[INFO] fetching crate coverm 0.6.1...
[INFO] testing coverm-0.6.1 against 1.75.0 for beta-1.76-1
[INFO] extracting crate coverm 0.6.1 into /workspace/builds/worker-4-tc1/source
[INFO] validating manifest of crates.io crate coverm 0.6.1 on toolchain 1.75.0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.75.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate coverm 0.6.1
[INFO] finished tweaking crates.io crate coverm 0.6.1
[INFO] tweaked toml for crates.io crate coverm 0.6.1 written to /workspace/builds/worker-4-tc1/source/Cargo.toml
[INFO] crate crates.io crate coverm 0.6.1 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.75.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+1.75.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
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[INFO] running `Command { std: "docker" "start" "-a" "578f9575d2e93bedafab189c3d3b104a555dd6ccd66dd81935e0310696e9bdf0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "578f9575d2e93bedafab189c3d3b104a555dd6ccd66dd81935e0310696e9bdf0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "578f9575d2e93bedafab189c3d3b104a555dd6ccd66dd81935e0310696e9bdf0", kill_on_drop: false }`
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+1.75.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
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[INFO] running `Command { std: "docker" "start" "-a" "d7cc80cf0f141da693bd45d318761e46f311b4cd1d9997d405155bda79bf4e0e", kill_on_drop: false }`
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[INFO] [stderr]    Compiling bstr v0.2.15
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[INFO] [stderr]    Compiling clap v2.33.3
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[INFO] [stderr]    Compiling checkm v0.1.0
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[INFO] [stderr]    Compiling rust-htslib v0.36.0
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[INFO] [stderr]    Compiling galah v0.3.0
[INFO] [stderr]    Compiling coverm v0.6.1 (/opt/rustwide/workdir)
[INFO] [stdout] warning: multiple lines skipped by escaped newline
[INFO] [stdout]    --> src/cli.rs:248:100
[INFO] [stdout]     |
[INFO] [stdout] 248 |           To fix, set the {} environment variable e.g. to set it to use the current directory: {}\n\n\
[INFO] [stdout]     |  ____________________________________________________________________________________________________^
[INFO] [stdout] 249 | |
[INFO] [stdout] 250 | |         {} Either is fine, CoverM determines which is being used by virtue of being less than \
[INFO] [stdout]     | |________^ skipping everything up to and including this point
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around index expression
[INFO] [stdout]    --> src/genome.rs:816:25
[INFO] [stdout]     |
[INFO] [stdout] 816 |     return &target_name[(0..offset)];
[INFO] [stdout]     |                         ^         ^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_parens)]` on by default
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]     |
[INFO] [stdout] 816 -     return &target_name[(0..offset)];
[INFO] [stdout] 816 +     return &target_name[0..offset];
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around index expression
[INFO] [stdout]   --> src/genome_exclusion.rs:59:35
[INFO] [stdout]    |
[INFO] [stdout] 59 |         let genome = &contig_name[(0..offset)];
[INFO] [stdout]    |                                   ^         ^
[INFO] [stdout]    |
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]    |
[INFO] [stdout] 59 -         let genome = &contig_name[(0..offset)];
[INFO] [stdout] 59 +         let genome = &contig_name[0..offset];
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: panic message is not a string literal
[INFO] [stdout]    --> src/mapping_parameters.rs:159:16
[INFO] [stdout]     |
[INFO] [stdout] 159 |           panic!(format!(
[INFO] [stdout]     |  ________________^
[INFO] [stdout] 160 | |             "The reference specified '{}' does not appear to exist",
