[INFO] fetching crate rosella 0.5.1...
[INFO] testing rosella-0.5.1 against 1.75.0 for beta-1.76-1
[INFO] extracting crate rosella 0.5.1 into /workspace/builds/worker-2-tc1/source
[INFO] validating manifest of crates.io crate rosella 0.5.1 on toolchain 1.75.0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.75.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate rosella 0.5.1
[INFO] finished tweaking crates.io crate rosella 0.5.1
[INFO] tweaked toml for crates.io crate rosella 0.5.1 written to /workspace/builds/worker-2-tc1/source/Cargo.toml
[INFO] crate crates.io crate rosella 0.5.1 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.75.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: `panic` setting is ignored for `bench` profile
[INFO] [stderr] warning: `panic` setting is ignored for `test` profile
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded ndarray-npy v0.8.1
[INFO] [stderr]   Downloaded environment v0.1.1
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[INFO] [stderr]   Downloaded petal-clustering v0.5.1
[INFO] [stderr]   Downloaded indxvec v1.8.6
[INFO] [stderr]   Downloaded bird_tool_utils v0.4.1
[INFO] [stderr]   Downloaded oci-spec v0.5.8
[INFO] [stderr]   Downloaded needletail v0.5.1
[INFO] [stderr]   Downloaded quantiles v0.7.1
[INFO] [stderr]   Downloaded buffer-redux v1.0.0
[INFO] [stderr]   Downloaded py_literal v0.4.0
[INFO] [stderr]   Downloaded skiplist v0.3.0
[INFO] [stderr]   Downloaded linfa-nn v0.6.1
[INFO] [stderr]   Downloaded assert_cli v0.6.3
[INFO] [stderr]   Downloaded ocipkg v0.2.8
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+1.75.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] c23d482498f91119d78df0b86e1b65c8a559238063f5922e172a674562fd3d5a
[INFO] running `Command { std: "docker" "start" "-a" "c23d482498f91119d78df0b86e1b65c8a559238063f5922e172a674562fd3d5a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "c23d482498f91119d78df0b86e1b65c8a559238063f5922e172a674562fd3d5a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c23d482498f91119d78df0b86e1b65c8a559238063f5922e172a674562fd3d5a", kill_on_drop: false }`
[INFO] [stdout] c23d482498f91119d78df0b86e1b65c8a559238063f5922e172a674562fd3d5a
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+1.75.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 2f6c46d96c97d9f1cd1d5abf4acfb22e55f9d10247fa7e8430ade548fd4ac851
[INFO] running `Command { std: "docker" "start" "-a" "2f6c46d96c97d9f1cd1d5abf4acfb22e55f9d10247fa7e8430ade548fd4ac851", kill_on_drop: false }`
[INFO] [stderr] warning: `panic` setting is ignored for `bench` profile
[INFO] [stderr] warning: `panic` setting is ignored for `test` profile
[INFO] [stderr]    Compiling autocfg v1.1.0
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[INFO] [stderr]    Compiling clap v4.4.8
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[INFO] [stderr]    Compiling serde_derive v1.0.192
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[INFO] [stderr]    Compiling ndarray v0.15.6
[INFO] [stderr]    Compiling tempfile v3.8.1
[INFO] [stderr]    Compiling env_logger v0.10.1
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[INFO] [stderr]    Compiling env_logger v0.6.2
[INFO] [stderr]    Compiling bird_tool_utils v0.4.1
[INFO] [stderr]    Compiling csv v1.3.0
[INFO] [stderr]    Compiling serde_yaml v0.8.26
[INFO] [stderr]    Compiling itertools v0.8.2
[INFO] [stderr]    Compiling roff v0.2.1
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
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[INFO] [stderr]    Compiling bzip2 v0.4.4
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[INFO] [stderr]    Compiling pest_derive v2.7.5
[INFO] [stderr]    Compiling py_literal v0.4.0
[INFO] [stderr]    Compiling ndarray-npy v0.8.1
[INFO] [stderr]    Compiling statrs v0.16.0
