[INFO] cloning repository https://github.com/OWissett/freesasa-rs
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/OWissett/freesasa-rs" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FOWissett%2Ffreesasa-rs", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FOWissett%2Ffreesasa-rs'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 3be252e7ac82ecd5f506c2c6fdd90adcb7a210af
[INFO] documenting OWissett/freesasa-rs against 1.75.0 for beta-1.76-rustdoc-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FOWissett%2Ffreesasa-rs" "/workspace/builds/worker-2-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc1/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/OWissett/freesasa-rs on toolchain 1.75.0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.75.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/OWissett/freesasa-rs
[INFO] finished tweaking git repo https://github.com/OWissett/freesasa-rs
[INFO] tweaked toml for git repo https://github.com/OWissett/freesasa-rs written to /workspace/builds/worker-2-tc1/source/Cargo.toml
[INFO] crate git repo https://github.com/OWissett/freesasa-rs already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.75.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Updating git repository `https://github.com/OWissett/pdbtbx.git`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded freesasa-sys v0.1.10
[INFO] [stderr]   Downloaded doc-cfg v0.1.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+1.75.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 39f9cf16b642a49f567546f851671f21ce12b57549409fb79a032817f9f0a92a
[INFO] running `Command { std: "docker" "start" "-a" "39f9cf16b642a49f567546f851671f21ce12b57549409fb79a032817f9f0a92a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "39f9cf16b642a49f567546f851671f21ce12b57549409fb79a032817f9f0a92a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "39f9cf16b642a49f567546f851671f21ce12b57549409fb79a032817f9f0a92a", kill_on_drop: false }`
[INFO] [stdout] 39f9cf16b642a49f567546f851671f21ce12b57549409fb79a032817f9f0a92a
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+1.75.0" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] adc3dd269088ec257333dfe5ebd2c4166dbaf73de533c86376de3502b6db1256
[INFO] running `Command { std: "docker" "start" "-a" "adc3dd269088ec257333dfe5ebd2c4166dbaf73de533c86376de3502b6db1256", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.56
[INFO] [stderr]    Compiling quote v1.0.26
[INFO] [stderr]    Compiling unicode-ident v1.0.8
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling libc v0.2.147
[INFO] [stderr]    Compiling memchr v2.5.0
[INFO] [stderr]    Compiling semver v1.0.17
[INFO] [stderr]    Compiling crossbeam-utils v0.8.15
[INFO] [stderr]    Compiling memoffset v0.8.0
[INFO] [stderr]    Compiling cc v1.0.79
[INFO] [stderr]    Compiling lock_api v0.4.9
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.14
[INFO] [stderr]    Compiling serde_derive v1.0.160
[INFO] [stderr]    Compiling log v0.4.17
[INFO] [stderr]    Compiling rustc_version v0.4.0
[INFO] [stderr]    Compiling either v1.8.1
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]    Compiling bindgen v0.64.0
[INFO] [stderr]    Compiling regex-syntax v0.6.29
[INFO] [stderr]    Compiling libm v0.2.6
[INFO] [stderr]    Compiling syn v2.0.15
[INFO] [stderr]    Compiling proc-macro2 v0.4.30
[INFO] [stderr]    Compiling serde v1.0.160
[INFO] [stderr]    Compiling io-lifetimes v1.0.10
[INFO] [stderr]    Compiling heapless v0.7.16
[INFO] [stderr]    Compiling link-cplusplus v1.0.8