[INFO] [stdout] 161 | |             &reference_path
[INFO] [stdout] 162 | |         ));
[INFO] [stdout]     | |_________^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this usage of `panic!()` is deprecated; it will be a hard error in Rust 2021
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/panic-macro-consistency.html>
[INFO] [stdout]     = note: the `panic!()` macro supports formatting, so there's no need for the `format!()` macro here
[INFO] [stdout]     = note: `#[warn(non_fmt_panics)]` on by default
[INFO] [stdout] help: remove the `format!(..)` macro call
[INFO] [stdout]     |
[INFO] [stdout] 159 ~         panic!(
[INFO] [stdout] 160 |             "The reference specified '{}' does not appear to exist",
[INFO] [stdout] 161 |             &reference_path
[INFO] [stdout] 162 ~         );
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: panic message is not a string literal
[INFO] [stdout]    --> src/mapping_parameters.rs:164:16
[INFO] [stdout]     |
[INFO] [stdout] 164 |           panic!(format!(
[INFO] [stdout]     |  ________________^
[INFO] [stdout] 165 | |             "The reference specified '{}' should be a file, not e.g. a directory",
[INFO] [stdout] 166 | |             &reference_path
[INFO] [stdout] 167 | |         ));
[INFO] [stdout]     | |_________^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this usage of `panic!()` is deprecated; it will be a hard error in Rust 2021
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/panic-macro-consistency.html>
[INFO] [stdout]     = note: the `panic!()` macro supports formatting, so there's no need for the `format!()` macro here
[INFO] [stdout] help: remove the `format!(..)` macro call
[INFO] [stdout]     |
[INFO] [stdout] 164 ~         panic!(
[INFO] [stdout] 165 |             "The reference specified '{}' should be a file, not e.g. a directory",
[INFO] [stdout] 166 |             &reference_path
[INFO] [stdout] 167 ~         );
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 5 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 46.32s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: buf_redux v0.8.4, partitions v0.2.4
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 3`
[INFO] running `Command { std: "docker" "inspect" "d7cc80cf0f141da693bd45d318761e46f311b4cd1d9997d405155bda79bf4e0e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d7cc80cf0f141da693bd45d318761e46f311b4cd1d9997d405155bda79bf4e0e", kill_on_drop: false }`
[INFO] [stdout] d7cc80cf0f141da693bd45d318761e46f311b4cd1d9997d405155bda79bf4e0e
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+1.75.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 1de250894d223e439cf4c17995d3885b843c1cf5b43acf8091e8710b6f486fdd
[INFO] running `Command { std: "docker" "start" "-a" "1de250894d223e439cf4c17995d3885b843c1cf5b43acf8091e8710b6f486fdd", kill_on_drop: false }`
[INFO] [stderr]    Compiling cargo-husky v1.5.0
[INFO] [stderr]    Compiling colored v1.9.3
[INFO] [stderr]    Compiling difference v2.0.0
[INFO] [stderr]    Compiling environment v0.1.1
[INFO] [stdout] warning: multiple lines skipped by escaped newline
[INFO] [stdout]    --> src/cli.rs:248:100
[INFO] [stdout]     |
[INFO] [stdout] 248 |           To fix, set the {} environment variable e.g. to set it to use the current directory: {}\n\n\
[INFO] [stdout]     |  ____________________________________________________________________________________________________^
[INFO] [stdout] 249 | |
[INFO] [stdout] 250 | |         {} Either is fine, CoverM determines which is being used by virtue of being less than \
[INFO] [stdout]     | |________^ skipping everything up to and including this point
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around index expression
[INFO] [stdout]    --> src/genome.rs:816:25
[INFO] [stdout]     |
[INFO] [stdout] 816 |     return &target_name[(0..offset)];
[INFO] [stdout]     |                         ^         ^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_parens)]` on by default