[INFO] [stderr]    Compiling rosella v0.5.1 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `Array2`
[INFO] [stdout]   --> src/recover/recover_engine.rs:15:42
[INFO] [stdout]    |
[INFO] [stdout] 15 | use ndarray::{Dim, ArrayBase, OwnedRepr, Array2};
[INFO] [stdout]    |                                          ^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]   --> src/kmers/kmer_counting.rs:63:13
[INFO] [stdout]    |
[INFO] [stdout] 63 |         let mut n_contigs = 0;
[INFO] [stdout]    |             ----^^^^^^^^^
[INFO] [stdout]    |             |
[INFO] [stdout]    |             help: remove this `mut`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_mut)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]   --> src/recover/recover_engine.rs:95:13
[INFO] [stdout]    |
[INFO] [stdout] 95 |         let mut coverage_table = calculate_coverage(m)?;
[INFO] [stdout]    |             ----^^^^^^^^^^^^^^
[INFO] [stdout]    |             |
[INFO] [stdout]    |             help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `embeddings`
[INFO] [stdout]    --> src/recover/recover_engine.rs:566:9
[INFO] [stdout]     |
[INFO] [stdout] 566 |         embeddings: Option<&ArrayBase<OwnedRepr<f64>, Dim<[usize; 2]>>>,
[INFO] [stdout]     |         ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_embeddings`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `DEFAULT_B` is never used
[INFO] [stdout]   --> src/recover/recover_engine.rs:44:7
[INFO] [stdout]    |
[INFO] [stdout] 44 | const DEFAULT_B: f64 = 1.5;
[INFO] [stdout]    |       ^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `MAX_ITERATIONS` is never used
[INFO] [stdout]   --> src/recover/recover_engine.rs:45:7
[INFO] [stdout]    |
[INFO] [stdout] 45 | const MAX_ITERATIONS: usize = 5;
[INFO] [stdout]    |       ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `filtering_rounds`, `ef_construction`, and `max_layers` are never read
[INFO] [stdout]   --> src/recover/recover_engine.rs:62:5
[INFO] [stdout]    |
[INFO] [stdout] 54 | struct RecoverEngine {
[INFO] [stdout]    |        ------------- fields in this struct
[INFO] [stdout] ...
[INFO] [stdout] 62 |     filtering_rounds: usize,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^
[INFO] [stdout] 63 |     ef_construction: usize,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^
[INFO] [stdout] 64 |     max_layers: usize,
[INFO] [stdout]    |     ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `bin_size`, `metabat_dist`, `tnf_distance`, `sketch_dist`, and `embedding_dist` are never read
[INFO] [stdout]    --> src/recover/recover_engine.rs:777:16
[INFO] [stdout]     |
[INFO] [stdout] 776 | struct BinMetrics {
[INFO] [stdout]     |        ---------- fields in this struct
[INFO] [stdout] 777 |     pub(crate) bin_size: usize,
[INFO] [stdout]     |                ^^^^^^^^
[INFO] [stdout] 778 |     pub(crate) metabat_dist: f32,
[INFO] [stdout]     |                ^^^^^^^^^^^^
[INFO] [stdout] 779 |     pub(crate) tnf_distance: f32,
[INFO] [stdout]     |                ^^^^^^^^^^^^
[INFO] [stdout] 780 |     pub(crate) sketch_dist: f32,
[INFO] [stdout]     |                ^^^^^^^^^^^
[INFO] [stdout] 781 |     pub(crate) embedding_dist: f32,
[INFO] [stdout]     |                ^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `BinMetrics` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 8 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `rosella` (bin "rosella")
