[INFO] fetching crate libprosic 0.7.3...
[INFO] testing libprosic-0.7.3 against 1.75.0 for beta-1.76-1
[INFO] extracting crate libprosic 0.7.3 into /workspace/builds/worker-0-tc1/source
[INFO] validating manifest of crates.io crate libprosic 0.7.3 on toolchain 1.75.0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.75.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate libprosic 0.7.3
[INFO] finished tweaking crates.io crate libprosic 0.7.3
[INFO] tweaked toml for crates.io crate libprosic 0.7.3 written to /workspace/builds/worker-0-tc1/source/Cargo.toml
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.75.0" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.75.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
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[INFO] [stderr]    Compiling libprosic v0.7.3 (/opt/rustwide/workdir)
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:62:20
[INFO] [stdout]    |
[INFO] [stdout] 62 |     let variants = try!(utils::collect_variants(
[INFO] [stdout]    |                    ^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:70:21
[INFO] [stdout]    |
[INFO] [stdout] 70 |     let chrom_seq = try!(reference_buffer.seq(&chrom));
[INFO] [stdout]    |                     ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:75:18
[INFO] [stdout]    |
[INFO] [stdout] 75 |             Some(try!(joint_model.pileup(
[INFO] [stdout]    |                  ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/call/pairwise.rs:159:26
[INFO] [stdout]     |
[INFO] [stdout] 159 |         let mut writer = try!(csv::WriterBuilder::new()
[INFO] [stdout]     |                          ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/model/sample.rs:76:17
[INFO] [stdout]    |
[INFO] [stdout] 76 |                 try!(self.reader.fetch(tid, window_start, end));
[INFO] [stdout]    |                 ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred
[INFO] [stdout]    --> src/model/evidence/reads.rs:335:1
[INFO] [stdout]     |
[INFO] [stdout] 335 | / lazy_static! {
[INFO] [stdout] 336 | |     static ref PROB_CONFUSION: LogProb = LogProb::from(Prob(0.3333));
[INFO] [stdout] 337 | | }
[INFO] [stdout]     | |_^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this warning originates in the macro `__lazy_static_create` which comes from the expansion of the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred
[INFO] [stdout]   --> src/model/priors/single_cell_bulk.rs:26:1
[INFO] [stdout]    |
[INFO] [stdout] 26 | / cached! {
[INFO] [stdout] 27 | |     AMPLIF_CACHE: UnboundCache<(AlleleFreq, usize, usize), LogProb> = UnboundCache::new();
[INFO] [stdout] 28 | |     // Lodato et al. 2015, Science, Supplementary Information, pages 8f and Fig. S5 (A, C, E)
[INFO] [stdout] 29 | |     // TODO: allow for non-default Lodato model parameters, e.g. learned from the data at hand
[INFO] [stdout] ...  |
[INFO] [stdout] 96 | |     }
[INFO] [stdout] 97 | | }
[INFO] [stdout]    | |_^
[INFO] [stdout]    |
[INFO] [stdout]    = note: this warning originates in the macro `__lazy_static_create` which comes from the expansion of the macro `cached` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/call/pairwise.rs:55:62
[INFO] [stdout]    |
[INFO] [stdout] 55 | ) -> Result<Vec<Option<model::PairPileup<'a, A, B, P>>>, Box<Error>>
[INFO] [stdout]    |                                                              ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout]    = note: `#[warn(bare_trait_objects)]` on by default
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 55 | ) -> Result<Vec<Option<model::PairPileup<'a, A, B, P>>>, Box<dyn Error>>
[INFO] [stdout]    |                                                              +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/call/pairwise.rs:116:21
[INFO] [stdout]     |
[INFO] [stdout] 116 | ) -> Result<(), Box<Error>>
[INFO] [stdout]     |                     ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 116 | ) -> Result<(), Box<dyn Error>>
[INFO] [stdout]     |                     +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/estimation/alignment_properties.rs:40:68
[INFO] [stdout]    |
[INFO] [stdout] 40 |     pub fn estimate<R: bam::Read>(bam: &mut R) -> Result<Self, Box<Error>> {
[INFO] [stdout]    |                                                                    ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 40 |     pub fn estimate<R: bam::Read>(bam: &mut R) -> Result<Self, Box<dyn Error>> {
[INFO] [stdout]    |                                                                    +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/estimation/alignment_properties.rs:142:33
[INFO] [stdout]     |
[INFO] [stdout] 142 |     ) -> Result<InsertSize, Box<Error>> {
[INFO] [stdout]     |                                 ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 142 |     ) -> Result<InsertSize, Box<dyn Error>> {
[INFO] [stdout]     |                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/estimation/fdr/ev.rs:35:21
[INFO] [stdout]    |
[INFO] [stdout] 35 | ) -> Result<(), Box<Error>>
[INFO] [stdout]    |                     ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 35 | ) -> Result<(), Box<dyn Error>>
[INFO] [stdout]    |                     +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/mod.rs:275:41
[INFO] [stdout]     |
[INFO] [stdout] 275 |     ) -> Result<SinglePileup<A, P>, Box<Error>> {
[INFO] [stdout]     |                                         ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 275 |     ) -> Result<SinglePileup<A, P>, Box<dyn Error>> {
[INFO] [stdout]     |                                         +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/mod.rs:416:42
[INFO] [stdout]     |
[INFO] [stdout] 416 |     ) -> Result<PairPileup<A, B, P>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 416 |     ) -> Result<PairPileup<A, B, P>, Box<dyn Error>> {
[INFO] [stdout]     |                                          +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/fragments.rs:52:89
[INFO] [stdout]    |
[INFO] [stdout] 52 | pub fn estimate_insert_size(left: &bam::Record, right: &bam::Record) -> Result<u32, Box<Error>> {
[INFO] [stdout]    |                                                                                         ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 52 | pub fn estimate_insert_size(left: &bam::Record, right: &bam::Record) -> Result<u32, Box<dyn Error>> {
[INFO] [stdout]    |                                                                                         +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/fragments.rs:120:41
[INFO] [stdout]     |
[INFO] [stdout] 120 |     ) -> Result<(LogProb, LogProb), Box<Error>> {
[INFO] [stdout]     |                                         ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 120 |     ) -> Result<(LogProb, LogProb), Box<dyn Error>> {
[INFO] [stdout]     |                                         +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/reads.rs:30:49
[INFO] [stdout]    |
[INFO] [stdout] 30 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>>;
[INFO] [stdout]    |                                                 ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 30 |     ) -> Result<Option<(LogProb, LogProb)>, Box<dyn Error>>;
[INFO] [stdout]    |                                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/reads.rs:56:49
[INFO] [stdout]    |
[INFO] [stdout] 56 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]    |                                                 ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 56 |     ) -> Result<Option<(LogProb, LogProb)>, Box<dyn Error>> {
[INFO] [stdout]    |                                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/reads.rs:101:49
[INFO] [stdout]     |
[INFO] [stdout] 101 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]     |                                                 ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 101 |     ) -> Result<Option<(LogProb, LogProb)>, Box<dyn Error>> {
[INFO] [stdout]     |                                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/reads.rs:169:49
[INFO] [stdout]     |
[INFO] [stdout] 169 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]     |                                                 ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 169 |     ) -> Result<Option<(LogProb, LogProb)>, Box<dyn Error>> {
[INFO] [stdout]     |                                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/sample.rs:68:82
[INFO] [stdout]    |
[INFO] [stdout] 68 |     pub fn fill(&mut self, chrom: &[u8], start: u32, end: u32) -> Result<(), Box<Error>> {
[INFO] [stdout]    |                                                                                  ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 68 |     pub fn fill(&mut self, chrom: &[u8], start: u32, end: u32) -> Result<(), Box<dyn Error>> {
[INFO] [stdout]    |                                                                                  +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:220:39
[INFO] [stdout]     |
[INFO] [stdout] 220 |     ) -> Result<Vec<Observation>, Box<Error>> {
[INFO] [stdout]     |                                       ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 220 |     ) -> Result<Vec<Observation>, Box<dyn Error>> {
[INFO] [stdout]     |                                       +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:362:42
[INFO] [stdout]     |
[INFO] [stdout] 362 |     ) -> Result<Option<Observation>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 362 |     ) -> Result<Option<Observation>, Box<dyn Error>> {
[INFO] [stdout]     |                                          +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:409:42
[INFO] [stdout]     |
[INFO] [stdout] 409 |     ) -> Result<Option<Observation>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 409 |     ) -> Result<Option<Observation>, Box<dyn Error>> {
[INFO] [stdout]     |                                          +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/utils.rs:27:46
[INFO] [stdout]    |
[INFO] [stdout] 27 | ) -> Result<Vec<Option<model::Variant>>, Box<Error>> {
