INFO] [stdout]     |                                   ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 276 | ) -> Result<Vec<NotNan<f64>>, Box<dyn Error>> {
[INFO] [stdout]     |                                   +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:317:21
[INFO] [stdout]     |
[INFO] [stdout] 317 | ) -> Result<(), Box<Error>> {
[INFO] [stdout]     |                     ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 317 | ) -> Result<(), Box<dyn Error>> {
[INFO] [stdout]     |                     +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:204:62
[INFO] [stdout]     |
[INFO] [stdout] 204 |     pub fn seq(&mut self, chrom: &[u8]) -> Result<&[u8], Box<Error>> {
[INFO] [stdout]     |                                                              ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 204 |     pub fn seq(&mut self, chrom: &[u8]) -> Result<&[u8], Box<dyn Error>> {
[INFO] [stdout]     |                                                              +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:367:30
[INFO] [stdout]     |
[INFO] [stdout] 367 |     ) -> Result<Overlap, Box<Error>> {
[INFO] [stdout]     |                              ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 367 |     ) -> Result<Overlap, Box<dyn Error>> {
[INFO] [stdout]     |                              +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/fragments.rs:56:68
[INFO] [stdout]    |
[INFO] [stdout] 56 |     let aln = |rec: &bam::Record, cigar| -> Result<(u32, u32), Box<Error>> {
[INFO] [stdout]    |                                                                    ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 56 |     let aln = |rec: &bam::Record, cigar| -> Result<(u32, u32), Box<dyn Error>> {
[INFO] [stdout]    |                                                                    +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:363:34
[INFO] [stdout]     |
[INFO] [stdout] 363 |         let mut evidence: RefMut<evidence::reads::AbstractReadEvidence> = match variant {
[INFO] [stdout]     |                                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 363 |         let mut evidence: RefMut<dyn evidence::reads::AbstractReadEvidence> = match variant {
[INFO] [stdout]     |                                  +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:412:44
[INFO] [stdout]     |
[INFO] [stdout] 412 |          -> Result<(LogProb, LogProb), Box<Error>> {
[INFO] [stdout]     |                                            ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 412 |          -> Result<(LogProb, LogProb), Box<dyn Error>> {
[INFO] [stdout]     |                                            +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 33 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]    Compiling regex v0.1.80
[INFO] [stderr]    Compiling flate2 v0.2.20
[INFO] [stderr]    Compiling env_logger v0.3.5
[INFO] [stderr]    Compiling libprosic v0.7.3 (/opt/rustwide/workdir)
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:62:20
[INFO] [stdout]    |
[INFO] [stdout] 62 |     let variants = try!(utils::collect_variants(
[INFO] [stdout]    |                    ^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:70:21
[INFO] [stdout]    |
[INFO] [stdout] 70 |     let chrom_seq = try!(reference_buffer.seq(&chrom));
[INFO] [stdout]    |                     ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:75:18
[INFO] [stdout]    |
[INFO] [stdout] 75 |             Some(try!(joint_model.pileup(
[INFO] [stdout]    |                  ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/call/pairwise.rs:159:26
[INFO] [stdout]     |
[INFO] [stdout] 159 |         let mut writer = try!(csv::WriterBuilder::new()
[INFO] [stdout]     |                          ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/model/sample.rs:76:17
[INFO] [stdout]    |
[INFO] [stdout] 76 |                 try!(self.reader.fetch(tid, window_start, end));
[INFO] [stdout]    |                 ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred
[INFO] [stdout]    --> src/model/evidence/reads.rs:335:1
[INFO] [stdout]     |
[INFO] [stdout] 335 | / lazy_static! {
[INFO] [stdout] 336 | |     static ref PROB_CONFUSION: LogProb = LogProb::from(Prob(0.3333));
[INFO] [stdout] 337 | | }
[INFO] [stdout]     | |_^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this warning originates in the macro `__lazy_static_create` which comes from the expansion of the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred
[INFO] [stdout]   --> src/model/priors/single_cell_bulk.rs:26:1
[INFO] [stdout]    |
[INFO] [stdout] 26 | / cached! {
[INFO] [stdout] 27 | |     AMPLIF_CACHE: UnboundCache<(AlleleFreq, usize, usize), LogProb> = UnboundCache::new();
[INFO] [stdout] 28 | |     // Lodato et al. 2015, Science, Supplementary Information, pages 8f and Fig. S5 (A, C, E)
[INFO] [stdout] 29 | |     // TODO: allow for non-default Lodato model parameters, e.g. learned from the data at hand
[INFO] [stdout] ...  |
[INFO] [stdout] 96 | |     }
[INFO] [stdout] 97 | | }
[INFO] [stdout]    | |_^
[INFO] [stdout]    |
[INFO] [stdout]    = note: this warning originates in the macro `__lazy_static_create` which comes from the expansion of the macro `cached` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/call/pairwise.rs:55:62
[INFO] [stdout]    |
[INFO] [stdout] 55 | ) -> Result<Vec<Option<model::PairPileup<'a, A, B, P>>>, Box<Error>>
[INFO] [stdout]    |                                                              ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout]    = note: `#[warn(bare_trait_objects)]` on by default
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 55 | ) -> Result<Vec<Option<model::PairPileup<'a, A, B, P>>>, Box<dyn Error>>
[INFO] [stdout]    |                                                              +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/call/pairwise.rs:116:21
[INFO] [stdout]     |
[INFO] [stdout] 116 | ) -> Result<(), Box<Error>>
[INFO] [stdout]     |                     ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 116 | ) -> Result<(), Box<dyn Error>>
[INFO] [stdout]     |                     +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/estimation/alignment_properties.rs:40:68
[INFO] [stdout]    |
[INFO] [stdout] 40 |     pub fn estimate<R: bam::Read>(bam: &mut R) -> Result<Self, Box<Error>> {
[INFO] [stdout]    |                                                                    ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 40 |     pub fn estimate<R: bam::Read>(bam: &mut R) -> Result<Self, Box<dyn Error>> {
[INFO] [stdout]    |                                                                    +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/estimation/alignment_properties.rs:142:33
[INFO] [stdout]     |
[INFO] [stdout] 142 |     ) -> Result<InsertSize, Box<Error>> {
[INFO] [stdout]     |                                 ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 142 |     ) -> Result<InsertSize, Box<dyn Error>> {
[INFO] [stdout]     |                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/estimation/fdr/ev.rs:35:21
[INFO] [stdout]    |
[INFO] [stdout] 35 | ) -> Result<(), Box<Error>>
[INFO] [stdout]    |                     ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 35 | ) -> Result<(), Box<dyn Error>>
[INFO] [stdout]    |                     +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/mod.rs:275:41
[INFO] [stdout]     |
[INFO] [stdout] 275 |     ) -> Result<SinglePileup<A, P>, Box<Error>> {
[INFO] [stdout]     |                                         ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 275 |     ) -> Result<SinglePileup<A, P>, Box<dyn Error>> {
[INFO] [stdout]     |                                         +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/mod.rs:416:42
[INFO] [stdout]     |
[INFO] [stdout] 416 |     ) -> Result<PairPileup<A, B, P>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 416 |     ) -> Result<PairPileup<A, B, P>, Box<dyn Error>> {
[INFO] [stdout]     |                                          +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/fragments.rs:52:89
[INFO] [stdout]    |
[INFO] [stdout] 52 | pub fn estimate_insert_size(left: &bam::Record, right: &bam::Record) -> Result<u32, Box<Error>> {
[INFO] [stdout]    |                                                                                         ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 52 | pub fn estimate_insert_size(left: &bam::Record, right: &bam::Record) -> Result<u32, Box<dyn Error>> {
[INFO] [stdout]    |                                                                                         +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/fragments.rs:120:41
[INFO] [stdout]     |
[INFO] [stdout] 120 |     ) -> Result<(LogProb, LogProb), Box<Error>> {
[INFO] [stdout]     |                                         ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 120 |     ) -> Result<(LogProb, LogProb), Box<dyn Error>> {