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/1.75.0-x86_64-unknown-linux-gnu/bin/rustc --crate-name rosella --edition=2021 src/bin/rosella.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C lto -C codegen-units=16 -C debuginfo=2 -C metadata=7d75bf2bdccdfc94 -C extra-filename=-7d75bf2bdccdfc94 --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern anyhow=/opt/rustwide/target/debug/deps/libanyhow-d2e7b5907e7f1401.rlib --extern bird_tool_utils=/opt/rustwide/target/debug/deps/libbird_tool_utils-5b52c47ed123a024.rlib --extern bird_tool_utils_man=/opt/rustwide/target/debug/deps/libbird_tool_utils_man-fcff1aa0a7ac204e.rlib --extern clap=/opt/rustwide/target/debug/deps/libclap-4f2b3617fadd7e6d.rlib --extern clap_complete=/opt/rustwide/target/debug/deps/libclap_complete-878bcca8a7b833c7.rlib --extern csv=/opt/rustwide/target/debug/deps/libcsv-82616b7b0d1a02ef.rlib --extern env_logger=/opt/rustwide/target/debug/deps/libenv_logger-9b1f5583623040ef.rlib --extern indicatif=/opt/rustwide/target/debug/deps/libindicatif-a31d1bf26ceeff99.rlib --extern itertools=/opt/rustwide/target/debug/deps/libitertools-702d8f6e79d7dbbf.rlib --extern lazy_static=/opt/rustwide/target/debug/deps/liblazy_static-ca672e43dd25daed.rlib --extern log=/opt/rustwide/target/debug/deps/liblog-beef4705fbf342b2.rlib --extern ndarray=/opt/rustwide/target/debug/deps/libndarray-cbecef0936f34452.rlib --extern ndarray_npy=/opt/rustwide/target/debug/deps/libndarray_npy-e1f227cc84b338c7.rlib --extern needletail=/opt/rustwide/target/debug/deps/libneedletail-3fd0d3f5981158cd.rlib --extern rand=/opt/rustwide/target/debug/deps/librand-d7d3a210b984bc02.rlib --extern rayon=/opt/rustwide/target/debug/deps/librayon-a06a99b4b052313c.rlib --extern roff=/opt/rustwide/target/debug/deps/libroff-2ce6ab2469558f6f.rlib --extern rosella=/opt/rustwide/target/debug/deps/librosella-a8c53df4ac615db3.rlib --extern serde=/opt/rustwide/target/debug/deps/libserde-05e7da8f7233b935.rlib --extern serde_derive=/opt/rustwide/target/debug/deps/libserde_derive-c84fd8eae8bb976e.so --extern serde_json=/opt/rustwide/target/debug/deps/libserde_json-a66c3d21655cec06.rlib --extern serde_yaml=/opt/rustwide/target/debug/deps/libserde_yaml-70cf105b9b1bca8c.rlib --extern statrs=/opt/rustwide/target/debug/deps/libstatrs-c8068c8bad101e2d.rlib --extern tempfile=/opt/rustwide/target/debug/deps/libtempfile-7f65b519cb03745a.rlib --cap-lints=warn -L native=/opt/rustwide/target/debug/build/bzip2-sys-4b883309f27ebf94/out/lib -L native=/usr/lib/x86_64-linux-gnu` (signal: 9, SIGKILL: kill)
[INFO] running `Command { std: "docker" "inspect" "2f6c46d96c97d9f1cd1d5abf4acfb22e55f9d10247fa7e8430ade548fd4ac851", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2f6c46d96c97d9f1cd1d5abf4acfb22e55f9d10247fa7e8430ade548fd4ac851", kill_on_drop: false }`
[INFO] [stdout] 2f6c46d96c97d9f1cd1d5abf4acfb22e55f9d10247fa7e8430ade548fd4ac851
[INFO] testing rosella-0.5.1 against beta-2023-12-22 for beta-1.76-1
[INFO] extracting crate rosella 0.5.1 into /workspace/builds/worker-2-tc2/source
[INFO] validating manifest of crates.io crate rosella 0.5.1 on toolchain beta-2023-12-22
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2023-12-22" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate rosella 0.5.1
[INFO] finished tweaking crates.io crate rosella 0.5.1
[INFO] tweaked toml for crates.io crate rosella 0.5.1 written to /workspace/builds/worker-2-tc2/source/Cargo.toml
[INFO] crate crates.io crate rosella 0.5.1 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2023-12-22" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: `panic` setting is ignored for `bench` profile
[INFO] [stderr] warning: `panic` setting is ignored for `test` profile
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2023-12-22" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 4c2c5e41e0925a3f3054826420dab2e855fb11992d0ba85088c6d39bbf6ff6bb
[INFO] running `Command { std: "docker" "start" "-a" "4c2c5e41e0925a3f3054826420dab2e855fb11992d0ba85088c6d39bbf6ff6bb", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "4c2c5e41e0925a3f3054826420dab2e855fb11992d0ba85088c6d39bbf6ff6bb", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4c2c5e41e0925a3f3054826420dab2e855fb11992d0ba85088c6d39bbf6ff6bb", kill_on_drop: false }`