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]     |
[INFO] [stdout] 816 -     return &target_name[(0..offset)];
[INFO] [stdout] 816 +     return &target_name[0..offset];
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around index expression
[INFO] [stdout]   --> src/genome_exclusion.rs:59:35
[INFO] [stdout]    |
[INFO] [stdout] 59 |         let genome = &contig_name[(0..offset)];
[INFO] [stdout]    |                                   ^         ^
[INFO] [stdout]    |
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]    |
[INFO] [stdout] 59 -         let genome = &contig_name[(0..offset)];
[INFO] [stdout] 59 +         let genome = &contig_name[0..offset];
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: panic message is not a string literal
[INFO] [stdout]    --> src/mapping_parameters.rs:159:16
[INFO] [stdout]     |
[INFO] [stdout] 159 |           panic!(format!(
[INFO] [stdout]     |  ________________^
[INFO] [stdout] 160 | |             "The reference specified '{}' does not appear to exist",
[INFO] [stdout] 161 | |             &reference_path
[INFO] [stdout] 162 | |         ));
[INFO] [stdout]     | |_________^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this usage of `panic!()` is deprecated; it will be a hard error in Rust 2021
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/panic-macro-consistency.html>
[INFO] [stdout]     = note: the `panic!()` macro supports formatting, so there's no need for the `format!()` macro here
[INFO] [stdout]     = note: `#[warn(non_fmt_panics)]` on by default
[INFO] [stdout] help: remove the `format!(..)` macro call
[INFO] [stdout]     |
[INFO] [stdout] 159 ~         panic!(
[INFO] [stdout] 160 |             "The reference specified '{}' does not appear to exist",
[INFO] [stdout] 161 |             &reference_path
[INFO] [stdout] 162 ~         );
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: panic message is not a string literal
[INFO] [stdout]    --> src/mapping_parameters.rs:164:16
[INFO] [stdout]     |
[INFO] [stdout] 164 |           panic!(format!(
[INFO] [stdout]     |  ________________^
[INFO] [stdout] 165 | |             "The reference specified '{}' should be a file, not e.g. a directory",
[INFO] [stdout] 166 | |             &reference_path
[INFO] [stdout] 167 | |         ));
[INFO] [stdout]     | |_________^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this usage of `panic!()` is deprecated; it will be a hard error in Rust 2021
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/panic-macro-consistency.html>
[INFO] [stdout]     = note: the `panic!()` macro supports formatting, so there's no need for the `format!()` macro here
[INFO] [stdout] help: remove the `format!(..)` macro call
[INFO] [stdout]     |
[INFO] [stdout] 164 ~         panic!(
[INFO] [stdout] 165 |             "The reference specified '{}' should be a file, not e.g. a directory",
[INFO] [stdout] 166 |             &reference_path
[INFO] [stdout] 167 ~         );
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 5 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]    Compiling assert_cli v0.6.3
[INFO] [stderr]    Compiling coverm v0.6.1 (/opt/rustwide/workdir)
[INFO] [stdout] warning: multiple lines skipped by escaped newline
[INFO] [stdout]    --> src/cli.rs:248:100
[INFO] [stdout]     |
[INFO] [stdout] 248 |           To fix, set the {} environment variable e.g. to set it to use the current directory: {}\n\n\
[INFO] [stdout]     |  ____________________________________________________________________________________________________^
[INFO] [stdout] 249 | |
[INFO] [stdout] 250 | |         {} Either is fine, CoverM determines which is being used by virtue of being less than \
[INFO] [stdout]     | |________^ skipping everything up to and including this point
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around index expression
[INFO] [stdout]    --> src/genome.rs:816:25
[INFO] [stdout]     |