[INFO] [stdout]     |                                         +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/reads.rs:30:49
[INFO] [stdout]    |
[INFO] [stdout] 30 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>>;
[INFO] [stdout]    |                                                 ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 30 |     ) -> Result<Option<(LogProb, LogProb)>, Box<dyn Error>>;
[INFO] [stdout]    |                                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/reads.rs:56:49
[INFO] [stdout]    |
[INFO] [stdout] 56 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]    |                                                 ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 56 |     ) -> Result<Option<(LogProb, LogProb)>, Box<dyn Error>> {
[INFO] [stdout]    |                                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/reads.rs:101:49
[INFO] [stdout]     |
[INFO] [stdout] 101 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]     |                                                 ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 101 |     ) -> Result<Option<(LogProb, LogProb)>, Box<dyn Error>> {
[INFO] [stdout]     |                                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/reads.rs:169:49
[INFO] [stdout]     |
[INFO] [stdout] 169 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]     |                                                 ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 169 |     ) -> Result<Option<(LogProb, LogProb)>, Box<dyn Error>> {
[INFO] [stdout]     |                                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/sample.rs:68:82
[INFO] [stdout]    |
[INFO] [stdout] 68 |     pub fn fill(&mut self, chrom: &[u8], start: u32, end: u32) -> Result<(), Box<Error>> {
[INFO] [stdout]    |                                                                                  ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 68 |     pub fn fill(&mut self, chrom: &[u8], start: u32, end: u32) -> Result<(), Box<dyn Error>> {
[INFO] [stdout]    |                                                                                  +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:220:39
[INFO] [stdout]     |
[INFO] [stdout] 220 |     ) -> Result<Vec<Observation>, Box<Error>> {
[INFO] [stdout]     |                                       ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 220 |     ) -> Result<Vec<Observation>, Box<dyn Error>> {
[INFO] [stdout]     |                                       +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:362:42
[INFO] [stdout]     |
[INFO] [stdout] 362 |     ) -> Result<Option<Observation>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 362 |     ) -> Result<Option<Observation>, Box<dyn Error>> {
[INFO] [stdout]     |                                          +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:409:42
[INFO] [stdout]     |
[INFO] [stdout] 409 |     ) -> Result<Option<Observation>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 409 |     ) -> Result<Option<Observation>, Box<dyn Error>> {
[INFO] [stdout]     |                                          +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/utils.rs:27:46
[INFO] [stdout]    |
[INFO] [stdout] 27 | ) -> Result<Vec<Option<model::Variant>>, Box<Error>> {
[INFO] [stdout]    |                                              ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 27 | ) -> Result<Vec<Option<model::Variant>>, Box<dyn Error>> {
[INFO] [stdout]    |                                              +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:232:39
[INFO] [stdout]     |
[INFO] [stdout] 232 | ) -> Result<Vec<Option<LogProb>>, Box<Error>> {
[INFO] [stdout]     |                                       ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 232 | ) -> Result<Vec<Option<LogProb>>, Box<dyn Error>> {
[INFO] [stdout]     |                                       +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:276:35
[INFO] [stdout]     |
[INFO] [stdout] 276 | ) -> Result<Vec<NotNan<f64>>, Box<Error>> {
[INFO] [stdout]     |                                   ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 276 | ) -> Result<Vec<NotNan<f64>>, Box<dyn Error>> {
[INFO] [stdout]     |                                   +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:317:21