[INFO] [stderr]    Compiling which v4.4.0
[INFO] [stderr]    Compiling num-traits v0.2.15
[INFO] [stderr]    Compiling unicode-xid v0.1.0
[INFO] [stderr]    Compiling rayon-core v1.11.0
[INFO] [stderr]    Compiling shlex v1.1.0
[INFO] [stderr]    Compiling rustix v0.37.11
[INFO] [stderr]    Compiling crc32fast v1.3.2
[INFO] [stderr]     Checking spin v0.9.8
[INFO] [stderr]     Checking crossbeam-deque v0.8.3
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]     Checking num_cpus v1.15.0
[INFO] [stderr]    Compiling autotools v0.2.6
[INFO] [stderr]    Compiling regex v1.7.3
[INFO] [stderr]     Checking crossbeam-channel v0.5.8
[INFO] [stderr]    Compiling indexmap v1.9.3
[INFO] [stderr]    Compiling fs_extra v1.3.0
[INFO] [stderr]     Checking linux-raw-sys v0.3.1
[INFO] [stderr]     Checking miniz_oxide v0.7.1
[INFO] [stderr]     Checking aho-corasick v0.7.20
[INFO] [stderr]    Compiling quote v0.6.13
[INFO] [stderr]    Compiling serde_json v1.0.96
[INFO] [stderr]     Checking smallvec v1.10.0
[INFO] [stderr]     Checking rayon v1.7.0
[INFO] [stderr]    Compiling doc-cfg v0.1.0
[INFO] [stderr]    Compiling darling_core v0.14.4
[INFO] [stderr]     Checking rstar v0.11.0
[INFO] [stderr]     Checking is-terminal v0.4.7
[INFO] [stderr]     Checking flate2 v1.0.28
[INFO] [stderr]     Checking ryu v1.0.13
[INFO] [stderr]     Checking humantime v2.1.0
[INFO] [stderr]     Checking itoa v1.0.6
[INFO] [stderr]     Checking termcolor v1.2.0
[INFO] [stderr]     Checking env_logger v0.10.0
[INFO] [stderr]    Compiling darling_macro v0.14.4
[INFO] [stderr]    Compiling darling v0.14.4
[INFO] [stderr]    Compiling serde_with_macros v2.3.2
[INFO] [stderr]    Compiling freesasa-sys v0.1.10
[INFO] [stderr]     Checking serde_with v2.3.2
[INFO] [stderr]     Checking pdbtbx v0.10.2 (https://github.com/OWissett/pdbtbx.git#85fb3c9b)
[INFO] [stderr] error: failed to run custom build command for `freesasa-sys v0.1.10`
[INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation.
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/freesasa-sys-cd6a2b6ca3491566/build-script-build` (exit status: 101)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   cargo:rerun-if-changed=build.rs
[INFO] [stderr]   running: cd "/opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa" && "sh" "-c" "exec \"$0\" \"$@\"" "autoreconf" "-i"
[INFO] [stderr]   running: cd "/opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/build" && CC="cc" CFLAGS="-O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64" CXX="c++" CXXFLAGS="-O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64" "sh" "-c" "exec \"$0\" \"$@\"" "/opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/configure" "--prefix=/opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out" "--disable-shared" "--enable-static" "--disable-json" "--disable-threads" "--disable-xml"
[INFO] [stderr]   checking for a BSD-compatible install... /usr/bin/install -c
[INFO] [stderr]   checking whether build environment is sane... yes
[INFO] [stderr]   checking for a race-free mkdir -p... /usr/bin/mkdir -p
[INFO] [stderr]   checking for gawk... no
[INFO] [stderr]   checking for mawk... mawk
[INFO] [stderr]   checking whether make sets $(MAKE)... yes
[INFO] [stderr]   checking whether make supports nested variables... yes
[INFO] [stderr]   checking for gcc... cc
[INFO] [stderr]   checking whether the C compiler works... yes
[INFO] [stderr]   checking for C compiler default output file name... a.out
[INFO] [stderr]   checking for suffix of executables... 