[INFO] [stdout] 816 |     return &target_name[(0..offset)];
[INFO] [stdout]     |                         ^         ^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_parens)]` on by default
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]     |
[INFO] [stdout] 816 -     return &target_name[(0..offset)];
[INFO] [stdout] 816 +     return &target_name[0..offset];
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around index expression
[INFO] [stdout]   --> src/genome_exclusion.rs:59:35
[INFO] [stdout]    |
[INFO] [stdout] 59 |         let genome = &contig_name[(0..offset)];
[INFO] [stdout]    |                                   ^         ^
[INFO] [stdout]    |
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]    |
[INFO] [stdout] 59 -         let genome = &contig_name[(0..offset)];
[INFO] [stdout] 59 +         let genome = &contig_name[0..offset];
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: panic message is not a string literal
[INFO] [stdout]    --> src/mapping_parameters.rs:159:16
[INFO] [stdout]     |
[INFO] [stdout] 159 |           panic!(format!(
[INFO] [stdout]     |  ________________^
[INFO] [stdout] 160 | |             "The reference specified '{}' does not appear to exist",
[INFO] [stdout] 161 | |             &reference_path
[INFO] [stdout] 162 | |         ));
[INFO] [stdout]     | |_________^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this usage of `panic!()` is deprecated; it will be a hard error in Rust 2021
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/panic-macro-consistency.html>
[INFO] [stdout]     = note: the `panic!()` macro supports formatting, so there's no need for the `format!()` macro here
[INFO] [stdout]     = note: `#[warn(non_fmt_panics)]` on by default
[INFO] [stdout] help: remove the `format!(..)` macro call
[INFO] [stdout]     |
[INFO] [stdout] 159 ~         panic!(
[INFO] [stdout] 160 |             "The reference specified '{}' does not appear to exist",
[INFO] [stdout] 161 |             &reference_path
[INFO] [stdout] 162 ~         );
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: panic message is not a string literal
[INFO] [stdout]    --> src/mapping_parameters.rs:164:16
[INFO] [stdout]     |
[INFO] [stdout] 164 |           panic!(format!(
[INFO] [stdout]     |  ________________^
[INFO] [stdout] 165 | |             "The reference specified '{}' should be a file, not e.g. a directory",
[INFO] [stdout] 166 | |             &reference_path
[INFO] [stdout] 167 | |         ));
[INFO] [stdout]     | |_________^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this usage of `panic!()` is deprecated; it will be a hard error in Rust 2021
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/panic-macro-consistency.html>
[INFO] [stdout]     = note: the `panic!()` macro supports formatting, so there's no need for the `format!()` macro here
[INFO] [stdout] help: remove the `format!(..)` macro call
[INFO] [stdout]     |
[INFO] [stdout] 164 ~         panic!(
[INFO] [stdout] 165 |             "The reference specified '{}' should be a file, not e.g. a directory",
[INFO] [stdout] 166 |             &reference_path
[INFO] [stdout] 167 ~         );
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 5 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 5.66s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: buf_redux v0.8.4, partitions v0.2.4
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 3`
[INFO] running `Command { std: "docker" "inspect" "1de250894d223e439cf4c17995d3885b843c1cf5b43acf8091e8710b6f486fdd", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "1de250894d223e439cf4c17995d3885b843c1cf5b43acf8091e8710b6f486fdd", kill_on_drop: false }`
[INFO] [stdout] 1de250894d223e439cf4c17995d3885b843c1cf5b43acf8091e8710b6f486fdd
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+1.75.0" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 6193b788813282de9b23e01651926acb207e5f395b078fbcb6e6fea062e41a8f