[INFO] [stdout]    |                                              ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 27 | ) -> Result<Vec<Option<model::Variant>>, Box<dyn Error>> {
[INFO] [stdout]    |                                              +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:232:39
[INFO] [stdout]     |
[INFO] [stdout] 232 | ) -> Result<Vec<Option<LogProb>>, Box<Error>> {
[INFO] [stdout]     |                                       ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 232 | ) -> Result<Vec<Option<LogProb>>, Box<dyn Error>> {
[INFO] [stdout]     |                                       +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:276:35
[INFO] [stdout]     |
[INFO] [stdout] 276 | ) -> Result<Vec<NotNan<f64>>, Box<Error>> {
[INFO] [stdout]     |                                   ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 276 | ) -> Result<Vec<NotNan<f64>>, Box<dyn Error>> {
[INFO] [stdout]     |                                   +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:317:21
[INFO] [stdout]     |
[INFO] [stdout] 317 | ) -> Result<(), Box<Error>> {
[INFO] [stdout]     |                     ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 317 | ) -> Result<(), Box<dyn Error>> {
[INFO] [stdout]     |                     +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:204:62
[INFO] [stdout]     |
[INFO] [stdout] 204 |     pub fn seq(&mut self, chrom: &[u8]) -> Result<&[u8], Box<Error>> {
[INFO] [stdout]     |                                                              ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 204 |     pub fn seq(&mut self, chrom: &[u8]) -> Result<&[u8], Box<dyn Error>> {
[INFO] [stdout]     |                                                              +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:367:30
[INFO] [stdout]     |
[INFO] [stdout] 367 |     ) -> Result<Overlap, Box<Error>> {
[INFO] [stdout]     |                              ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 367 |     ) -> Result<Overlap, Box<dyn Error>> {
[INFO] [stdout]     |                              +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/fragments.rs:56:68
[INFO] [stdout]    |
[INFO] [stdout] 56 |     let aln = |rec: &bam::Record, cigar| -> Result<(u32, u32), Box<Error>> {
[INFO] [stdout]    |                                                                    ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 56 |     let aln = |rec: &bam::Record, cigar| -> Result<(u32, u32), Box<dyn Error>> {
[INFO] [stdout]    |                                                                    +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:363:34
[INFO] [stdout]     |
[INFO] [stdout] 363 |         let mut evidence: RefMut<evidence::reads::AbstractReadEvidence> = match variant {
[INFO] [stdout]     |                                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 363 |         let mut evidence: RefMut<dyn evidence::reads::AbstractReadEvidence> = match variant {
[INFO] [stdout]     |                                  +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:412:44
[INFO] [stdout]     |
[INFO] [stdout] 412 |          -> Result<(LogProb, LogProb), Box<Error>> {
[INFO] [stdout]     |                                            ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 412 |          -> Result<(LogProb, LogProb), Box<dyn Error>> {
[INFO] [stdout]     |                                            +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 33 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 24.60s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nom v3.2.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
[INFO] running `Command { std: "docker" "inspect" "504cea2f7aa0bc7a3a913b553ec039424e26f291db74c36fd01ae19d67366a66", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "504cea2f7aa0bc7a3a913b553ec039424e26f291db74c36fd01ae19d67366a66", kill_on_drop: false }`
[INFO] [stdout] 504cea2f7aa0bc7a3a913b553ec039424e26f291db74c36fd01ae19d67366a66
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+1.75.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] f8749749577f0428e6b057a449a56c8f63d9b1726d6639f0e2f005606a8cd4f0
[INFO] running `Command { std: "docker" "start" "-a" "f8749749577f0428e6b057a449a56c8f63d9b1726d6639f0e2f005606a8cd4f0", kill_on_drop: false }`
[INFO] [stderr]    Compiling winapi-build v0.1.1
[INFO] [stderr]    Compiling winapi v0.2.8
[INFO] [stderr]    Compiling version_check v0.1.5
[INFO] [stderr]    Compiling miniz-sys v0.1.12
[INFO] [stderr]    Compiling memchr v0.1.11
[INFO] [stderr]    Compiling utf8-ranges v0.1.3
[INFO] [stderr]    Compiling safemem v0.3.3
[INFO] [stderr]    Compiling regex-syntax v0.3.9
[INFO] [stderr]    Compiling mime v0.2.6
[INFO] [stderr]    Compiling time v0.1.45
[INFO] [stderr]    Compiling num_cpus v1.16.0
[INFO] [stderr]    Compiling language-tags v0.2.2
[INFO] [stderr]    Compiling typeable v0.1.2
[INFO] [stderr]    Compiling traitobject v0.1.0
[INFO] [stderr]    Compiling fern v0.4.4
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:62:20
[INFO] [stdout]    |
[INFO] [stdout] 62 |     let variants = try!(utils::collect_variants(
[INFO] [stdout]    |                    ^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:70:21
[INFO] [stdout]    |
[INFO] [stdout] 70 |     let chrom_seq = try!(reference_buffer.seq(&chrom));
[INFO] [stdout]    |                     ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:75:18
[INFO] [stdout]    |
[INFO] [stdout] 75 |             Some(try!(joint_model.pileup(
[INFO] [stdout]    |                  ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/call/pairwise.rs:159:26
[INFO] [stdout]     |
[INFO] [stdout] 159 |         let mut writer = try!(csv::WriterBuilder::new()
[INFO] [stdout]     |                          ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/model/sample.rs:76:17
[INFO] [stdout]    |
[INFO] [stdout] 76 |                 try!(self.reader.fetch(tid, window_start, end));
[INFO] [stdout]    |                 ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred
[INFO] [stdout]    --> src/model/evidence/reads.rs:335:1
[INFO] [stdout]     |
[INFO] [stdout] 335 | / lazy_static! {
[INFO] [stdout] 336 | |     static ref PROB_CONFUSION: LogProb = LogProb::from(Prob(0.3333));
[INFO] [stdout] 337 | | }
[INFO] [stdout]     | |_^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this warning originates in the macro `__lazy_static_create` which comes from the expansion of the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred
[INFO] [stdout]   --> src/model/priors/single_cell_bulk.rs:26:1
[INFO] [stdout]    |
[INFO] [stdout] 26 | / cached! {
[INFO] [stdout] 27 | |     AMPLIF_CACHE: UnboundCache<(AlleleFreq, usize, usize), LogProb> = UnboundCache::new();
[INFO] [stdout] 28 | |     // Lodato et al. 2015, Science, Supplementary Information, pages 8f and Fig. S5 (A, C, E)
[INFO] [stdout] 29 | |     // TODO: allow for non-default Lodato model parameters, e.g. learned from the data at hand
[INFO] [stdout] ...  |
[INFO] [stdout] 96 | |     }
[INFO] [stdout] 97 | | }
[INFO] [stdout]    | |_^
[INFO] [stdout]    |
[INFO] [stdout]    = note: this warning originates in the macro `__lazy_static_create` which comes from the expansion of the macro `cached` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/call/pairwise.rs:55:62
[INFO] [stdout]    |
[INFO] [stdout] 55 | ) -> Result<Vec<Option<model::PairPileup<'a, A, B, P>>>, Box<Error>>
[INFO] [stdout]    |                                                              ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout]    = note: `#[warn(bare_trait_objects)]` on by default
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 55 | ) -> Result<Vec<Option<model::PairPileup<'a, A, B, P>>>, Box<dyn Error>>
[INFO] [stdout]    |                                                              +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/call/pairwise.rs:116:21
[INFO] [stdout]     |
[INFO] [stdout] 116 | ) -> Result<(), Box<Error>>
[INFO] [stdout]     |                     ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 116 | ) -> Result<(), Box<dyn Error>>
[INFO] [stdout]     |                     +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/estimation/alignment_properties.rs:40:68
[INFO] [stdout]    |
[INFO] [stdout] 40 |     pub fn estimate<R: bam::Read>(bam: &mut R) -> Result<Self, Box<Error>> {
[INFO] [stdout]    |                                                                    ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 40 |     pub fn estimate<R: bam::Read>(bam: &mut R) -> Result<Self, Box<dyn Error>> {
[INFO] [stdout]    |                                                                    +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/estimation/alignment_properties.rs:142:33
[INFO] [stdout]     |
[INFO] [stdout] 142 |     ) -> Result<InsertSize, Box<Error>> {
[INFO] [stdout]     |                                 ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 142 |     ) -> Result<InsertSize, Box<dyn Error>> {
[INFO] [stdout]     |                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/estimation/fdr/ev.rs:35:21
[INFO] [stdout]    |
[INFO] [stdout] 35 | ) -> Result<(), Box<Error>>
[INFO] [stdout]    |                     ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 35 | ) -> Result<(), Box<dyn Error>>
[INFO] [stdout]    |                     +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/mod.rs:275:41
[INFO] [stdout]     |
[INFO] [stdout] 275 |     ) -> Result<SinglePileup<A, P>, Box<Error>> {
[INFO] [stdout]     |                                         ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 275 |     ) -> Result<SinglePileup<A, P>, Box<dyn Error>> {
[INFO] [stdout]     |                                         +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/mod.rs:416:42
[INFO] [stdout]     |
[INFO] [stdout] 416 |     ) -> Result<PairPileup<A, B, P>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 416 |     ) -> Result<PairPileup<A, B, P>, Box<dyn Error>> {
[INFO] [stdout]     |                                          +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/fragments.rs:52:89