[INFO] [stderr]   checking whether we are cross compiling... no
[INFO] [stderr]   checking for suffix of object files... o
[INFO] [stderr]   checking whether the compiler supports GNU C... yes
[INFO] [stderr]   checking whether cc accepts -g... yes
[INFO] [stderr]   checking for cc option to enable C11 features... none needed
[INFO] [stderr]   checking whether cc understands -c and -o together... yes
[INFO] [stderr]   checking whether make supports the include directive... yes (GNU style)
[INFO] [stderr]   checking dependency style of cc... gcc3
[INFO] [stderr]   checking whether the compiler supports GNU C++... yes
[INFO] [stderr]   checking whether c++ accepts -g... yes
[INFO] [stderr]   checking for c++ option to enable C++11 features... none needed
[INFO] [stderr]   checking dependency style of c++... gcc3
[INFO] [stderr]   checking for ranlib... ranlib
[INFO] [stderr]   checking for sqrt in -lm... yes
[INFO] [stderr]   checking for dlsym in -ldl... yes
[INFO] [stderr]   checking for stdio.h... yes
[INFO] [stderr]   checking for stdlib.h... yes
[INFO] [stderr]   checking for string.h... yes
[INFO] [stderr]   checking for inttypes.h... yes
[INFO] [stderr]   checking for stdint.h... yes
[INFO] [stderr]   checking for strings.h... yes
[INFO] [stderr]   checking for sys/stat.h... yes
[INFO] [stderr]   checking for sys/types.h... yes
[INFO] [stderr]   checking for unistd.h... yes
[INFO] [stderr]   checking for size_t... yes
[INFO] [stderr]   checking for working alloca.h... yes
[INFO] [stderr]   checking for alloca... yes
[INFO] [stderr]   checking for inttypes.h... (cached) yes
[INFO] [stderr]   checking for libintl.h... yes
[INFO] [stderr]   checking for malloc.h... yes
[INFO] [stderr]   checking for stddef.h... yes
[INFO] [stderr]   checking for stdlib.h... (cached) yes
[INFO] [stderr]   checking for string.h... (cached) yes
[INFO] [stderr]   checking for strings.h... (cached) yes
[INFO] [stderr]   checking for sys/time.h... yes
[INFO] [stderr]   checking for unistd.h... (cached) yes
[INFO] [stderr]   checking for dlfcn.h... yes
[INFO] [stderr]   checking for inline... inline
[INFO] [stderr]   checking for size_t... (cached) yes
[INFO] [stderr]   checking for C/C++ restrict keyword... __restrict__
[INFO] [stderr]   checking for int16_t... yes
[INFO] [stderr]   checking for int32_t... yes
[INFO] [stderr]   checking for int8_t... yes
[INFO] [stderr]   checking for uint16_t... yes
[INFO] [stderr]   checking for uint32_t... yes
[INFO] [stderr]   checking for uint64_t... yes
[INFO] [stderr]   checking for uint8_t... yes
[INFO] [stderr]   checking for inline... (cached) inline
[INFO] [stderr]   checking build system type... x86_64-pc-linux-gnu
[INFO] [stderr]   checking host system type... x86_64-pc-linux-gnu
[INFO] [stderr]   checking for GNU libc compatible malloc... yes
[INFO] [stderr]   checking for GNU libc compatible realloc... yes
[INFO] [stderr]   checking for memset... yes
[INFO] [stderr]   checking for mkdir... yes
[INFO] [stderr]   checking for sqrt... yes
[INFO] [stderr]   checking for strchr... yes
[INFO] [stderr]   checking for strdup... yes
[INFO] [stderr]   checking for strerror... yes
[INFO] [stderr]   checking for strncasecmp... yes
[INFO] [stderr]   checking for getopt_long... yes
[INFO] [stderr]   checking for getline... yes
[INFO] [stderr]   checking whether c++ supports C++14 features with -std=gnu++14... yes
[INFO] [stderr]   Building without thread support
[INFO] [stderr]   configure: Building without support for XML output.
[INFO] [stderr]   configure: Building without support for JSON output.