[INFO] running `Command { std: "docker" "start" "-a" "6193b788813282de9b23e01651926acb207e5f395b078fbcb6e6fea062e41a8f", kill_on_drop: false }`
[INFO] [stderr] warning: multiple lines skipped by escaped newline
[INFO] [stderr]    --> src/cli.rs:248:100
[INFO] [stderr]     |
[INFO] [stderr] 248 |           To fix, set the {} environment variable e.g. to set it to use the current directory: {}\n\n\
[INFO] [stderr]     |  ____________________________________________________________________________________________________^
[INFO] [stderr] 249 | |
[INFO] [stderr] 250 | |         {} Either is fine, CoverM determines which is being used by virtue of being less than \
[INFO] [stderr]     | |________^ skipping everything up to and including this point
[INFO] [stderr] 
[INFO] [stderr] warning: unnecessary parentheses around index expression
[INFO] [stderr]    --> src/genome.rs:816:25
[INFO] [stderr]     |
[INFO] [stderr] 816 |     return &target_name[(0..offset)];
[INFO] [stderr]     |                         ^         ^
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(unused_parens)]` on by default
[INFO] [stderr] help: remove these parentheses
[INFO] [stderr]     |
[INFO] [stderr] 816 -     return &target_name[(0..offset)];
[INFO] [stderr] 816 +     return &target_name[0..offset];
[INFO] [stderr]     |
[INFO] [stderr] 
[INFO] [stderr] warning: unnecessary parentheses around index expression
[INFO] [stderr]   --> src/genome_exclusion.rs:59:35
[INFO] [stderr]    |
[INFO] [stderr] 59 |         let genome = &contig_name[(0..offset)];
[INFO] [stderr]    |                                   ^         ^
[INFO] [stderr]    |
[INFO] [stderr] help: remove these parentheses
[INFO] [stderr]    |
[INFO] [stderr] 59 -         let genome = &contig_name[(0..offset)];
[INFO] [stderr] 59 +         let genome = &contig_name[0..offset];
[INFO] [stderr]    |
[INFO] [stderr] 
[INFO] [stderr] warning: panic message is not a string literal
[INFO] [stderr]    --> src/mapping_parameters.rs:159:16
[INFO] [stderr]     |
[INFO] [stderr] 159 |           panic!(format!(
[INFO] [stderr]     |  ________________^
[INFO] [stderr] 160 | |             "The reference specified '{}' does not appear to exist",
[INFO] [stderr] 161 | |             &reference_path
[INFO] [stderr] 162 | |         ));
[INFO] [stderr]     | |_________^
[INFO] [stderr]     |
[INFO] [stderr]     = note: this usage of `panic!()` is deprecated; it will be a hard error in Rust 2021
[INFO] [stderr]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/panic-macro-consistency.html>
[INFO] [stderr]     = note: the `panic!()` macro supports formatting, so there's no need for the `format!()` macro here
[INFO] [stderr]     = note: `#[warn(non_fmt_panics)]` on by default
[INFO] [stderr] help: remove the `format!(..)` macro call
[INFO] [stderr]     |
[INFO] [stderr] 159 ~         panic!(
[INFO] [stderr] 160 |             "The reference specified '{}' does not appear to exist",
[INFO] [stderr] 161 |             &reference_path
[INFO] [stderr] 162 ~         );
[INFO] [stderr]     |
[INFO] [stderr] 
[INFO] [stderr] warning: panic message is not a string literal
[INFO] [stderr]    --> src/mapping_parameters.rs:164:16
[INFO] [stderr]     |
[INFO] [stderr] 164 |           panic!(format!(
[INFO] [stderr]     |  ________________^
[INFO] [stderr] 165 | |             "The reference specified '{}' should be a file, not e.g. a directory",
[INFO] [stderr] 166 | |             &reference_path
[INFO] [stderr] 167 | |         ));
[INFO] [stderr]     | |_________^
[INFO] [stderr]     |
[INFO] [stderr]     = note: this usage of `panic!()` is deprecated; it will be a hard error in Rust 2021
[INFO] [stderr]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/panic-macro-consistency.html>
[INFO] [stderr]     = note: the `panic!()` macro supports formatting, so there's no need for the `format!()` macro here
[INFO] [stderr] help: remove the `format!(..)` macro call
[INFO] [stderr]     |
[INFO] [stderr] 164 ~         panic!(