[INFO] [stdout] 4c2c5e41e0925a3f3054826420dab2e855fb11992d0ba85088c6d39bbf6ff6bb
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2023-12-22" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] cce71a76a640d0435a6ce9ed3935b06e6565d10d1d2c65a094d04e494b65ba7e
[INFO] running `Command { std: "docker" "start" "-a" "cce71a76a640d0435a6ce9ed3935b06e6565d10d1d2c65a094d04e494b65ba7e", kill_on_drop: false }`
[INFO] [stderr] warning: `panic` setting is ignored for `bench` profile
[INFO] [stderr] warning: `panic` setting is ignored for `test` profile
[INFO] [stderr]    Compiling autocfg v1.1.0
[INFO] [stderr]    Compiling proc-macro2 v1.0.69
[INFO] [stderr]    Compiling cfg-if v1.0.0
[INFO] [stderr]    Compiling libc v0.2.150
[INFO] [stderr]    Compiling unicode-ident v1.0.12
[INFO] [stderr]    Compiling libm v0.2.8
[INFO] [stderr]    Compiling memchr v2.6.4
[INFO] [stderr]    Compiling thiserror v1.0.50
[INFO] [stderr]    Compiling rand_core v0.4.2
[INFO] [stderr]    Compiling pkg-config v0.3.27
[INFO] [stderr]    Compiling crossbeam-utils v0.8.16
[INFO] [stderr]    Compiling ucd-trie v0.1.6
[INFO] [stderr]    Compiling scopeguard v1.2.0
[INFO] [stderr]    Compiling regex-syntax v0.8.2
[INFO] [stderr]    Compiling crc32fast v1.3.2
[INFO] [stderr]    Compiling rustix v0.38.24
[INFO] [stderr]    Compiling utf8parse v0.2.1
[INFO] [stderr]    Compiling autocfg v0.1.8
[INFO] [stderr]    Compiling anstyle-parse v0.2.2
[INFO] [stderr]    Compiling rand_core v0.3.1
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling num-traits v0.2.17
[INFO] [stderr]    Compiling num-integer v0.1.45
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[INFO] [stderr]    Compiling serde v1.0.192
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[INFO] [stderr]    Compiling rand_core v0.6.4
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[INFO] [stderr]    Compiling num-rational v0.4.1
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[INFO] [stderr]    Compiling either v1.9.0
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[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling clap_builder v4.4.8
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[INFO] [stderr]    Compiling regex-automata v0.4.3
[INFO] [stderr]    Compiling approx v0.5.1
[INFO] [stderr]    Compiling rand_pcg v0.1.2
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling rand_chacha v0.1.1
[INFO] [stderr]    Compiling indexmap v1.9.3
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling log v0.4.20
[INFO] [stderr]    Compiling termcolor v1.4.0
[INFO] [stderr]    Compiling ryu v1.0.15
[INFO] [stderr]    Compiling rand_distr v0.4.3
[INFO] [stderr]    Compiling rayon v1.8.0
[INFO] [stderr]    Compiling rand v0.6.5
[INFO] [stderr]    Compiling humantime v2.1.0
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling fastrand v2.0.1
[INFO] [stderr]    Compiling simba v0.6.0
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[INFO] [stderr]    Compiling roff v0.1.0
[INFO] [stderr]    Compiling itoa v1.0.9
[INFO] [stderr]    Compiling safemem v0.3.3
[INFO] [stderr]    Compiling anyhow v1.0.75
[INFO] [stderr]    Compiling serde_json v1.0.108
[INFO] [stderr]    Compiling linked-hash-map v0.5.6
[INFO] [stderr]    Compiling hashbrown v0.12.3
[INFO] [stderr]    Compiling buffer-redux v1.0.0
[INFO] [stderr]    Compiling bird_tool_utils-man v0.4.0
[INFO] [stderr]    Compiling yaml-rust v0.4.5
[INFO] [stderr]    Compiling humantime v1.3.0
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[INFO] [stderr]    Compiling console v0.15.7
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling is-terminal v0.4.9