[INFO] [stderr]   checking that generated files are newer than configure... done
[INFO] [stderr]   configure: creating ./config.status
[INFO] [stderr]   config.status: creating Makefile
[INFO] [stderr]   config.status: creating src/Makefile
[INFO] [stderr]   config.status: creating doc/Makefile
[INFO] [stderr]   config.status: creating doc/Doxyfile
[INFO] [stderr]   config.status: creating doc/man/freesasa.1
[INFO] [stderr]   config.status: creating tests/Makefile
[INFO] [stderr]   config.status: creating share/Makefile
[INFO] [stderr]   config.status: creating tests/test-cli
[INFO] [stderr]   config.status: creating config.h
[INFO] [stderr]   config.status: executing depfiles commands
[INFO] [stderr]   running: cd "/opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/build" && MAKEFLAGS="-j --jobserver-fds=7,8 --jobserver-auth=7,8" "sh" "-c" "exec \"$0\" \"$@\"" "make" "install"
[INFO] [stderr]   Making install in src
[INFO] [stderr]   make[1]: Entering directory '/opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/build/src'
[INFO] [stderr]   c++ -std=gnu++14 -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/src -I..  -I/opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/third-party/gemmi/include/   -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT main.o -MD -MP -MF .deps/main.Tpo -c -o main.o /opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/src/main.cc
[INFO] [stderr]   c++ -std=gnu++14 -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/src -I..  -I/opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/third-party/gemmi/include/   -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT cif.o -MD -MP -MF .deps/cif.Tpo -c -o cif.o /opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/src/cif.cc
[INFO] [stderr]   cc -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/src -I..  -I/opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/third-party/gemmi/include/    -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT classifier.o -MD -MP -MF .deps/classifier.Tpo -c -o classifier.o /opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/src/classifier.c
[INFO] [stderr]   cc -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/src -I..  -I/opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/third-party/gemmi/include/    -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT classifier_protor.o -MD -MP -MF .deps/classifier_protor.Tpo -c -o classifier_protor.o /opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/src/classifier_protor.c
[INFO] [stderr]   cc -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/src -I..  -I/opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/third-party/gemmi/include/    -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT classifier_oons.o -MD -MP -MF .deps/classifier_oons.Tpo -c -o classifier_oons.o /opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/src/classifier_oons.c
[INFO] [stderr]   cc -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/src -I..  -I/opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/third-party/gemmi/include/    -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT classifier_naccess.o -MD -MP -MF .deps/classifier_naccess.Tpo -c -o classifier_naccess.o /opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/src/classifier_naccess.c
[INFO] [stderr]   cc -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/src -I..  -I/opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/third-party/gemmi/include/    -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT coord.o -MD -MP -MF .deps/coord.Tpo -c -o coord.o /opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/src/coord.c
[INFO] [stderr]   cc -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/src -I..  -I/opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/third-party/gemmi/include/    -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT pdb.o -MD -MP -MF .deps/pdb.Tpo -c -o pdb.o /opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/src/pdb.c
[INFO] [stderr]   mv -f .deps/classifier_naccess.Tpo .deps/classifier_naccess.Po
[INFO] [stderr]   cc -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/src -I..  -I/opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/third-party/gemmi/include/    -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT log.o -MD -MP -MF .deps/log.Tpo -c -o log.o /opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/src/log.c
[INFO] [stderr]   mv -f .deps/classifier_oons.Tpo .deps/classifier_oons.Po
[INFO] [stderr]   mv -f .deps/classifier_protor.Tpo .deps/classifier_protor.Po
[INFO] [stderr]   cc -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/src -I..  -I/opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/third-party/gemmi/include/    -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT sasa_lr.o -MD -MP -MF .deps/sasa_lr.Tpo -c -o sasa_lr.o /opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/src/sasa_lr.c
[INFO] [stderr]   cc -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/src -I..  -I/opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/third-party/gemmi/include/    -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT sasa_sr.o -MD -MP -MF .deps/sasa_sr.Tpo -c -o sasa_sr.o /opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/src/sasa_sr.c
[INFO] [stderr]   mv -f .deps/pdb.Tpo .deps/pdb.Po