[INFO] [stdout]     |
[INFO] [stdout] 317 | ) -> Result<(), Box<Error>> {
[INFO] [stdout]     |                     ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 317 | ) -> Result<(), Box<dyn Error>> {
[INFO] [stdout]     |                     +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:204:62
[INFO] [stdout]     |
[INFO] [stdout] 204 |     pub fn seq(&mut self, chrom: &[u8]) -> Result<&[u8], Box<Error>> {
[INFO] [stdout]     |                                                              ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 204 |     pub fn seq(&mut self, chrom: &[u8]) -> Result<&[u8], Box<dyn Error>> {
[INFO] [stdout]     |                                                              +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:367:30
[INFO] [stdout]     |
[INFO] [stdout] 367 |     ) -> Result<Overlap, Box<Error>> {
[INFO] [stdout]     |                              ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 367 |     ) -> Result<Overlap, Box<dyn Error>> {
[INFO] [stdout]     |                              +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/fragments.rs:56:68
[INFO] [stdout]    |
[INFO] [stdout] 56 |     let aln = |rec: &bam::Record, cigar| -> Result<(u32, u32), Box<Error>> {
[INFO] [stdout]    |                                                                    ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 56 |     let aln = |rec: &bam::Record, cigar| -> Result<(u32, u32), Box<dyn Error>> {
[INFO] [stdout]    |                                                                    +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:363:34
[INFO] [stdout]     |
[INFO] [stdout] 363 |         let mut evidence: RefMut<evidence::reads::AbstractReadEvidence> = match variant {
[INFO] [stdout]     |                                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 363 |         let mut evidence: RefMut<dyn evidence::reads::AbstractReadEvidence> = match variant {
[INFO] [stdout]     |                                  +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:412:44
[INFO] [stdout]     |
[INFO] [stdout] 412 |          -> Result<(LogProb, LogProb), Box<Error>> {
[INFO] [stdout]     |                                            ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 412 |          -> Result<(LogProb, LogProb), Box<dyn Error>> {
[INFO] [stdout]     |                                            +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: this method call resolves to `<&[T; N] as IntoIterator>::into_iter` (due to backwards compatibility), but will resolve to <[T; N] as IntoIterator>::into_iter in Rust 2021
[INFO] [stdout]    --> src/model/sample.rs:612:79
[INFO] [stdout]     |
[INFO] [stdout] 612 |         for (record, true_alt_prob) in records.into_iter().zip(true_alt_probs.into_iter()) {
[INFO] [stdout]     |                                                                               ^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this changes meaning in Rust 2021
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/IntoIterator-for-arrays.html>
[INFO] [stdout]     = note: `#[warn(array_into_iter)]` on by default
[INFO] [stdout] help: use `.iter()` instead of `.into_iter()` to avoid ambiguity
[INFO] [stdout]     |
[INFO] [stdout] 612 |         for (record, true_alt_prob) in records.into_iter().zip(true_alt_probs.iter()) {
[INFO] [stdout]     |                                                                               ~~~~
[INFO] [stdout] help: or use `IntoIterator::into_iter(..)` instead of `.into_iter()` to explicitly iterate by value
[INFO] [stdout]     |
[INFO] [stdout] 612 |         for (record, true_alt_prob) in records.into_iter().zip(IntoIterator::into_iter(true_alt_probs)) {
[INFO] [stdout]     |                                                                ++++++++++++++++++++++++              ~
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: linking with `cc` failed: exit status: 1
[INFO] [stdout]   |