[INFO] [stderr] 165 |             "The reference specified '{}' should be a file, not e.g. a directory",
[INFO] [stderr] 166 |             &reference_path
[INFO] [stderr] 167 ~         );
[INFO] [stderr]     |
[INFO] [stderr] 
[INFO] [stderr] warning: `coverm` (lib) generated 5 warnings (run `cargo fix --lib -p coverm` to apply 4 suggestions)
[INFO] [stderr] warning: `coverm` (lib test) generated 5 warnings (5 duplicates)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.27s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: buf_redux v0.8.4, partitions v0.2.4
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 3`
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/coverm-0e94d116d13216b7)
[INFO] [stdout] 
[INFO] [stdout] running 78 tests
[INFO] [stdout] test contig::tests::test_one_contig_variance ... FAILED
[INFO] [stdout] test contig::tests::test_multiple_coverage_methods ... FAILED
[INFO] [stdout] test contig::tests::test_multiple_outputs_one_zero_no_print_zeroes ... FAILED
[INFO] [stdout] test contig::tests::test_julian_error ... FAILED
[INFO] [stdout] test contig::tests::test_contig_end_exclusion ... FAILED
[INFO] [stdout] test contig::tests::test_reads_not_counting_when_sufficient_min_covered ... FAILED
[INFO] [stdout] test contig::tests::test_one_genome_two_contigs_first_covered ... FAILED
[INFO] [stdout] test contig::tests::test_one_genome_two_contigs_first_covered_no_zeros ... FAILED
[INFO] [stdout] test contig::tests::test_one_read_of_pair_mapped ... FAILED
[INFO] [stdout] test contig::tests::test_trimmed_mean_bug ... FAILED
[INFO] [stdout] test contig::tests::test_variance_estimator_all_bases_covered ... FAILED
[INFO] [stdout] test coverage_printer::tests::test_dense_cached_printer_easy_normalised ... ok
[INFO] [stdout] test contig::tests::test_multiple_outputs_one_zero_no_print_zeroes_reverse_order ... FAILED
[INFO] [stdout] test coverage_printer::tests::test_dense_cached_printer_hello_world ... ok
[INFO] [stdout] test coverage_takers::tests::test_cached_hello_world ... ok
[INFO] [stdout] test coverage_takers::tests::test_cached_next ... ok
[INFO] [stdout] test coverage_takers::tests::test_cached_two_samples_matching ... ok
[INFO] [stdout] test coverage_takers::tests::test_cached_two_samples_mismatching ... ok
[INFO] [stdout] test contig::tests::test_sharded_bams_some_not_covered ... FAILED
[INFO] [stdout] test coverage_takers::tests::test_cached_next_one_coverage ... ok
[INFO] [stdout] test contig::tests::test_proper_pairs_only ... FAILED
[INFO] [stdout] test contig::tests::test_reads_not_counting_when_insufficient_min_covered ... FAILED
[INFO] [stdout] test filter::tests::test_filter_single_and_paired_reads ... FAILED
[INFO] [stdout] test filter::tests::test_filter_single_reads ... FAILED
[INFO] [stdout] test filter::tests::test_filter_single_and_paired_reads_inverse ... FAILED
[INFO] [stdout] test coverage_printer::tests::test_metabat_mode_printer_easy ... ok
[INFO] [stdout] test filter::tests::test_filter_single_reads_inverse ... FAILED
[INFO] [stdout] test filter::tests::test_one_bad_read ... FAILED
[INFO] [stdout] test filter::tests::test_hello_world ... FAILED
[INFO] [stdout] test filter::tests::test_hello_world_inverse ... FAILED
[INFO] [stdout] test genome::tests::test_fill_genome_length_backwards1 ... FAILED
[INFO] [stdout] test filter::tests::test_one_bad_read_inverse ... FAILED
[INFO] [stdout] test genome::tests::test_covered_bases_estimator ... FAILED
[INFO] [stdout] test genome::tests::test_covered_bases_estimator_contig_end_exclusion ... FAILED
[INFO] [stdout] test filter::tests::test_first_encountered_read_having_negative_insert_length ... FAILED
[INFO] [stdout] test genome::tests::test_fill_genome_length_backwards2 ... FAILED
[INFO] [stdout] test genome::tests::test_fill_genome_length_backwards3 ... FAILED
[INFO] [stdout] test genome::tests::test_genomes_and_contigs_reads_mapped ... FAILED
[INFO] [stdout] test genome::tests::test_julian_error ... FAILED
[INFO] [stdout] test genome::tests::test_one_genome_min_fraction_covered_just_ok ... FAILED