[INFO] [stderr]   cc -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/src -I..  -I/opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/third-party/gemmi/include/    -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT structure.o -MD -MP -MF .deps/structure.Tpo -c -o structure.o /opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/src/structure.c
[INFO] [stderr]   mv -f .deps/coord.Tpo .deps/coord.Po
[INFO] [stderr]   cc -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/src -I..  -I/opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/third-party/gemmi/include/    -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT node.o -MD -MP -MF .deps/node.Tpo -c -o node.o /opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/src/node.c
[INFO] [stderr]   mv -f .deps/log.Tpo .deps/log.Po
[INFO] [stderr]   cc -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/src -I..  -I/opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/third-party/gemmi/include/    -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT freesasa.o -MD -MP -MF .deps/freesasa.Tpo -c -o freesasa.o /opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/src/freesasa.c
[INFO] [stderr]   mv -f .deps/classifier.Tpo .deps/classifier.Po
[INFO] [stderr]   cc -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/src -I..  -I/opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/third-party/gemmi/include/    -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT nb.o -MD -MP -MF .deps/nb.Tpo -c -o nb.o /opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/src/nb.c
[INFO] [stderr]   mv -f .deps/sasa_sr.Tpo .deps/sasa_sr.Po
[INFO] [stderr]   mv -f .deps/sasa_lr.Tpo .deps/sasa_lr.Po
[INFO] [stderr]   cc -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/src -I..  -I/opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/third-party/gemmi/include/    -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT util.o -MD -MP -MF .deps/util.Tpo -c -o util.o /opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/src/util.c
[INFO] [stderr]   cc -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/src -I..  -I/opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/third-party/gemmi/include/    -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT rsa.o -MD -MP -MF .deps/rsa.Tpo -c -o rsa.o /opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/src/rsa.c
[INFO] [stderr]   mv -f .deps/freesasa.Tpo .deps/freesasa.Po
[INFO] [stderr]   cc -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/src -I..  -I/opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/third-party/gemmi/include/    -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT selection.o -MD -MP -MF .deps/selection.Tpo -c -o selection.o /opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/src/selection.c
[INFO] [stderr]   mv -f .deps/util.Tpo .deps/util.Po
[INFO] [stderr]   cc -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/src -I..  -I/opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/third-party/gemmi/include/    -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT lexer.o -MD -MP -MF .deps/lexer.Tpo -c -o lexer.o /opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/src/lexer.c
[INFO] [stderr]   mv -f .deps/node.Tpo .deps/node.Po
[INFO] [stderr]   cc -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/src -I..  -I/opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/third-party/gemmi/include/    -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT parser.o -MD -MP -MF .deps/parser.Tpo -c -o parser.o /opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/src/parser.c
[INFO] [stderr]   mv -f .deps/rsa.Tpo .deps/rsa.Po
[INFO] [stderr]   cc -DHAVE_CONFIG_H -I. -I/opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/src -I..  -I/opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/third-party/gemmi/include/    -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64 -MT example.o -MD -MP -MF .deps/example.Tpo -c -o example.o /opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/freesasa/src/example.c
[INFO] [stderr]   mv -f .deps/structure.Tpo .deps/structure.Po
[INFO] [stderr]   mv -f .deps/nb.Tpo .deps/nb.Po
[INFO] [stderr]   mv -f .deps/example.Tpo .deps/example.Po
[INFO] [stderr]   mv -f .deps/parser.Tpo .deps/parser.Po
[INFO] [stderr]   mv -f .deps/selection.Tpo .deps/selection.Po
[INFO] [stderr]   mv -f .deps/lexer.Tpo .deps/lexer.Po
[INFO] [stderr]   rm -f libfreesasa.a
[INFO] [stderr]   ar cru libfreesasa.a classifier.o classifier_protor.o classifier_oons.o classifier_naccess.o coord.o pdb.o log.o sasa_lr.o sasa_sr.o structure.o node.o freesasa.o nb.o util.o rsa.o selection.o lexer.o parser.o   
[INFO] [stderr]   ranlib libfreesasa.a
[INFO] [stderr]   cc   -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64   -o example example.o libfreesasa.a   -ldl -lm 
[INFO] [stderr]   mv -f .deps/main.Tpo .deps/main.Po
[INFO] [stderr]   mv -f .deps/cif.Tpo .deps/cif.Po
[INFO] [stderr]   c++ -std=gnu++14  -O0 -ffunction-sections -fdata-sections -fPIC -gdwarf-4 -fno-omit-frame-pointer -m64   -o freesasa main.o cif.o -lc++ libfreesasa.a   -ldl -lm 
[INFO] [stderr]   make[1]: Leaving directory '/opt/rustwide/target/debug/build/freesasa-sys-b9a6a087584c387d/out/build/src'
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr]   configure.ac:42: warning: The macro `AC_PROG_CC_C99' is obsolete.