[INFO] [stdout]    |
[INFO] [stdout] 52 | pub fn estimate_insert_size(left: &bam::Record, right: &bam::Record) -> Result<u32, Box<Error>> {
[INFO] [stdout]    |                                                                                         ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 52 | pub fn estimate_insert_size(left: &bam::Record, right: &bam::Record) -> Result<u32, Box<dyn Error>> {
[INFO] [stdout]    |                                                                                         +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/fragments.rs:120:41
[INFO] [stdout]     |
[INFO] [stdout] 120 |     ) -> Result<(LogProb, LogProb), Box<Error>> {
[INFO] [stdout]     |                                         ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 120 |     ) -> Result<(LogProb, LogProb), Box<dyn Error>> {
[INFO] [stdout]     |                                         +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/reads.rs:30:49
[INFO] [stdout]    |
[INFO] [stdout] 30 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>>;
[INFO] [stdout]    |                                                 ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 30 |     ) -> Result<Option<(LogProb, LogProb)>, Box<dyn Error>>;
[INFO] [stdout]    |                                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/reads.rs:56:49
[INFO] [stdout]    |
[INFO] [stdout] 56 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]    |                                                 ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 56 |     ) -> Result<Option<(LogProb, LogProb)>, Box<dyn Error>> {
[INFO] [stdout]    |                                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/reads.rs:101:49
[INFO] [stdout]     |
[INFO] [stdout] 101 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]     |                                                 ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 101 |     ) -> Result<Option<(LogProb, LogProb)>, Box<dyn Error>> {
[INFO] [stdout]     |                                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/reads.rs:169:49
[INFO] [stdout]     |
[INFO] [stdout] 169 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]     |                                                 ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 169 |     ) -> Result<Option<(LogProb, LogProb)>, Box<dyn Error>> {
[INFO] [stdout]     |                                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/sample.rs:68:82
[INFO] [stdout]    |
[INFO] [stdout] 68 |     pub fn fill(&mut self, chrom: &[u8], start: u32, end: u32) -> Result<(), Box<Error>> {
[INFO] [stdout]    |                                                                                  ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 68 |     pub fn fill(&mut self, chrom: &[u8], start: u32, end: u32) -> Result<(), Box<dyn Error>> {
[INFO] [stdout]    |                                                                                  +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:220:39
[INFO] [stdout]     |
[INFO] [stdout] 220 |     ) -> Result<Vec<Observation>, Box<Error>> {
[INFO] [stdout]     |                                       ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 220 |     ) -> Result<Vec<Observation>, Box<dyn Error>> {
[INFO] [stdout]     |                                       +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:362:42
[INFO] [stdout]     |
[INFO] [stdout] 362 |     ) -> Result<Option<Observation>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 362 |     ) -> Result<Option<Observation>, Box<dyn Error>> {
[INFO] [stdout]     |                                          +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:409:42
[INFO] [stdout]     |
[INFO] [stdout] 409 |     ) -> Result<Option<Observation>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 409 |     ) -> Result<Option<Observation>, Box<dyn Error>> {
[INFO] [stdout]     |                                          +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/utils.rs:27:46
[INFO] [stdout]    |
[INFO] [stdout] 27 | ) -> Result<Vec<Option<model::Variant>>, Box<Error>> {
[INFO] [stdout]    |                                              ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 27 | ) -> Result<Vec<Option<model::Variant>>, Box<dyn Error>> {
[INFO] [stdout]    |                                              +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:232:39
[INFO] [stdout]     |
[INFO] [stdout] 232 | ) -> Result<Vec<Option<LogProb>>, Box<Error>> {
[INFO] [stdout]     |                                       ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 232 | ) -> Result<Vec<Option<LogProb>>, Box<dyn Error>> {
[INFO] [stdout]     |                                       +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:276:35
[INFO] [stdout]     |
[INFO] [stdout] 276 | ) -> Result<Vec<NotNan<f64>>, Box<Error>> {
[INFO] [stdout]     |                                   ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 276 | ) -> Result<Vec<NotNan<f64>>, Box<dyn Error>> {
[INFO] [stdout]     |                                   +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:317:21
[INFO] [stdout]     |
[INFO] [stdout] 317 | ) -> Result<(), Box<Error>> {
[INFO] [stdout]     |                     ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 317 | ) -> Result<(), Box<dyn Error>> {
[INFO] [stdout]     |                     +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:204:62
[INFO] [stdout]     |
[INFO] [stdout] 204 |     pub fn seq(&mut self, chrom: &[u8]) -> Result<&[u8], Box<Error>> {
[INFO] [stdout]     |                                                              ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 204 |     pub fn seq(&mut self, chrom: &[u8]) -> Result<&[u8], Box<dyn Error>> {
[INFO] [stdout]     |                                                              +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:367:30
[INFO] [stdout]     |
[INFO] [stdout] 367 |     ) -> Result<Overlap, Box<Error>> {
[INFO] [stdout]     |                              ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 367 |     ) -> Result<Overlap, Box<dyn Error>> {
[INFO] [stdout]     |                              +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/fragments.rs:56:68
[INFO] [stdout]    |
[INFO] [stdout] 56 |     let aln = |rec: &bam::Record, cigar| -> Result<(u32, u32), Box<Error>> {
[INFO] [stdout]    |                                                                    ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 56 |     let aln = |rec: &bam::Record, cigar| -> Result<(u32, u32), Box<dyn Error>> {
[INFO] [stdout]    |                                                                    +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:363:34
[INFO] [stdout]     |
[INFO] [stdout] 363 |         let mut evidence: RefMut<evidence::reads::AbstractReadEvidence> = match variant {
[INFO] [stdout]     |                                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 363 |         let mut evidence: RefMut<dyn evidence::reads::AbstractReadEvidence> = match variant {
[INFO] [stdout]     |                                  +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:412:44
[INFO] [stdout]     |
[INFO] [stdout] 412 |          -> Result<(LogProb, LogProb), Box<Error>> {
[INFO] [stdout]     |                                            ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 412 |          -> Result<(LogProb, LogProb), Box<dyn Error>> {
[INFO] [stdout]     |                                            +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 33 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]    Compiling base64 v0.9.3
[INFO] [stderr]    Compiling aho-corasick v0.5.3
[INFO] [stderr]    Compiling kernel32-sys v0.2.2
[INFO] [stderr]    Compiling unicase v1.4.2
[INFO] [stderr]    Compiling thread-id v2.0.0
[INFO] [stderr]    Compiling thread_local v0.2.7
[INFO] [stderr]    Compiling hyper v0.10.16
[INFO] [stderr]    Compiling flate2 v0.2.20
[INFO] [stderr]    Compiling regex v0.1.80
[INFO] [stderr]    Compiling env_logger v0.3.5
[INFO] [stderr]    Compiling libprosic v0.7.3 (/opt/rustwide/workdir)
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:62:20
[INFO] [stdout]    |
[INFO] [stdout] 62 |     let variants = try!(utils::collect_variants(
[INFO] [stdout]    |                    ^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:70:21
[INFO] [stdout]    |
[INFO] [stdout] 70 |     let chrom_seq = try!(reference_buffer.seq(&chrom));
[INFO] [stdout]    |                     ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:75:18
[INFO] [stdout]    |
[INFO] [stdout] 75 |             Some(try!(joint_model.pileup(
[INFO] [stdout]    |                  ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/call/pairwise.rs:159:26
[INFO] [stdout]     |
[INFO] [stdout] 159 |         let mut writer = try!(csv::WriterBuilder::new()
[INFO] [stdout]     |                          ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/model/sample.rs:76:17
[INFO] [stdout]    |
[INFO] [stdout] 76 |                 try!(self.reader.fetch(tid, window_start, end));
[INFO] [stdout]    |                 ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred
[INFO] [stdout]    --> src/model/evidence/reads.rs:335:1
[INFO] [stdout]     |
[INFO] [stdout] 335 | / lazy_static! {
[INFO] [stdout] 336 | |     static ref PROB_CONFUSION: LogProb = LogProb::from(Prob(0.3333));
[INFO] [stdout] 337 | | }
[INFO] [stdout]     | |_^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this warning originates in the macro `__lazy_static_create` which comes from the expansion of the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred
[INFO] [stdout]   --> src/model/priors/single_cell_bulk.rs:26:1
[INFO] [stdout]    |
[INFO] [stdout] 26 | / cached! {
[INFO] [stdout] 27 | |     AMPLIF_CACHE: UnboundCache<(AlleleFreq, usize, usize), LogProb> = UnboundCache::new();
[INFO] [stdout] 28 | |     // Lodato et al. 2015, Science, Supplementary Information, pages 8f and Fig. S5 (A, C, E)