[INFO] [stdout]   = note: LC_ALL="C" PATH="/opt/rustwide/rustup-home/toolchains/beta-2024-02-10-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/bin:/opt/rustwide/cargo-home/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin" VSLANG="1033" "cc" "-m64" "/tmp/rustcM8vIsu/symbols.o" "/opt/rustwide/target/debug/deps/libprosic-780b0374191f8ce4.libprosic.ba638942e4edd4b4-cgu.00.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-780b0374191f8ce4.libprosic.ba638942e4edd4b4-cgu.01.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-780b0374191f8ce4.libprosic.ba638942e4edd4b4-cgu.02.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-780b0374191f8ce4.libprosic.ba638942e4edd4b4-cgu.03.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-780b0374191f8ce4.libprosic.ba638942e4edd4b4-cgu.04.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-780b0374191f8ce4.libprosic.ba638942e4edd4b4-cgu.05.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-780b0374191f8ce4.libprosic.ba638942e4edd4b4-cgu.06.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-780b0374191f8ce4.libprosic.ba638942e4edd4b4-cgu.07.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-780b0374191f8ce4.libprosic.ba638942e4edd4b4-cgu.08.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-780b0374191f8ce4.libprosic.ba638942e4edd4b4-cgu.09.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-780b0374191f8ce4.libprosic.ba638942e4edd4b4-cgu.10.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-780b0374191f8ce4.libprosic.ba638942e4edd4b4-cgu.11.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-780b0374191f8ce4.libprosic.ba638942e4edd4b4-cgu.12.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-780b0374191f8ce4.libprosic.ba638942e4edd4b4-cgu.13.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-780b0374191f8ce4.libprosic.ba638942e4edd4b4-cgu.14.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-780b0374191f8ce4.libprosic.ba638942e4edd4b4-cgu.15.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-780b0374191f8ce4.sd69refr9iro8ld.rcgu.o" "-Wl,--as-needed" "-L" "/opt/rustwide/target/debug/deps" "-L" "/opt/rustwide/target/debug/build/miniz-sys-d045d17cc0d9fc6a/out" "-L" "/opt/rustwide/target/debug/build/rust-htslib-49db4d4f5454c8ba/out" "-L" "/opt/rustwide/target/debug/build/bzip2-sys-1433c41a2442b6e7/out/lib" "-L" "/usr/lib/x86_64-linux-gnu" "-L" "/opt/rustwide/rustup-home/toolchains/beta-2024-02-10-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-Wl,-Bstatic" "/opt/rustwide/rustup-home/toolchains/beta-2024-02-10-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libtest-7b2522a9e679b88d.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-02-10-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libgetopts-f94d980056e8955a.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-02-10-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libunicode_width-dfc6ee63d8caa20c.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-02-10-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_std-113d7bdd8cf56a35.rlib" "/opt/rustwide/target/debug/deps/libenv_logger-8450410eba4a607b.rlib" "/opt/rustwide/target/debug/deps/libregex-7317670e20cdd229.rlib" "/opt/rustwide/target/debug/deps/libutf8_ranges-c4cdf9d3b7bb1c21.rlib" "/opt/rustwide/target/debug/deps/libregex_syntax-9a8a4f07ba87a2f9.rlib" "/opt/rustwide/target/debug/deps/libthread_local-925d5cad423aeead.rlib" "/opt/rustwide/target/debug/deps/libthread_id-31997be29499dbf5.rlib" "/opt/rustwide/target/debug/deps/libaho_corasick-fef706e08a2c298d.rlib" "/opt/rustwide/target/debug/deps/libmemchr-fb5b92f700ff841a.rlib" "/opt/rustwide/target/debug/deps/libcached-8ae2a4c472ec0d1b.rlib" "/opt/rustwide/target/debug/deps/libregex-a135f6328a2bad0b.rlib" "/opt/rustwide/target/debug/deps/libutf8_ranges-c5ef6d4612af7581.rlib" "/opt/rustwide/target/debug/deps/libregex_syntax-8adbdc4cd1e15bb3.rlib" "/opt/rustwide/target/debug/deps/libucd_util-827cdd5052c7251c.rlib" "/opt/rustwide/target/debug/deps/libthread_local-17af41059fe2c129.rlib" "/opt/rustwide/target/debug/deps/libaho_corasick-236975e57dcb3dd1.rlib" "/opt/rustwide/target/debug/deps/librusty_machine-6ded80263a2f2bdc.rlib" "/opt/rustwide/target/debug/deps/librulinalg-41e426cf54b6c72c.rlib" "/opt/rustwide/target/debug/deps/libnum-5924cb3dea2d7ed9.rlib" "/opt/rustwide/target/debug/deps/libnum_iter-833254fb9173ac57.rlib" "/opt/rustwide/target/debug/deps/libndarray-5834b3b0f8ef08dd.rlib" "/opt/rustwide/target/debug/deps/libnum_complex-0b488e377f5b2bfd.rlib" "/opt/rustwide/target/debug/deps/libnum_traits-f9c866b43784d062.rlib" "/opt/rustwide/target/debug/deps/libitertools-368f0e19f7d50122.rlib" "/opt/rustwide/target/debug/deps/libapprox-5c3f79124dbd4164.rlib" "/opt/rustwide/target/debug/deps/librgsl-76d2021e2435e892.rlib" "/opt/rustwide/target/debug/deps/libc_vec-bd6dc95e518a85f0.rlib" "/opt/rustwide/target/debug/deps/liblog-9f0ae329ac7e5a32.rlib" "/opt/rustwide/target/debug/deps/liblog-2cf4a51dfa4e790a.rlib" "/opt/rustwide/target/debug/deps/librust_htslib-a95d32ae9148f088.rlib" "/opt/rustwide/target/debug/deps/liblzma_sys-309287f4b15a3e80.rlib" "/opt/rustwide/target/debug/deps/libbzip2_sys-51b9b18f53580e3a.rlib" "/opt/rustwide/target/debug/deps/liblibz_sys-ab4e05527642e047.rlib" "/opt/rustwide/target/debug/deps/liblinear_map-a9bc6bc73e6981d0.rlib" "/opt/rustwide/target/debug/deps/liburl-fd620ebc76bf53ba.rlib" "/opt/rustwide/target/debug/deps/libpercent_encoding-39f007c0633ec8a6.rlib" "/opt/rustwide/target/debug/deps/libidna-a50ef6a6cbcb6a10.rlib" "/opt/rustwide/target/debug/deps/libunicode_normalization-6720ecd938ebfb2b.rlib" "/opt/rustwide/target/debug/deps/libtinyvec-dcbbce603bc23510.rlib" "/opt/rustwide/target/debug/deps/libtinyvec_macros-333661e3b238a9a3.rlib" "/opt/rustwide/target/debug/deps/libunicode_bidi-bf83d9f02bd44ef6.rlib" "/opt/rustwide/target/debug/deps/libmatches-59081526691d27d6.rlib" "/opt/rustwide/target/debug/deps/liblazy_static-297a58a4a5d545f0.rlib" "/opt/rustwide/target/debug/deps/libitertools-a7632d9d98f03d30.rlib" "/opt/rustwide/target/debug/deps/libieee754-6952c5f2b737dfeb.rlib" "/opt/rustwide/target/debug/deps/libbitflags-5beffbe465931980.rlib" "/opt/rustwide/target/debug/deps/libbio-e79c6cd5ee6cbb8c.rlib" "/opt/rustwide/target/debug/deps/libfxhash-2979afee709db725.rlib" "/opt/rustwide/target/debug/deps/libbyteorder-6ac88002c46ec63a.rlib" "/opt/rustwide/target/debug/deps/libvec_map-12dec922f51f993c.rlib" "/opt/rustwide/target/debug/deps/libstatrs-1c6e82bc56011e4c.rlib" "/opt/rustwide/target/debug/deps/librand-0bc3c98064debffc.rlib" "/opt/rustwide/target/debug/deps/librand-f53779e5dbb4c343.rlib" "/opt/rustwide/target/debug/deps/liblibc-aecffc58885071ba.rlib" "/opt/rustwide/target/debug/deps/libfnv-953831fe314029b4.rlib" "/opt/rustwide/target/debug/deps/libbv-17a4e1906ab999d7.rlib" "/opt/rustwide/target/debug/deps/libquick_error-4f8a11f127df9c4f.rlib" "/opt/rustwide/target/debug/deps/libordered_float-70b84e50d5cb453f.rlib" "/opt/rustwide/target/debug/deps/libnum_integer-c17dc0ad3f326032.rlib" "/opt/rustwide/target/debug/deps/libnewtype_derive-cad98274d9bf758f.rlib" "/opt/rustwide/target/debug/deps/libndarray-d41c07fb2cf5c174.rlib" "/opt/rustwide/target/debug/deps/libnum_complex-82a88e2adceb361d.rlib" "/opt/rustwide/target/debug/deps/libmatrixmultiply-e7211cf3a67eb699.rlib" "/opt/rustwide/target/debug/deps/librawpointer-c9a09bdcc3e94dd6.rlib" "/opt/rustwide/target/debug/deps/libmultimap-ac23a9b63237185f.rlib" "/opt/rustwide/target/debug/deps/libitertools_num-f48b80a4a35fa20c.rlib" "/opt/rustwide/target/debug/deps/libitertools-df4eea9b34edff4f.rlib" "/opt/rustwide/target/debug/deps/libeither-e538c3e41e608031.rlib" "/opt/rustwide/target/debug/deps/libcustom_derive-213f447f7e552ddf.rlib" "/opt/rustwide/target/debug/deps/libcsv-5e0430ae8b73fb69.rlib" "/opt/rustwide/target/debug/deps/libryu-4b03a7708da1319d.rlib" "/opt/rustwide/target/debug/deps/libitoa-34968a9f29c36fec.rlib" "/opt/rustwide/target/debug/deps/libcsv_core-d58bb5559c5db158.rlib" "/opt/rustwide/target/debug/deps/libserde-a0cf26fd80370e96.rlib" "/opt/rustwide/target/debug/deps/libbytecount-86b9b06fabc3e3ed.rlib" "/opt/rustwide/target/debug/deps/libbit_set-0010a728dbb518a0.rlib" "/opt/rustwide/target/debug/deps/libbit_vec-4eb266c3039ae585.rlib" "/opt/rustwide/target/debug/deps/libapprox-5ae585450a7b8373.rlib" "/opt/rustwide/target/debug/deps/libnum_traits-e5939db0afbe8e42.rlib" "/opt/rustwide/target/debug/deps/libbio_types-8e08b96f24d7c3ec.rlib" "/opt/rustwide/target/debug/deps/libthiserror-df4ce4651ed8aa21.rlib" "/opt/rustwide/target/debug/deps/libregex-6650153acdf9c8d1.rlib" "/opt/rustwide/target/debug/deps/libregex_automata-fe2a837abc40125c.rlib" "/opt/rustwide/target/debug/deps/libaho_corasick-182918045624edef.rlib" "/opt/rustwide/target/debug/deps/libmemchr-14a47255884553ca.rlib" "/opt/rustwide/target/debug/deps/libregex_syntax-2fba322c2516c6a3.rlib" "/opt/rustwide/target/debug/deps/liblazy_static-efa3519517df6cf0.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-02-10-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libstd-c3d3f3356130ff3b.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-02-10-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libpanic_unwind-95df42f89c1d4925.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-02-10-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libobject-0d2835f8aa540844.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-02-10-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libmemchr-370839a40e011065.