[INFO] [stderr]   configure.ac:42: You should run autoupdate.
[INFO] [stderr]   ./lib/autoconf/c.m4:1659: AC_PROG_CC_C99 is expanded from...
[INFO] [stderr]   configure.ac:42: the top level
[INFO] [stderr]   configure.ac:123: warning: AC_PROG_LEX without either yywrap or noyywrap is obsolete
[INFO] [stderr]   ./lib/autoconf/programs.m4:716: _AC_PROG_LEX is expanded from...
[INFO] [stderr]   ./lib/autoconf/programs.m4:709: AC_PROG_LEX is expanded from...
[INFO] [stderr]   configure.ac:123: the top level
[INFO] [stderr]   configure.ac:16: installing './compile'
[INFO] [stderr]   configure.ac:46: installing './config.guess'
[INFO] [stderr]   configure.ac:46: installing './config.sub'
[INFO] [stderr]   configure.ac:6: installing './install-sh'
[INFO] [stderr]   configure.ac:6: installing './missing'
[INFO] [stderr]   src/Makefile.am: installing './depcomp'
[INFO] [stderr]   parallel-tests: installing './test-driver'
[INFO] [stderr]   configure: WARNING: unrecognized options: --disable-shared, --enable-static
[INFO] [stderr]   configure: WARNING: unrecognized options: --disable-shared, --enable-static
[INFO] [stderr]   ar: `u' modifier ignored since `D' is the default (see `U')
[INFO] [stderr]   /usr/bin/ld: cannot find -lc++: No such file or directory
[INFO] [stderr]   collect2: error: ld returned 1 exit status
[INFO] [stderr]   make[1]: *** [Makefile:521: freesasa] Error 1
[INFO] [stderr]   make: *** [Makefile:391: install-recursive] Error 1
[INFO] [stderr]   thread 'main' panicked at /opt/rustwide/cargo-home/registry/src/index.crates.io-6f17d22bba15001f/autotools-0.2.6/src/lib.rs:781:5:
[INFO] [stderr] 
[INFO] [stderr]   command did not execute successfully, got: exit status: 2
[INFO] [stderr] 
[INFO] [stderr]   build script failed, must exit now
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x55e85b62113c - std::backtrace_rs::backtrace::libunwind::trace::ha637c64ce894333a
[INFO] [stderr]                                  at /rustc/82e1608dfa6e0b5569232559e3d385fea5a93112/library/std/src/../../backtrace/src/backtrace/libunwind.rs:104:5
[INFO] [stderr]      1:     0x55e85b62113c - std::backtrace_rs::backtrace::trace_unsynchronized::h47f62dea28e0c88d
[INFO] [stderr]                                  at /rustc/82e1608dfa6e0b5569232559e3d385fea5a93112/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5
[INFO] [stderr]      2:     0x55e85b62113c - std::sys_common::backtrace::_print_fmt::h9eef0abe20ede486
[INFO] [stderr]                                  at /rustc/82e1608dfa6e0b5569232559e3d385fea5a93112/library/std/src/sys_common/backtrace.rs:67:5
[INFO] [stderr]      3:     0x55e85b62113c - <std::sys_common::backtrace::_print::DisplayBacktrace as core::fmt::Display>::fmt::hed7f999df88cc644
[INFO] [stderr]                                  at /rustc/82e1608dfa6e0b5569232559e3d385fea5a93112/library/std/src/sys_common/backtrace.rs:44:22
[INFO] [stderr]      4:     0x55e85b64d1b0 - core::fmt::rt::Argument::fmt::h1539a9308b8d058d