[INFO] [stdout] 29 | |     // TODO: allow for non-default Lodato model parameters, e.g. learned from the data at hand
[INFO] [stdout] ...  |
[INFO] [stdout] 96 | |     }
[INFO] [stdout] 97 | | }
[INFO] [stdout]    | |_^
[INFO] [stdout]    |
[INFO] [stdout]    = note: this warning originates in the macro `__lazy_static_create` which comes from the expansion of the macro `cached` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/call/pairwise.rs:55:62
[INFO] [stdout]    |
[INFO] [stdout] 55 | ) -> Result<Vec<Option<model::PairPileup<'a, A, B, P>>>, Box<Error>>
[INFO] [stdout]    |                                                              ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout]    = note: `#[warn(bare_trait_objects)]` on by default
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 55 | ) -> Result<Vec<Option<model::PairPileup<'a, A, B, P>>>, Box<dyn Error>>
[INFO] [stdout]    |                                                              +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/call/pairwise.rs:116:21
[INFO] [stdout]     |
[INFO] [stdout] 116 | ) -> Result<(), Box<Error>>
[INFO] [stdout]     |                     ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 116 | ) -> Result<(), Box<dyn Error>>
[INFO] [stdout]     |                     +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/estimation/alignment_properties.rs:40:68
[INFO] [stdout]    |
[INFO] [stdout] 40 |     pub fn estimate<R: bam::Read>(bam: &mut R) -> Result<Self, Box<Error>> {
[INFO] [stdout]    |                                                                    ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 40 |     pub fn estimate<R: bam::Read>(bam: &mut R) -> Result<Self, Box<dyn Error>> {
[INFO] [stdout]    |                                                                    +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/estimation/alignment_properties.rs:142:33
[INFO] [stdout]     |
[INFO] [stdout] 142 |     ) -> Result<InsertSize, Box<Error>> {
[INFO] [stdout]     |                                 ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 142 |     ) -> Result<InsertSize, Box<dyn Error>> {
[INFO] [stdout]     |                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/estimation/fdr/ev.rs:35:21
[INFO] [stdout]    |
[INFO] [stdout] 35 | ) -> Result<(), Box<Error>>
[INFO] [stdout]    |                     ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 35 | ) -> Result<(), Box<dyn Error>>
[INFO] [stdout]    |                     +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/mod.rs:275:41
[INFO] [stdout]     |
[INFO] [stdout] 275 |     ) -> Result<SinglePileup<A, P>, Box<Error>> {
[INFO] [stdout]     |                                         ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 275 |     ) -> Result<SinglePileup<A, P>, Box<dyn Error>> {
[INFO] [stdout]     |                                         +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/mod.rs:416:42
[INFO] [stdout]     |
[INFO] [stdout] 416 |     ) -> Result<PairPileup<A, B, P>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 416 |     ) -> Result<PairPileup<A, B, P>, Box<dyn Error>> {
[INFO] [stdout]     |                                          +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/fragments.rs:52:89
[INFO] [stdout]    |
[INFO] [stdout] 52 | pub fn estimate_insert_size(left: &bam::Record, right: &bam::Record) -> Result<u32, Box<Error>> {
[INFO] [stdout]    |                                                                                         ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 52 | pub fn estimate_insert_size(left: &bam::Record, right: &bam::Record) -> Result<u32, Box<dyn Error>> {
[INFO] [stdout]    |                                                                                         +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/fragments.rs:120:41
[INFO] [stdout]     |
[INFO] [stdout] 120 |     ) -> Result<(LogProb, LogProb), Box<Error>> {
[INFO] [stdout]     |                                         ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 120 |     ) -> Result<(LogProb, LogProb), Box<dyn Error>> {
[INFO] [stdout]     |                                         +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/reads.rs:30:49
[INFO] [stdout]    |
[INFO] [stdout] 30 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>>;
[INFO] [stdout]    |                                                 ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 30 |     ) -> Result<Option<(LogProb, LogProb)>, Box<dyn Error>>;
[INFO] [stdout]    |                                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/reads.rs:56:49
[INFO] [stdout]    |
[INFO] [stdout] 56 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]    |                                                 ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 56 |     ) -> Result<Option<(LogProb, LogProb)>, Box<dyn Error>> {
[INFO] [stdout]    |                                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/reads.rs:101:49
[INFO] [stdout]     |
[INFO] [stdout] 101 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]     |                                                 ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 101 |     ) -> Result<Option<(LogProb, LogProb)>, Box<dyn Error>> {
[INFO] [stdout]     |                                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/reads.rs:169:49
[INFO] [stdout]     |
[INFO] [stdout] 169 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]     |                                                 ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 169 |     ) -> Result<Option<(LogProb, LogProb)>, Box<dyn Error>> {
[INFO] [stdout]     |                                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/sample.rs:68:82
[INFO] [stdout]    |
[INFO] [stdout] 68 |     pub fn fill(&mut self, chrom: &[u8], start: u32, end: u32) -> Result<(), Box<Error>> {
[INFO] [stdout]    |                                                                                  ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 68 |     pub fn fill(&mut self, chrom: &[u8], start: u32, end: u32) -> Result<(), Box<dyn Error>> {
[INFO] [stdout]    |                                                                                  +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:220:39
[INFO] [stdout]     |
[INFO] [stdout] 220 |     ) -> Result<Vec<Observation>, Box<Error>> {
[INFO] [stdout]     |                                       ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 220 |     ) -> Result<Vec<Observation>, Box<dyn Error>> {
[INFO] [stdout]     |                                       +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:362:42
[INFO] [stdout]     |
[INFO] [stdout] 362 |     ) -> Result<Option<Observation>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 362 |     ) -> Result<Option<Observation>, Box<dyn Error>> {
[INFO] [stdout]     |                                          +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:409:42
[INFO] [stdout]     |
[INFO] [stdout] 409 |     ) -> Result<Option<Observation>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 409 |     ) -> Result<Option<Observation>, Box<dyn Error>> {
[INFO] [stdout]     |                                          +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/utils.rs:27:46
[INFO] [stdout]    |
[INFO] [stdout] 27 | ) -> Result<Vec<Option<model::Variant>>, Box<Error>> {
[INFO] [stdout]    |                                              ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 27 | ) -> Result<Vec<Option<model::Variant>>, Box<dyn Error>> {
[INFO] [stdout]    |                                              +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:232:39
[INFO] [stdout]     |
[INFO] [stdout] 232 | ) -> Result<Vec<Option<LogProb>>, Box<Error>> {
[INFO] [stdout]     |                                       ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 232 | ) -> Result<Vec<Option<LogProb>>, Box<dyn Error>> {
[INFO] [stdout]     |                                       +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:276:35
[INFO] [stdout]     |
[INFO] [stdout] 276 | ) -> Result<Vec<NotNan<f64>>, Box<Error>> {
[INFO] [stdout]     |                                   ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 276 | ) -> Result<Vec<NotNan<f64>>, Box<dyn Error>> {
[INFO] [stdout]     |                                   +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:317:21
[INFO] [stdout]     |
[INFO] [stdout] 317 | ) -> Result<(), Box<Error>> {
[INFO] [stdout]     |                     ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 317 | ) -> Result<(), Box<dyn Error>> {
[INFO] [stdout]     |                     +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:204:62
[INFO] [stdout]     |
[INFO] [stdout] 204 |     pub fn seq(&mut self, chrom: &[u8]) -> Result<&[u8], Box<Error>> {
[INFO] [stdout]     |                                                              ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 204 |     pub fn seq(&mut self, chrom: &[u8]) -> Result<&[u8], Box<dyn Error>> {
[INFO] [stdout]     |                                                              +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:367:30
[INFO] [stdout]     |
[INFO] [stdout] 367 |     ) -> Result<Overlap, Box<Error>> {
[INFO] [stdout]     |                              ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 367 |     ) -> Result<Overlap, Box<dyn Error>> {
[INFO] [stdout]     |                              +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/fragments.rs:56:68
[INFO] [stdout]    |
[INFO] [stdout] 56 |     let aln = |rec: &bam::Record, cigar| -> Result<(u32, u32), Box<Error>> {
[INFO] [stdout]    |                                                                    ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 56 |     let aln = |rec: &bam::Record, cigar| -> Result<(u32, u32), Box<dyn Error>> {
[INFO] [stdout]    |                                                                    +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:363:34
[INFO] [stdout]     |