[INFO] [stderr]    Compiling tempfile v3.8.1
[INFO] [stderr]    Compiling rand_os v0.1.3
[INFO] [stderr]    Compiling csv-core v0.1.11
[INFO] [stderr]    Compiling rand_isaac v0.1.1
[INFO] [stderr]    Compiling thiserror-impl v1.0.50
[INFO] [stderr]    Compiling regex v1.10.2
[INFO] [stderr]    Compiling rand_hc v0.1.0
[INFO] [stderr]    Compiling rand_xorshift v0.1.1
[INFO] [stderr]    Compiling rand_jitter v0.1.4
[INFO] [stderr]    Compiling clap v4.4.8
[INFO] [stderr]    Compiling bytecount v0.6.7
[INFO] [stderr]    Compiling number_prefix v0.4.0
[INFO] [stderr]    Compiling version-compare v0.1.1
[INFO] [stderr]    Compiling clap_complete v4.4.4
[INFO] [stderr]    Compiling serde_derive v1.0.192
[INFO] [stderr]    Compiling itertools v0.8.2
[INFO] [stderr]    Compiling ndarray v0.15.6
[INFO] [stderr]    Compiling env_logger v0.10.1
[INFO] [stderr]    Compiling indicatif v0.16.2
[INFO] [stderr]    Compiling env_logger v0.6.2
[INFO] [stderr]    Compiling roff v0.2.1
[INFO] [stderr]    Compiling serde_yaml v0.8.26
[INFO] [stderr]    Compiling csv v1.3.0
[INFO] [stderr]    Compiling bird_tool_utils v0.4.1
[INFO] [stderr]    Compiling pest v2.7.5
[INFO] [stderr]    Compiling zip v0.5.13
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]    Compiling pest_meta v2.7.5
[INFO] [stderr]    Compiling nalgebra v0.29.0
[INFO] [stderr]    Compiling pest_generator v2.7.5
[INFO] [stderr]    Compiling pest_derive v2.7.5
[INFO] [stderr]    Compiling py_literal v0.4.0
[INFO] [stderr]    Compiling ndarray-npy v0.8.1
[INFO] [stderr]    Compiling bzip2 v0.4.4
[INFO] [stderr]    Compiling needletail v0.5.1
[INFO] [stderr]    Compiling statrs v0.16.0
[INFO] [stderr]    Compiling rosella v0.5.1 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `Array2`
[INFO] [stdout]   --> src/recover/recover_engine.rs:15:42
[INFO] [stdout]    |
[INFO] [stdout] 15 | use ndarray::{Dim, ArrayBase, OwnedRepr, Array2};
[INFO] [stdout]    |                                          ^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]   --> src/kmers/kmer_counting.rs:63:13
[INFO] [stdout]    |
[INFO] [stdout] 63 |         let mut n_contigs = 0;
[INFO] [stdout]    |             ----^^^^^^^^^
[INFO] [stdout]    |             |
[INFO] [stdout]    |             help: remove this `mut`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_mut)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]   --> src/recover/recover_engine.rs:95:13
[INFO] [stdout]    |
[INFO] [stdout] 95 |         let mut coverage_table = calculate_coverage(m)?;
[INFO] [stdout]    |             ----^^^^^^^^^^^^^^
[INFO] [stdout]    |             |
[INFO] [stdout]    |             help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `embeddings`
[INFO] [stdout]    --> src/recover/recover_engine.rs:566:9
[INFO] [stdout]     |
[INFO] [stdout] 566 |         embeddings: Option<&ArrayBase<OwnedRepr<f64>, Dim<[usize; 2]>>>,
[INFO] [stdout]     |         ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_embeddings`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `DEFAULT_B` is never used
[INFO] [stdout]   --> src/recover/recover_engine.rs:44:7
[INFO] [stdout]    |
[INFO] [stdout] 44 | const DEFAULT_B: f64 = 1.5;
[INFO] [stdout]    |       ^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `MAX_ITERATIONS` is never used
[INFO] [stdout]   --> src/recover/recover_engine.rs:45:7
[INFO] [stdout]    |
[INFO] [stdout] 45 | const MAX_ITERATIONS: usize = 5;
[INFO] [stdout]    |       ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `filtering_rounds`, `ef_construction`, and `max_layers` are never read
[INFO] [stdout]   --> src/recover/recover_engine.rs:62:5
[INFO] [stdout]    |
[INFO] [stdout] 54 | struct RecoverEngine {
[INFO] [stdout]    |        ------------- fields in this struct
[INFO] [stdout] ...