[INFO] [stderr]                                  at /rustc/82e1608dfa6e0b5569232559e3d385fea5a93112/library/core/src/fmt/rt.rs:142:9
[INFO] [stderr]      5:     0x55e85b64d1b0 - core::fmt::write::h3a39390d8560d9c9
[INFO] [stderr]                                  at /rustc/82e1608dfa6e0b5569232559e3d385fea5a93112/library/core/src/fmt/mod.rs:1120:17
[INFO] [stderr]      6:     0x55e85b61e41f - std::io::Write::write_fmt::h5fc9997dfe05f882
[INFO] [stderr]                                  at /rustc/82e1608dfa6e0b5569232559e3d385fea5a93112/library/std/src/io/mod.rs:1762:15
[INFO] [stderr]      7:     0x55e85b620f24 - std::sys_common::backtrace::_print::h894006fb5c6f3d45
[INFO] [stderr]                                  at /rustc/82e1608dfa6e0b5569232559e3d385fea5a93112/library/std/src/sys_common/backtrace.rs:47:5
[INFO] [stderr]      8:     0x55e85b620f24 - std::sys_common::backtrace::print::h23a2d212c6fff936
[INFO] [stderr]                                  at /rustc/82e1608dfa6e0b5569232559e3d385fea5a93112/library/std/src/sys_common/backtrace.rs:34:9
[INFO] [stderr]      9:     0x55e85b622737 - std::panicking::default_hook::{{closure}}::h8a1d2ee00185001a
[INFO] [stderr]     10:     0x55e85b62249f - std::panicking::default_hook::h6038f2eba384e475
[INFO] [stderr]                                  at /rustc/82e1608dfa6e0b5569232559e3d385fea5a93112/library/std/src/panicking.rs:292:9
[INFO] [stderr]     11:     0x55e85b622bb8 - std::panicking::rust_panic_with_hook::h2b5517d590cab22e
[INFO] [stderr]                                  at /rustc/82e1608dfa6e0b5569232559e3d385fea5a93112/library/std/src/panicking.rs:779:13
[INFO] [stderr]     12:     0x55e85b622a9e - std::panicking::begin_panic_handler::{{closure}}::h233112c06e0ef43e
[INFO] [stderr]                                  at /rustc/82e1608dfa6e0b5569232559e3d385fea5a93112/library/std/src/panicking.rs:657:13
[INFO] [stderr]     13:     0x55e85b621606 - std::sys_common::backtrace::__rust_end_short_backtrace::h6e893f24d7ebbff8
[INFO] [stderr]                                  at /rustc/82e1608dfa6e0b5569232559e3d385fea5a93112/library/std/src/sys_common/backtrace.rs:170:18
[INFO] [stderr]     14:     0x55e85b622802 - rust_begin_unwind
[INFO] [stderr]                                  at /rustc/82e1608dfa6e0b5569232559e3d385fea5a93112/library/std/src/panicking.rs:645:5
[INFO] [stderr]     15:     0x55e85b0d17b5 - core::panicking::panic_fmt::hbf0e066aabfa482c
[INFO] [stderr]                                  at /rustc/82e1608dfa6e0b5569232559e3d385fea5a93112/library/core/src/panicking.rs:72:14
[INFO] [stderr]     16:     0x55e85b5be901 - autotools::fail::h0e01008d70dccbd9
[INFO] [stderr]     17:     0x55e85b5bcc75 - autotools::Config::build::hb757d082235b1ee3
[INFO] [stderr]     18:     0x55e85b0de618 - build_script_build::main::h33db8fd3193256dd
[INFO] [stderr]     19:     0x55e85b0dac33 - core::ops::function::FnOnce::call_once::hbb5cd864286b1a22