[INFO] [stdout] 363 |         let mut evidence: RefMut<evidence::reads::AbstractReadEvidence> = match variant {
[INFO] [stdout]     |                                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 363 |         let mut evidence: RefMut<dyn evidence::reads::AbstractReadEvidence> = match variant {
[INFO] [stdout]     |                                  +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:412:44
[INFO] [stdout]     |
[INFO] [stdout] 412 |          -> Result<(LogProb, LogProb), Box<Error>> {
[INFO] [stdout]     |                                            ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 412 |          -> Result<(LogProb, LogProb), Box<dyn Error>> {
[INFO] [stdout]     |                                            +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: this method call resolves to `<&[T; N] as IntoIterator>::into_iter` (due to backwards compatibility), but will resolve to <[T; N] as IntoIterator>::into_iter in Rust 2021
[INFO] [stdout]    --> src/model/sample.rs:612:79
[INFO] [stdout]     |
[INFO] [stdout] 612 |         for (record, true_alt_prob) in records.into_iter().zip(true_alt_probs.into_iter()) {
[INFO] [stdout]     |                                                                               ^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this changes meaning in Rust 2021
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/IntoIterator-for-arrays.html>
[INFO] [stdout]     = note: `#[warn(array_into_iter)]` on by default
[INFO] [stdout] help: use `.iter()` instead of `.into_iter()` to avoid ambiguity
[INFO] [stdout]     |
[INFO] [stdout] 612 |         for (record, true_alt_prob) in records.into_iter().zip(true_alt_probs.iter()) {
[INFO] [stdout]     |                                                                               ~~~~
[INFO] [stdout] help: or use `IntoIterator::into_iter(..)` instead of `.into_iter()` to explicitly iterate by value
[INFO] [stdout]     |
[INFO] [stdout] 612 |         for (record, true_alt_prob) in records.into_iter().zip(IntoIterator::into_iter(true_alt_probs)) {
[INFO] [stdout]     |                                                                ++++++++++++++++++++++++              ~
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: linking with `cc` failed: exit status: 1
[INFO] [stdout]   |
[INFO] [stdout]   = note: LC_ALL="C" PATH="/opt/rustwide/rustup-home/toolchains/1.75.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/bin:/opt/rustwide/cargo-home/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin" VSLANG="1033" "cc" "-m64" "/tmp/rustc78kcJW/symbols.o" "/opt/rustwide/target/debug/deps/libprosic-80c005c39a79e030.libprosic.231142e8f6ab1d71-cgu.00.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-80c005c39a79e030.libprosic.231142e8f6ab1d71-cgu.01.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-80c005c39a79e030.libprosic.231142e8f6ab1d71-cgu.02.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-80c005c39a79e030.libprosic.231142e8f6ab1d71-cgu.03.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-80c005c39a79e030.libprosic.231142e8f6ab1d71-cgu.04.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-80c005c39a79e030.libprosic.231142e8f6ab1d71-cgu.05.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-80c005c39a79e030.libprosic.231142e8f6ab1d71-cgu.06.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-80c005c39a79e030.libprosic.231142e8f6ab1d71-cgu.07.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-80c005c39a79e030.libprosic.231142e8f6ab1d71-cgu.08.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-80c005c39a79e030.libprosic.231142e8f6ab1d71-cgu.09.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-80c005c39a79e030.libprosic.231142e8f6ab1d71-cgu.10.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-80c005c39a79e030.libprosic.231142e8f6ab1d71-cgu.11.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-80c005c39a79e030.libprosic.231142e8f6ab1d71-cgu.12.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-80c005c39a79e030.libprosic.231142e8f6ab1d71-cgu.13.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-80c005c39a79e030.libprosic.231142e8f6ab1d71-cgu.14.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-80c005c39a79e030.libprosic.231142e8f6ab1d71-cgu.15.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-80c005c39a79e030.dp4cw8y7e9hpj49.rcgu.o" "-Wl,--as-needed" "-L" "/opt/rustwide/target/debug/deps" "-L" "/opt/rustwide/target/debug/build/miniz-sys-e2f2d9c8a84d9534/out" "-L" "/opt/rustwide/target/debug/build/rust-htslib-965d514ce97f3d6f/out" "-L" "/opt/rustwide/target/debug/build/bzip2-sys-81a7ca3c6c5c2e2d/out/lib" "-L" "/usr/lib/x86_64-linux-gnu" "-L" "/opt/rustwide/rustup-home/toolchains/1.75.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-Wl,-Bstatic" "/opt/rustwide/rustup-home/toolchains/1.75.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libtest-3df1bed8075ce1de.rlib" "/opt/rustwide/rustup-home/toolchains/1.75.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libgetopts-2076fd86b325cb5d.rlib" "/opt/rustwide/rustup-home/toolchains/1.75.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libunicode_width-caa7152ee70c190f.rlib" "/opt/rustwide/rustup-home/toolchains/1.75.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_std-04e6425e07f02a3c.rlib" "/opt/rustwide/target/debug/deps/libenv_logger-a3f24025e1736d7e.rlib" "/opt/rustwide/target/debug/deps/libregex-396924c56042db11.rlib" "/opt/rustwide/target/debug/deps/libutf8_ranges-807437691719d694.rlib" "/opt/rustwide/target/debug/deps/libregex_syntax-b5b47f3173344875.rlib" "/opt/rustwide/target/debug/deps/libthread_local-fe1465470f488a0e.rlib" "/opt/rustwide/target/debug/deps/libthread_id-105466af136dd0c2.rlib" "/opt/rustwide/target/debug/deps/libaho_corasick-2539c4133474a5f3.rlib" "/opt/rustwide/target/debug/deps/libmemchr-bea301d87ef969fb.rlib" "/opt/rustwide/target/debug/deps/libcached-ace8fa5f03e8250e.rlib" "/opt/rustwide/target/debug/deps/libregex-3cce5e2b06fe87ad.rlib" "/opt/rustwide/target/debug/deps/libutf8_ranges-4ad094584ea8f45b.rlib" "/opt/rustwide/target/debug/deps/libregex_syntax-2696e54958e00d15.rlib" "/opt/rustwide/target/debug/deps/libucd_util-a038f79afc473100.rlib" "/opt/rustwide/target/debug/deps/libthread_local-a8c51dbf257b3fb9.rlib" "/opt/rustwide/target/debug/deps/libaho_corasick-f031fd6ed75ff267.rlib" "/opt/rustwide/target/debug/deps/librusty_machine-f9b1a2e09d917087.rlib" "/opt/rustwide/target/debug/deps/librulinalg-171516b34a6970af.rlib" "/opt/rustwide/target/debug/deps/libnum-d204683d5fce63b7.rlib" "/opt/rustwide/target/debug/deps/libnum_iter-c092a0819201fe05.rlib" "/opt/rustwide/target/debug/deps/libndarray-0b314d8cc3ce3588.rlib" "/opt/rustwide/target/debug/deps/libnum_complex-ef93cc033d499808.rlib" "/opt/rustwide/target/debug/deps/libnum_traits-b2f5918e9c1f5f00.rlib" "/opt/rustwide/target/debug/deps/libitertools-0655c28f7b0670a5.rlib" "/opt/rustwide/target/debug/deps/libapprox-2f657c5836d9abb7.rlib" "/opt/rustwide/target/debug/deps/librgsl-d683a68d984627f3.rlib" "/opt/rustwide/target/debug/deps/libc_vec-8b1ea8f4a33ede12.rlib" "/opt/rustwide/target/debug/deps/liblog-efa70ab06cac8285.rlib" "/opt/rustwide/target/debug/deps/liblog-e491f2c1d0b13538.rlib" "/opt/rustwide/target/debug/deps/librust_htslib-1f91a7392d4a0c77.rlib" "/opt/rustwide/target/debug/deps/liblzma_sys-08dcfa835a9b6724.rlib" "/opt/rustwide/target/debug/deps/libbzip2_sys-8b55305e5ab824d5.rlib" "/opt/rustwide/target/debug/deps/liblibz_sys-e13325686cfee2d7.rlib" "/opt/rustwide/target/debug/deps/liblinear_map-f6a7658c0993cd3a.rlib" "/opt/rustwide/target/debug/deps/liburl-5eb6abafa299dfb6.rlib" "/opt/rustwide/target/debug/deps/libpercent_encoding-139f6dad4c5bd392.rlib" "/opt/rustwide/target/debug/deps/libidna-1c39b7924ead49eb.rlib" "/opt/rustwide/target/debug/deps/libunicode_normalization-e1c1be84a555e587.rlib" "/opt/rustwide/target/debug/deps/libtinyvec-cf6c9f6b792a5507.rlib" "/opt/rustwide/target/debug/deps/libtinyvec_macros-b1cb7f53f58c9f87.rlib" "/opt/rustwide/target/debug/deps/libunicode_bidi-9e36a2b0928c1d80.rlib" "/opt/rustwide/target/debug/deps/libmatches-5e4cb3d4c3233fbd.rlib" "/opt/rustwide/target/debug/deps/liblazy_static-f3c2a39b584a8c58.rlib" "/opt/rustwide/target/debug/deps/libitertools-496c171baf554087.rlib" "/opt/rustwide/target/debug/deps/libieee754-3128af622bbaa863.rlib" "/opt/rustwide/target/debug/deps/libbitflags-ed76973d211f7321.rlib" "/opt/rustwide/target/debug/deps/libbio-eec83d6b700007f5.rlib" "/opt/rustwide/target/debug/deps/libfxhash-8e18d85b435e0508.rlib" "/opt/rustwide/target/debug/deps/libbyteorder-e9468b374a0c0c11.rlib" "/opt/rustwide/target/debug/deps/libvec_map-faefe0e9db3757d4.rlib" "/opt/rustwide/target/debug/deps/libstatrs-15becdd2f63613d6.rlib" "/opt/rustwide/target/debug/deps/librand-dc0f272f54d0bf9a.rlib" "/opt/rustwide/target/debug/deps/librand-8fe927880221dbec.rlib" "/opt/rustwide/target/debug/deps/liblibc-05dfc01c3726be84.rlib" "/opt/rustwide/target/debug/deps/libfnv-18bf5144d055e772.rlib" "/opt/rustwide/target/debug/deps/libbv-8b30b8ec1099aa29.rlib" "/opt/rustwide/target/debug/deps/libquick_error-e0931f21b2f0d487.rlib" "/opt/rustwide/target/debug/deps/libordered_float-b2b654dbe62e616e.rlib" "/opt/rustwide/target/debug/deps/libnum_integer-166e5fd07b88eba2.rlib" "/opt/rustwide/target/debug/deps/libnewtype_derive-0c29ace75ac15437.rlib" "/opt/rustwide/target/debug/deps/libndarray-3e6005444fc85f4a.rlib" "/opt/rustwide/target/debug/deps/libnum_complex-dd81006aa8ca1c4c.rlib" "/opt/rustwide/target/debug/deps/libmatrixmultiply-de1795908bc81b5e.rlib" "/opt/rustwide/target/debug/deps/librawpointer-fe37435ebd1878b7.rlib" "/opt/rustwide/target/debug/deps/libmultimap-01531f3c5e1da707.rlib" "/opt/rustwide/target/debug/deps/libitertools_num-f4c34baa4d5f3f97.rlib" "/opt/rustwide/target/debug/deps/libitertools-9328d5bf6f5f48fc.rlib" "/opt/rustwide/target/debug/deps/libeither-02329136bf214899.rlib" "/opt/rustwide/target/debug/deps/libcustom_derive-50430035dd1c239d.rlib" "/opt/rustwide/target/debug/deps/libcsv-eb1770bb3c419564.rlib" "/opt/rustwide/target/debug/deps/libryu-5f304b1b6393964f.rlib" "/opt/rustwide/target/debug/deps/libitoa-5f181af53b99b92c.rlib" "/opt/rustwide/target/debug/deps/libcsv_core-b4b80b32c3f50adb.rlib" "/opt/rustwide/target/debug/deps/libserde-babc42bd46d1808c.rlib" "/opt/rustwide/target/debug/deps/libbytecount-4e079fb78dca97ca.rlib" "/opt/rustwide/target/debug/deps/libbit_set-1c30cf26081adff1.rlib" "/opt/rustwide/target/debug/deps/libbit_vec-f0ba0f35100062e1.rlib" "/opt/rustwide/target/debug/deps/libapprox-1a93bc5041e6fa56.rlib" "/opt/rustwide/target/debug/deps/libnum_traits-dcf66cbda2c5463d.rlib" "/opt/rustwide/target/debug/deps/libbio_types-322c241fd8d80ca6.rlib" "/opt/rustwide/target/debug/deps/libthiserror-37863dc5ca039736.rlib" "/opt/rustwide/target/debug/deps/libregex-3fdc9a8f6eaf81cf.rlib" "/opt/rustwide/target/debug/deps/libregex_automata-7e239e4b359aa58c.rlib" "/opt/rustwide/target/debug/deps/libaho_corasick-c461b2416345444e.rlib" "/opt/rustwide/target/debug/deps/libmemchr-94009dd89ebb9d8d.rlib" "/opt/rustwide/target/debug/deps/libregex_syntax-e4dd3c3a3cb10e1d.rlib" "/opt/rustwide/target/debug/deps/liblazy_static-591486ebcb9a7ead.rlib" "/opt/rustwide/rustup-home/toolchains/1.75.