[INFO] [stdout] test genome::tests::test_multiple_outputs_one_zero_no_print_zeroes_separator_reverse ... FAILED
[INFO] [stdout] test genome::tests::test_multiple_outputs_one_zero_no_print_zeroes_single_genome ... FAILED
[INFO] [stdout] test genome::tests::test_multiple_outputs_one_zero_no_print_zeroes_single_genome_reverse ... FAILED
[INFO] [stdout] test genome::tests::test_multiple_outputs_one_zero_no_print_zeroes_separator ... FAILED
[INFO] [stdout] test genome::tests::test_one_genome_two_contigs_both_covered_contig_names ... FAILED
[INFO] [stdout] test genome::tests::test_one_genome_two_contigs_first_covered ... FAILED
[INFO] [stdout] test genome::tests::test_one_genome_min_fraction_covered_under_min_contig_names ... FAILED
[INFO] [stdout] test genome::tests::test_one_genome_two_contigs_both_covered ... FAILED
[INFO] [stdout] test genome::tests::test_one_genome_min_fraction_covered_just_ok_contig_names ... FAILED
[INFO] [stdout] test genome::tests::test_one_genome_min_fraction_covered_under_min ... FAILED
[INFO] [stdout] test genome::tests::test_one_genome_two_contigs_first_covered_contig_names ... FAILED
[INFO] [stdout] test genome::tests::test_one_genome_two_contigs_second_covered_contig_names ... FAILED
[INFO] [stdout] test genome::tests::test_one_genome_two_contigs_second_covered ... FAILED
[INFO] [stdout] test genome::tests::test_print_previous_zero_coverage_genomes2 ... FAILED
[INFO] [stdout] test genome::tests::test_print_previous_zero_coverage_genomes2_length_estimator ... FAILED
[INFO] [stdout] test genome::tests::test_read_count_below_min_covered ... FAILED
[INFO] [stdout] test genome::tests::test_read_count_calculator ... FAILED
[INFO] [stdout] test genome::tests::test_sharded_bams_with_zero_coverage ... FAILED
[INFO] [stdout] test genome::tests::test_sharded_bams_with_genome_exclusion ... FAILED
[INFO] [stdout] test genome::tests::test_two_contigs_pileup_counts_estimator_contig_names ... FAILED
[INFO] [stdout] test genome::tests::test_single_genome ... FAILED
[INFO] [stdout] test genome::tests::test_two_contigs_pileup_counts_estimator ... FAILED
[INFO] [stdout] test genome::tests::test_read_count_below_min_covered_genomes_and_contigs ... FAILED
[INFO] [stdout] test genome::tests::test_zero_coverage_genomes_contig_names ... FAILED
[INFO] [stdout] test genome_exclusion::tests::test_genomes_and_contigs_exclusion_filter ... ok
[INFO] [stdout] test genome::tests::test_two_contigs_trimmed_mean ... FAILED
[INFO] [stdout] test genome_exclusion::tests::test_separator_exclusion_filter ... ok
[INFO] [stdout] test genome_parsing::tests::test_contig_to_genome ... ok
[INFO] [stdout] test genome::tests::test_zero_coverage_genomes ... FAILED
[INFO] [stdout] test genome::tests::test_two_contigs_trimmed_mean_contig_names ... FAILED
[INFO] [stdout] test genome::tests::test_zero_coverage_genomes_after_min_fraction ... FAILED
[INFO] [stdout] test genome::tests::test_zero_coverage_genomes_contig_names_with_multiple_methods ... FAILED
[INFO] [stdout] test genome_parsing::tests::test_read_genome_fasta_files_one_genome ... FAILED
[INFO] [stdout] test genome_parsing::tests::test_read_genome_definition_file_with_comments ... FAILED
[INFO] [stdout] test shard_bam_reader::tests::test_shard_hello_world ... FAILED
[INFO] [stdout] test genome_parsing::tests::test_read_genome_definition_file ... FAILED
[INFO] [stderr] error: test failed, to rerun pass `--lib`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/deps/coverm-0e94d116d13216b7` (exit status: 1)
[INFO] [stderr] note: test exited abnormally; to see the full output pass --nocapture to the harness.
[INFO] running `Command { std: "docker" "inspect" "6193b788813282de9b23e01651926acb207e5f395b078fbcb6e6fea062e41a8f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "6193b788813282de9b23e01651926acb207e5f395b078fbcb6e6fea062e41a8f", kill_on_drop: false }`
[INFO] [stdout] 6193b788813282de9b23e01651926acb207e5f395b078fbcb6e6fea062e41a8f