[INFO] [stdout] 62 |     filtering_rounds: usize,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^
[INFO] [stdout] 63 |     ef_construction: usize,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^
[INFO] [stdout] 64 |     max_layers: usize,
[INFO] [stdout]    |     ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `bin_size`, `metabat_dist`, `tnf_distance`, `sketch_dist`, and `embedding_dist` are never read
[INFO] [stdout]    --> src/recover/recover_engine.rs:777:16
[INFO] [stdout]     |
[INFO] [stdout] 776 | struct BinMetrics {
[INFO] [stdout]     |        ---------- fields in this struct
[INFO] [stdout] 777 |     pub(crate) bin_size: usize,
[INFO] [stdout]     |                ^^^^^^^^
[INFO] [stdout] 778 |     pub(crate) metabat_dist: f32,
[INFO] [stdout]     |                ^^^^^^^^^^^^
[INFO] [stdout] 779 |     pub(crate) tnf_distance: f32,
[INFO] [stdout]     |                ^^^^^^^^^^^^
[INFO] [stdout] 780 |     pub(crate) sketch_dist: f32,
[INFO] [stdout]     |                ^^^^^^^^^^^
[INFO] [stdout] 781 |     pub(crate) embedding_dist: f32,
[INFO] [stdout]     |                ^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `BinMetrics` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 8 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `rosella` (bin "rosella")
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/beta-2023-12-22-x86_64-unknown-linux-gnu/bin/rustc --crate-name rosella --edition=2021 src/bin/rosella.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C lto -C codegen-units=16 -C debuginfo=2 -C metadata=fc3ed8715382a31d -C extra-filename=-fc3ed8715382a31d --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern anyhow=/opt/rustwide/target/debug/deps/libanyhow-8503a7516d3fcede.rlib --extern bird_tool_utils=/opt/rustwide/target/debug/deps/libbird_tool_utils-c75dd3f8d600e811.rlib --extern bird_tool_utils_man=/opt/rustwide/target/debug/deps/libbird_tool_utils_man-dea3d82ba3121078.rlib --extern clap=/opt/rustwide/target/debug/deps/libclap-1e9ccd6bb496637f.rlib --extern clap_complete=/opt/rustwide/target/debug/deps/libclap_complete-97e97914c4d93a7c.rlib --extern csv=/opt/rustwide/target/debug/deps/libcsv-2ca9465e76171942.rlib --extern env_logger=/opt/rustwide/target/debug/deps/libenv_logger-81793b5787293a67.rlib --extern indicatif=/opt/rustwide/target/debug/deps/libindicatif-1af83e3aa8c6fb84.rlib --extern itertools=/opt/rustwide/target/debug/deps/libitertools-6c803f1f2ef5c125.rlib --extern lazy_static=/opt/rustwide/target/debug/deps/liblazy_static-a6d0165fae9f93b1.rlib --extern log=/opt/rustwide/target/debug/deps/liblog-460d7da4a2d083dc.rlib --extern ndarray=/opt/rustwide/target/debug/deps/libndarray-5265ebe6eb0eb5ed.rlib --extern ndarray_npy=/opt/rustwide/target/debug/deps/libndarray_npy-98406a9693b326e7.rlib --extern needletail=/opt/rustwide/target/debug/deps/libneedletail-34cbfabcdb07e708.rlib --extern rand=/opt/rustwide/target/debug/deps/librand-c50b03f082702757.rlib --extern rayon=/opt/rustwide/target/debug/deps/librayon-7499df7d15c9a8f1.rlib --extern roff=/opt/rustwide/target/debug/deps/libroff-08ae4b00cc86fda5.rlib --extern rosella=/opt/rustwide/target/debug/deps/librosella-49c841515f396799.rlib --extern serde=/opt/rustwide/target/debug/deps/libserde-dfc47e92ce46df14.rlib --extern serde_derive=/opt/rustwide/target/debug/deps/libserde_derive-5d9450d1d2977c2c.so --extern serde_json=/opt/rustwide/target/debug/deps/libserde_json-bce16ed91421aa50.rlib --extern serde_yaml=/opt/rustwide/target/debug/deps/libserde_yaml-b50f18312fb6ea33.rlib --extern statrs=/opt/rustwide/target/debug/deps/libstatrs-b62254d54bf4ed8b.rlib --extern tempfile=/opt/rustwide/target/debug/deps/libtempfile-17db86ec6f6580fc.rlib --cap-lints=warn -L native=/opt/rustwide/target/debug/build/bzip2-sys-c63aa4158d6ba23a/out/lib -L native=/usr/lib/x86_64-linux-gnu` (signal: 9, SIGKILL: kill)
[INFO] running `Command { std: "docker" "inspect" "cce71a76a640d0435a6ce9ed3935b06e6565d10d1d2c65a094d04e494b65ba7e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "cce71a76a640d0435a6ce9ed3935b06e6565d10d1d2c65a094d04e494b65ba7e", kill_on_drop: false }`
[INFO] [stdout] cce71a76a640d0435a6ce9ed3935b06e6565d10d1d2c65a094d04e494b65ba7e