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libstd-90f6ddbf82de36ec.rlib" "/opt/rustwide/rustup-home/toolchains/1.75.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libpanic_unwind-480c41e9d4e1f677.rlib" "/opt/rustwide/rustup-home/toolchains/1.75.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libobject-db744c0ca03eed1d.rlib" "/opt/rustwide/rustup-home/toolchains/1.75.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libmemchr-8ba652dc7d4b285a.rlib" "/opt/rustwide/rustup-home/toolchains/1.75.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libaddr2line-d5f4520a9ebc0d58.rlib" "/opt/rustwide/rustup-home/toolchains/1.75.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libgimli-4ad84de58f0cb463.rlib" "/opt/rustwide/rustup-home/toolchains/1.75.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_demangle-0d10aae2e0f38735.rlib" "/opt/rustwide/rustup-home/toolchains/1.75.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libstd_detect-0c17cff739e6745b.rlib" "/opt/rustwide/rustup-home/toolchains/1.75.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libhashbrown-b29e17139dde1aa8.rlib" "/opt/rustwide/rustup-home/toolchains/1.75.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_alloc-1f975299829cc7bd.rlib" "/opt/rustwide/rustup-home/toolchains/1.75.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libminiz_oxide-86bae3bc3079f89b.rlib" "/opt/rustwide/rustup-home/toolchains/1.75.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libadler-321b82c30dffdf5f.rlib" "/opt/rustwide/rustup-home/toolchains/1.75.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libunwind-3dd8a6810a0bdfef.rlib" "/opt/rustwide/rustup-home/toolchains/1.75.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcfg_if-eb39a61c0c879984.rlib" "/opt/rustwide/rustup-home/toolchains/1.75.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/liblibc-aa769569f91c3548.rlib" "/opt/rustwide/rustup-home/toolchains/1.75.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/liballoc-510a192a50a983ed.rlib" "/opt/rustwide/rustup-home/toolchains/1.75.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_core-0577018320f99037.rlib" "/opt/rustwide/rustup-home/toolchains/1.75.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcore-193cf992125ccd4c.rlib" "/opt/rustwide/rustup-home/toolchains/1.75.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcompiler_builtins-8e138eaf26ebb4a8.rlib" "-Wl,-Bdynamic" "-llzma" "-lz" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/rustup-home/toolchains/1.75.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/opt/rustwide/target/debug/deps/libprosic-80c005c39a79e030" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs"
[INFO] [stdout]   = note: /usr/bin/ld: /opt/rustwide/target/debug/deps/librgsl-d683a68d984627f3.rlib(rgsl-d683a68d984627f3.rgsl.eae20a1600b26fb0-cgu.2.rcgu.o): in function `rgsl::error::erfc':
[INFO] [stdout]           /opt/rustwide/cargo-home/registry/src/index.crates.io-6f17d22bba15001f/GSL-1.1.0/src/error.rs:28: undefined reference to `gsl_sf_erfc'
[INFO] [stdout]           /usr/bin/ld: /opt/rustwide/target/debug/deps/librgsl-d683a68d984627f3.rlib(rgsl-d683a68d984627f3.rgsl.eae20a1600b26fb0-cgu.7.rcgu.o): in function `rgsl::randist::gaussian::gaussian_pdf':
[INFO] [stdout]           /opt/rustwide/cargo-home/registry/src/index.crates.io-6f17d22bba15001f/GSL-1.1.0/src/randist/gaussian.rs:20: undefined reference to `gsl_ran_gaussian_pdf'
[INFO] [stdout]           /usr/bin/ld: /opt/rustwide/target/debug/deps/librgsl-d683a68d984627f3.rlib(rgsl-d683a68d984627f3.rgsl.eae20a1600b26fb0-cgu.7.rcgu.o): in function `rgsl::randist::gaussian::ugaussian_P':
[INFO] [stdout]           /opt/rustwide/cargo-home/registry/src/index.crates.io-6f17d22bba15001f/GSL-1.1.0/src/randist/gaussian.rs:73: undefined reference to `gsl_cdf_ugaussian_P'
[INFO] [stdout]           collect2: error: ld returned 1 exit status
[INFO] [stdout]           
[INFO] [stdout]   = note: some `extern` functions couldn't be found; some native libraries may need to be installed or have their path specified
[INFO] [stdout]   = note: use the `-l` flag to specify native libraries to link
[INFO] [stdout]   = note: use the `cargo:rustc-link-lib` directive to specify the native libraries to link with Cargo (see https://doc.rust-lang.org/cargo/reference/build-scripts.html#cargorustc-link-libkindname)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to previous error; 34 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `libprosic` (lib test) due to 2 previous errors; 34 warnings emitted
[INFO] running `Command { std: "docker" "inspect" "f8749749577f0428e6b057a449a56c8f63d9b1726d6639f0e2f005606a8cd4f0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f8749749577f0428e6b057a449a56c8f63d9b1726d6639f0e2f005606a8cd4f0", kill_on_drop: false }`
[INFO] [stdout] f8749749577f0428e6b057a449a56c8f63d9b1726d6639f0e2f005606a8cd4f0
[INFO] testing libprosic-0.7.3 against beta-2023-12-22 for beta-1.76-1
[INFO] extracting crate libprosic 0.7.3 into /workspace/builds/worker-0-tc2/source
[INFO] validating manifest of crates.io crate libprosic 0.7.3 on toolchain beta-2023-12-22
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2023-12-22" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate libprosic 0.7.3
[INFO] finished tweaking crates.io crate libprosic 0.7.3
[INFO] tweaked toml for crates.io crate libprosic 0.7.3 written to /workspace/builds/worker-0-tc2/source/Cargo.toml
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2023-12-22" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2023-12-22" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2023-12-22" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] b6f1aa8a1245edb56e08b2ecaa23c64bd91413fb0a228a9729730bc70afa7e9f
[INFO] running `Command { std: "docker" "start" "-a" "b6f1aa8a1245edb56e08b2ecaa23c64bd91413fb0a228a9729730bc70afa7e9f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "b6f1aa8a1245edb56e08b2ecaa23c64bd91413fb0a228a9729730bc70afa7e9f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b6f1aa8a1245edb56e08b2ecaa23c64bd91413fb0a228a9729730bc70afa7e9f", kill_on_drop: false }`
[INFO] [stdout] b6f1aa8a1245edb56e08b2ecaa23c64bd91413fb0a228a9729730bc70afa7e9f
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2023-12-22" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 867157465f915c1f11c0aa2ac413546281b681eb1d55adbc3d859965b580810f
[INFO] running `Command { std: "docker" "start" "-a" "867157465f915c1f11c0aa2ac413546281b681eb1d55adbc3d859965b580810f", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.151
[INFO] [stderr]    Compiling memchr v2.7.1
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling glob v0.2.11
[INFO] [stderr]    Compiling matrixmultiply v0.1.15
[INFO] [stderr]    Compiling rustversion v1.0.14
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling rawpointer v0.1.0
[INFO] [stderr]    Compiling num-integer v0.1.45
[INFO] [stderr]    Compiling unicode-width v0.1.11
[INFO] [stderr]    Compiling semver v0.1.20
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[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:62:20
[INFO] [stdout]    |
[INFO] [stdout] 62 |     let variants = try!(utils::collect_variants(
[INFO] [stdout]    |                    ^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:70:21
[INFO] [stdout]    |
[INFO] [stdout] 70 |     let chrom_seq = try!(reference_buffer.seq(&chrom));
[INFO] [stdout]    |                     ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:75:18
[INFO] [stdout]    |
[INFO] [stdout] 75 |             Some(try!(joint_model.pileup(
[INFO] [stdout]    |                  ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/call/pairwise.rs:159:26
[INFO] [stdout]     |
[INFO] [stdout] 159 |         let mut writer = try!(csv::WriterBuilder::new()
[INFO] [stdout]     |                          ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/model/sample.rs:76:17
[INFO] [stdout]    |
[INFO] [stdout] 76 |                 try!(self.reader.fetch(tid, window_start, end));
[INFO] [stdout]    |                 ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred
[INFO] [stdout]    --> src/model/evidence/reads.rs:335:1
[INFO] [stdout]     |
[INFO] [stdout] 335 | / lazy_static! {
[INFO] [stdout] 336 | |     static ref PROB_CONFUSION: LogProb = LogProb::from(Prob(0.3333));
[INFO] [stdout] 337 | | }
[INFO] [stdout]     | |_^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this warning originates in the macro `__lazy_static_create` which comes from the expansion of the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred
[INFO] [stdout]   --> src/model/priors/single_cell_bulk.rs:26:1
[INFO] [stdout]    |
[INFO] [stdout] 26 | / cached! {
[INFO] [stdout] 27 | |     AMPLIF_CACHE: UnboundCache<(AlleleFreq, usize, usize), LogProb> = UnboundCache::new();
[INFO] [stdout] 28 | |     // Lodato et al. 2015, Science, Supplementary Information, pages 8f and Fig. S5 (A, C, E)
[INFO] [stdout] 29 | |     // TODO: allow for non-default Lodato model parameters, e.g. learned from the data at hand
[INFO] [stdout] ...  |
[INFO] [stdout] 96 | |     }
[INFO] [stdout] 97 | | }
[INFO] [stdout]    | |_^
[INFO] [stdout]    |
[INFO] [stdout]    = note: this warning originates in the macro `__lazy_static_create` which comes from the expansion of the macro `cached` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/call/pairwise.rs:55:62
[INFO] [stdout]    |