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-02-10-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libaddr2line-9649e5e19a7f7d26.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-02-10-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libgimli-947cba7c5cf68c1c.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-02-10-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_demangle-ced012bebfb4965d.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-02-10-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libstd_detect-ca1b3bc71d252cc2.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-02-10-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libhashbrown-fc6e78e39549a6fa.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-02-10-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_alloc-339fe9c79c84af4f.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-02-10-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libminiz_oxide-1568bb4b0be20e00.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-02-10-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libadler-fe9837fa83c5d69d.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-02-10-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libunwind-4c6008bb65e308f5.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-02-10-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcfg_if-c9bf4c045d493bdb.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-02-10-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/liblibc-e47cddc003bce885.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-02-10-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/liballoc-ddda47710dcba33d.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-02-10-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_core-e46bc3da6d7c462f.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-02-10-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcore-8d1ac131d3cb2645.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2024-02-10-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcompiler_builtins-b4e1725cffd81412.rlib" "-Wl,-Bdynamic" "-llzma" "-lz" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/rustup-home/toolchains/beta-2024-02-10-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/opt/rustwide/target/debug/deps/libprosic-780b0374191f8ce4" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs"
[INFO] [stdout]   = note: /usr/bin/ld: /opt/rustwide/target/debug/deps/librgsl-76d2021e2435e892.rlib(rgsl-76d2021e2435e892.rgsl.d2806fe645473616-cgu.5.rcgu.o): in function `rgsl::randist::gaussian::gaussian_pdf':
[INFO] [stdout]           /opt/rustwide/cargo-home/registry/src/index.crates.io-6f17d22bba15001f/GSL-1.1.0/src/randist/gaussian.rs:20: undefined reference to `gsl_ran_gaussian_pdf'
[INFO] [stdout]           /usr/bin/ld: /opt/rustwide/target/debug/deps/librgsl-76d2021e2435e892.rlib(rgsl-76d2021e2435e892.rgsl.d2806fe645473616-cgu.5.rcgu.o): in function `rgsl::randist::gaussian::ugaussian_P':
[INFO] [stdout]           /opt/rustwide/cargo-home/registry/src/index.crates.io-6f17d22bba15001f/GSL-1.1.0/src/randist/gaussian.rs:73: undefined reference to `gsl_cdf_ugaussian_P'
[INFO] [stdout]           /usr/bin/ld: /opt/rustwide/target/debug/deps/librgsl-76d2021e2435e892.rlib(rgsl-76d2021e2435e892.rgsl.d2806fe645473616-cgu.7.rcgu.o): in function `rgsl::error::erfc':
[INFO] [stdout]           /opt/rustwide/cargo-home/registry/src/index.crates.io-6f17d22bba15001f/GSL-1.1.0/src/error.rs:28: undefined reference to `gsl_sf_erfc'
[INFO] [stdout]           collect2: error: ld returned 1 exit status
[INFO] [stdout]           
[INFO] [stdout]   = note: some `extern` functions couldn't be found; some native libraries may need to be installed or have their path specified
[INFO] [stdout]   = note: use the `-l` flag to specify native libraries to link
[INFO] [stdout]   = note: use the `cargo:rustc-link-lib` directive to specify the native libraries to link with Cargo (see https://doc.rust-lang.org/cargo/reference/build-scripts.html#rustc-link-lib)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to 1 previous error; 34 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `libprosic` (lib test) due to 2 previous errors; 34 warnings emitted
[INFO] running `Command { std: "docker" "inspect" "537a3e95ee5d329e903f4179b335ff9a35380e247b50bc71eb352229c13d712e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "537a3e95ee5d329e903f4179b335ff9a35380e247b50bc71eb352229c13d712e", kill_on_drop: false }`
[INFO] [stdout] 537a3e95ee5d329e903f4179b335ff9a35380e247b50bc71eb352229c13d712e