[INFO] [stderr]     20:     0x55e85b0d3496 - std::sys_common::backtrace::__rust_begin_short_backtrace::h4fb540851c967afe
[INFO] [stderr]     21:     0x55e85b0da249 - std::rt::lang_start::{{closure}}::hf2b2f710b55ecf0c
[INFO] [stderr]     22:     0x55e85b619c67 - core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once::hd95060ecd5e1ca24
[INFO] [stderr]                                  at /rustc/82e1608dfa6e0b5569232559e3d385fea5a93112/library/core/src/ops/function.rs:284:13
[INFO] [stderr]     23:     0x55e85b619c67 - std::panicking::try::do_call::h6e8cf51db32a6e4b
[INFO] [stderr]                                  at /rustc/82e1608dfa6e0b5569232559e3d385fea5a93112/library/std/src/panicking.rs:552:40
[INFO] [stderr]     24:     0x55e85b619c67 - std::panicking::try::h3a52eefe24fe3c29
[INFO] [stderr]                                  at /rustc/82e1608dfa6e0b5569232559e3d385fea5a93112/library/std/src/panicking.rs:516:19
[INFO] [stderr]     25:     0x55e85b619c67 - std::panic::catch_unwind::h24c28c23c02c3841
[INFO] [stderr]                                  at /rustc/82e1608dfa6e0b5569232559e3d385fea5a93112/library/std/src/panic.rs:142:14
[INFO] [stderr]     26:     0x55e85b619c67 - std::rt::lang_start_internal::{{closure}}::h705d3c9cbc06ef47
[INFO] [stderr]                                  at /rustc/82e1608dfa6e0b5569232559e3d385fea5a93112/library/std/src/rt.rs:148:48
[INFO] [stderr]     27:     0x55e85b619c67 - std::panicking::try::do_call::ha21f52ba13158470
[INFO] [stderr]                                  at /rustc/82e1608dfa6e0b5569232559e3d385fea5a93112/library/std/src/panicking.rs:552:40
[INFO] [stderr]     28:     0x55e85b619c67 - std::panicking::try::h5581346bf6aeb1f8
[INFO] [stderr]                                  at /rustc/82e1608dfa6e0b5569232559e3d385fea5a93112/library/std/src/panicking.rs:516:19
[INFO] [stderr]     29:     0x55e85b619c67 - std::panic::catch_unwind::h7919645a6b72e25b
[INFO] [stderr]                                  at /rustc/82e1608dfa6e0b5569232559e3d385fea5a93112/library/std/src/panic.rs:142:14
[INFO] [stderr]     30:     0x55e85b619c67 - std::rt::lang_start_internal::h12de51168669836e
[INFO] [stderr]                                  at /rustc/82e1608dfa6e0b5569232559e3d385fea5a93112/library/std/src/rt.rs:148:20
[INFO] [stderr]     31:     0x55e85b0da227 - std::rt::lang_start::h0a9326bf91eb7d7d
[INFO] [stderr]     32:     0x55e85b0dec35 - main
[INFO] [stderr]     33:     0x7fcc6a618d90 - <unknown>
[INFO] [stderr]     34:     0x7fcc6a618e40 - __libc_start_main
[INFO] [stderr]     35:     0x55e85b0d2085 - _start
[INFO] [stderr]     36:                0x0 - <unknown>
[INFO] running `Command { std: "docker" "inspect" "adc3dd269088ec257333dfe5ebd2c4166dbaf73de533c86376de3502b6db1256", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "adc3dd269088ec257333dfe5ebd2c4166dbaf73de533c86376de3502b6db1256", kill_on_drop: false }`
[INFO] [stdout] adc3dd269088ec257333dfe5ebd2c4166dbaf73de533c86376de3502b6db1256