[INFO] [stdout] 55 | ) -> Result<Vec<Option<model::PairPileup<'a, A, B, P>>>, Box<Error>>
[INFO] [stdout]    |                                                              ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout]    = note: `#[warn(bare_trait_objects)]` on by default
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 55 | ) -> Result<Vec<Option<model::PairPileup<'a, A, B, P>>>, Box<dyn Error>>
[INFO] [stdout]    |                                                              +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/call/pairwise.rs:116:21
[INFO] [stdout]     |
[INFO] [stdout] 116 | ) -> Result<(), Box<Error>>
[INFO] [stdout]     |                     ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 116 | ) -> Result<(), Box<dyn Error>>
[INFO] [stdout]     |                     +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/estimation/alignment_properties.rs:40:68
[INFO] [stdout]    |
[INFO] [stdout] 40 |     pub fn estimate<R: bam::Read>(bam: &mut R) -> Result<Self, Box<Error>> {
[INFO] [stdout]    |                                                                    ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 40 |     pub fn estimate<R: bam::Read>(bam: &mut R) -> Result<Self, Box<dyn Error>> {
[INFO] [stdout]    |                                                                    +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/estimation/alignment_properties.rs:142:33
[INFO] [stdout]     |
[INFO] [stdout] 142 |     ) -> Result<InsertSize, Box<Error>> {
[INFO] [stdout]     |                                 ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 142 |     ) -> Result<InsertSize, Box<dyn Error>> {
[INFO] [stdout]     |                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/estimation/fdr/ev.rs:35:21
[INFO] [stdout]    |
[INFO] [stdout] 35 | ) -> Result<(), Box<Error>>
[INFO] [stdout]    |                     ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 35 | ) -> Result<(), Box<dyn Error>>
[INFO] [stdout]    |                     +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/mod.rs:275:41
[INFO] [stdout]     |
[INFO] [stdout] 275 |     ) -> Result<SinglePileup<A, P>, Box<Error>> {
[INFO] [stdout]     |                                         ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 275 |     ) -> Result<SinglePileup<A, P>, Box<dyn Error>> {
[INFO] [stdout]     |                                         +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/mod.rs:416:42
[INFO] [stdout]     |
[INFO] [stdout] 416 |     ) -> Result<PairPileup<A, B, P>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 416 |     ) -> Result<PairPileup<A, B, P>, Box<dyn Error>> {
[INFO] [stdout]     |                                          +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/fragments.rs:52:89
[INFO] [stdout]    |
[INFO] [stdout] 52 | pub fn estimate_insert_size(left: &bam::Record, right: &bam::Record) -> Result<u32, Box<Error>> {
[INFO] [stdout]    |                                                                                         ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 52 | pub fn estimate_insert_size(left: &bam::Record, right: &bam::Record) -> Result<u32, Box<dyn Error>> {
[INFO] [stdout]    |                                                                                         +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/fragments.rs:120:41
[INFO] [stdout]     |
[INFO] [stdout] 120 |     ) -> Result<(LogProb, LogProb), Box<Error>> {
[INFO] [stdout]     |                                         ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 120 |     ) -> Result<(LogProb, LogProb), Box<dyn Error>> {
[INFO] [stdout]     |                                         +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/reads.rs:30:49
[INFO] [stdout]    |
[INFO] [stdout] 30 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>>;
[INFO] [stdout]    |                                                 ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 30 |     ) -> Result<Option<(LogProb, LogProb)>, Box<dyn Error>>;
[INFO] [stdout]    |                                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/reads.rs:56:49
[INFO] [stdout]    |
[INFO] [stdout] 56 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]    |                                                 ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 56 |     ) -> Result<Option<(LogProb, LogProb)>, Box<dyn Error>> {
[INFO] [stdout]    |                                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/reads.rs:101:49
[INFO] [stdout]     |
[INFO] [stdout] 101 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]     |                                                 ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 101 |     ) -> Result<Option<(LogProb, LogProb)>, Box<dyn Error>> {
[INFO] [stdout]     |                                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/reads.rs:169:49
[INFO] [stdout]     |
[INFO] [stdout] 169 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]     |                                                 ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 169 |     ) -> Result<Option<(LogProb, LogProb)>, Box<dyn Error>> {
[INFO] [stdout]     |                                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/sample.rs:68:82
[INFO] [stdout]    |
[INFO] [stdout] 68 |     pub fn fill(&mut self, chrom: &[u8], start: u32, end: u32) -> Result<(), Box<Error>> {
[INFO] [stdout]    |                                                                                  ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 68 |     pub fn fill(&mut self, chrom: &[u8], start: u32, end: u32) -> Result<(), Box<dyn Error>> {
[INFO] [stdout]    |                                                                                  +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:220:39
[INFO] [stdout]     |
[INFO] [stdout] 220 |     ) -> Result<Vec<Observation>, Box<Error>> {
[INFO] [stdout]     |                                       ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 220 |     ) -> Result<Vec<Observation>, Box<dyn Error>> {
[INFO] [stdout]     |                                       +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:362:42
[INFO] [stdout]     |
[INFO] [stdout] 362 |     ) -> Result<Option<Observation>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 362 |     ) -> Result<Option<Observation>, Box<dyn Error>> {
[INFO] [stdout]     |                                          +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:409:42
[INFO] [stdout]     |
[INFO] [stdout] 409 |     ) -> Result<Option<Observation>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 409 |     ) -> Result<Option<Observation>, Box<dyn Error>> {
[INFO] [stdout]     |                                          +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/utils.rs:27:46
[INFO] [stdout]    |
[INFO] [stdout] 27 | ) -> Result<Vec<Option<model::Variant>>, Box<Error>> {
[INFO] [stdout]    |                                              ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 27 | ) -> Result<Vec<Option<model::Variant>>, Box<dyn Error>> {
[INFO] [stdout]    |                                              +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:232:39
[INFO] [stdout]     |
[INFO] [stdout] 232 | ) -> Result<Vec<Option<LogProb>>, Box<Error>> {
[INFO] [stdout]     |                                       ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 232 | ) -> Result<Vec<Option<LogProb>>, Box<dyn Error>> {
[INFO] [stdout]     |                                       +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:276:35
[INFO] [stdout]     |
[INFO] [stdout] 276 | ) -> Result<Vec<NotNan<f64>>, Box<Error>> {
[INFO] [stdout]     |                                   ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 276 | ) -> Result<Vec<NotNan<f64>>, Box<dyn Error>> {
[INFO] [stdout]     |                                   +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:317:21
[INFO] [stdout]     |
[INFO] [stdout] 317 | ) -> Result<(), Box<Error>> {
[INFO] [stdout]     |                     ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 317 | ) -> Result<(), Box<dyn Error>> {
[INFO] [stdout]     |                     +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:204:62
[INFO] [stdout]     |
[INFO] [stdout] 204 |     pub fn seq(&mut self, chrom: &[u8]) -> Result<&[u8], Box<Error>> {
[INFO] [stdout]     |                                                              ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 204 |     pub fn seq(&mut self, chrom: &[u8]) -> Result<&[u8], Box<dyn Error>> {
[INFO] [stdout]     |                                                              +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:367:30
[INFO] [stdout]     |
[INFO] [stdout] 367 |     ) -> Result<Overlap, Box<Error>> {
[INFO] [stdout]     |                              ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 367 |     ) -> Result<Overlap, Box<dyn Error>> {
[INFO] [stdout]     |                              +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/fragments.rs:56:68
[INFO] [stdout]    |
[INFO] [stdout] 56 |     let aln = |rec: &bam::Record, cigar| -> Result<(u32, u32), Box<Error>> {
[INFO] [stdout]    |                                                                    ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 56 |     let aln = |rec: &bam::Record, cigar| -> Result<(u32, u32), Box<dyn Error>> {
[INFO] [stdout]    |                                                                    +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:363:34
[INFO] [stdout]     |
[INFO] [stdout] 363 |         let mut evidence: RefMut<evidence::reads::AbstractReadEvidence> = match variant {
[INFO] [stdout]     |                                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 363 |         let mut evidence: RefMut<dyn evidence::reads::AbstractReadEvidence> = match variant {
[INFO] [stdout]     |                                  +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:412:44
[INFO] [stdout]     |
[INFO] [stdout] 412 |          -> Result<(LogProb, LogProb), Box<Error>> {
[INFO] [stdout]     |                                            ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 412 |          -> Result<(LogProb, LogProb), Box<dyn Error>> {
[INFO] [stdout]     |                                            +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 33 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 30.44s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nom v3.2.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
[INFO] running `Command { std: "docker" "inspect" "867157465f915c1f11c0aa2ac413546281b681eb1d55adbc3d859965b580810f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "867157465f915c1f11c0aa2ac413546281b681eb1d55adbc3d859965b580810f", kill_on_drop: false }`
[INFO] [stdout] 867157465f915c1f11c0aa2ac413546281b681eb1d55adbc3d859965b580810f
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2023-12-22" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] ee4cee9716eecf5c9aa3b3b826f944819a479b39f2bfca9c90ec981bc3506c06
[INFO] running `Command { std: "docker" "start" "-a" "ee4cee9716eecf5c9aa3b3b826f944819a479b39f2bfca9c90ec981bc3506c06", kill_on_drop: false }`
[INFO] [stderr]    Compiling winapi-build v0.1.1
[INFO] [stderr]    Compiling winapi v0.2.8
[INFO] [stderr]    Compiling version_check v0.1.5
[INFO] [stderr]    Compiling miniz-sys v0.1.12
[INFO] [stderr]    Compiling memchr v0.1.11
[INFO] [stderr]    Compiling safemem v0.3.3
[INFO] [stderr]    Compiling utf8-ranges v0.1.3
[INFO] [stderr]    Compiling regex-syntax v0.3.9
[INFO] [stderr]    Compiling mime v0.2.6
[INFO] [stderr]    Compiling time v0.1.45
[INFO] [stderr]    Compiling num_cpus v1.16.0
[INFO] [stderr]    Compiling typeable v0.1.2
[INFO] [stderr]    Compiling traitobject v0.1.0
[INFO] [stderr]    Compiling language-tags v0.2.2
[INFO] [stderr]    Compiling fern v0.4.4
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:62:20
[INFO] [stdout]    |
[INFO] [stdout] 62 |     let variants = try!(utils::collect_variants(
[INFO] [stdout]    |                    ^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:70:21
[INFO] [stdout]    |
[INFO] [stdout] 70 |     let chrom_seq = try!(reference_buffer.seq(&chrom));
[INFO] [stdout]    |                     ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:75:18
[INFO] [stdout]    |
[INFO] [stdout] 75 |             Some(try!(joint_model.pileup(
[INFO] [stdout]    |                  ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/call/pairwise.rs:159:26
[INFO] [stdout]     |
[INFO] [stdout] 159 |         let mut writer = try!(csv::WriterBuilder::new()
[INFO] [stdout]     |                          ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/model/sample.rs:76:17
[INFO] [stdout]    |
[INFO] [stdout] 76 |                 try!(self.reader.fetch(tid, window_start, end));
[INFO] [stdout]    |                 ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred
[INFO] [stdout]    --> src/model/evidence/reads.rs:335:1
[INFO] [stdout]     |
[INFO] [stdout] 335 | / lazy_static! {
[INFO] [stdout] 336 | |     static ref PROB_CONFUSION: LogProb = LogProb::from(Prob(0.3333));
[INFO] [stdout] 337 | | }
[INFO] [stdout]     | |_^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this warning originates in the macro `__lazy_static_create` which comes from the expansion of the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred
[INFO] [stdout]   --> src/model/priors/single_cell_bulk.rs:26:1
[INFO] [stdout]    |
[INFO] [stdout] 26 | / cached! {
[INFO] [stdout] 27 | |     AMPLIF_CACHE: UnboundCache<(AlleleFreq, usize, usize), LogProb> = UnboundCache::new();
[INFO] [stdout] 28 | |     // Lodato et al. 2015, Science, Supplementary Information, pages 8f and Fig. S5 (A, C, E)
[INFO] [stdout] 29 | |     // TODO: allow for non-default Lodato model parameters, e.g. learned from the data at hand
[INFO] [stdout] ...  |
[INFO] [stdout] 96 | |     }
[INFO] [stdout] 97 | | }
[INFO] [stdout]    | |_^
[INFO] [stdout]    |
[INFO] [stdout]    = note: this warning originates in the macro `__lazy_static_create` which comes from the expansion of the macro `cached` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/call/pairwise.rs:55:62
[INFO] [stdout]    |
[INFO] [stdout] 55 | ) -> Result<Vec<Option<model::PairPileup<'a, A, B, P>>>, Box<Error>>
[INFO] [stdout]    |                                                              ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout]    = note: `#[warn(bare_trait_objects)]` on by default
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 55 | ) -> Result<Vec<Option<model::PairPileup<'a, A, B, P>>>, Box<dyn Error>>
[INFO] [stdout]    |                                                              +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/call/pairwise.rs:116:21
[INFO] [stdout]     |
[INFO] [stdout] 116 | ) -> Result<(), Box<Error>>
[INFO] [stdout]     |                     ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 116 | ) -> Result<(), Box<dyn Error>>
[INFO] [stdout]     |                     +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/estimation/alignment_properties.rs:40:68
[INFO] [stdout]    |
[INFO] [stdout] 40 |     pub fn estimate<R: bam::Read>(bam: &mut R) -> Result<Self, Box<Error>> {
[INFO] [stdout]    |                                                                    ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 40 |     pub fn estimate<R: bam::Read>(bam: &mut R) -> Result<Self, Box<dyn Error>> {
[INFO] [stdout]    |                                                                    +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/estimation/alignment_properties.rs:142:33
[INFO] [stdout]     |
[INFO] [stdout] 142 |     ) -> Result<InsertSize, Box<Error>> {
[INFO] [stdout]     |                                 ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 142 |     ) -> Result<InsertSize, Box<dyn Error>> {
[INFO] [stdout]     |                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/estimation/fdr/ev.rs:35:21
[INFO] [stdout]    |
[INFO] [stdout] 35 | ) -> Result<(), Box<Error>>
[INFO] [stdout]    |                     ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 35 | ) -> Result<(), Box<dyn Error>>
[INFO] [stdout]    |                     +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/mod.rs:275:41
[INFO] [stdout]     |
[INFO] [stdout] 275 |     ) -> Result<SinglePileup<A, P>, Box<Error>> {
[INFO] [stdout]     |                                         ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 275 |     ) -> Result<SinglePileup<A, P>, Box<dyn Error>> {
[INFO] [stdout]     |                                         +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/mod.rs:416:42
[INFO] [stdout]     |
[INFO] [stdout] 416 |     ) -> Result<PairPileup<A, B, P>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 416 |     ) -> Result<PairPileup<A, B, P>, Box<dyn Error>> {
[INFO] [stdout]     |                                          +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/fragments.rs:52:89
[INFO] [stdout]    |
[INFO] [stdout] 52 | pub fn estimate_insert_size(left: &bam::Record, right: &bam::Record) -> Result<u32, Box<Error>> {
[INFO] [stdout]    |                                                                                         ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 52 | pub fn estimate_insert_size(left: &bam::Record, right: &bam::Record) -> Result<u32, Box<dyn Error>> {
[INFO] [stdout]    |                                                                                         +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/fragments.rs:120:41
[INFO] [stdout]     |
[INFO] [stdout] 120 |     ) -> Result<(LogProb, LogProb), Box<Error>> {
[INFO] [stdout]     |                                         ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 120 |     ) -> Result<(LogProb, LogProb), Box<dyn Error>> {
[INFO] [stdout]     |                                         +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/reads.rs:30:49
[INFO] [stdout]    |
[INFO] [stdout] 30 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>>;
[INFO] [stdout]    |                                                 ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 30 |     ) -> Result<Option<(LogProb, LogProb)>, Box<dyn Error>>;
[INFO] [stdout]    |                                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/reads.rs:56:49
[INFO] [stdout]    |
[INFO] [stdout] 56 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]    |                                                 ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 56 |     ) -> Result<Option<(LogProb, LogProb)>, Box<dyn Error>> {
[INFO] [stdout]    |                                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/reads.rs:101:49
[INFO] [stdout]     |
[INFO] [stdout] 101 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]     |                                                 ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 101 |     ) -> Result<Option<(LogProb, LogProb)>, Box<dyn Error>> {
[INFO] [stdout]     |                                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/reads.rs:169:49
[INFO] [stdout]     |
[INFO] [stdout] 169 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]     |                                                 ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 169 |     ) -> Result<Option<(LogProb, LogProb)>, Box<dyn Error>> {
[INFO] [stdout]     |                                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/sample.rs:68:82
[INFO] [stdout]    |
[INFO] [stdout] 68 |     pub fn fill(&mut self, chrom: &[u8], start: u32, end: u32) -> Result<(), Box<Error>> {
[INFO] [stdout]    |                                                                                  ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 68 |     pub fn fill(&mut self, chrom: &[u8], start: u32, end: u32) -> Result<(), Box<dyn Error>> {
[INFO] [stdout]    |                                                                                  +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:220:39
[INFO] [stdout]     |
[INFO] [stdout] 220 |     ) -> Result<Vec<Observation>, Box<Error>> {
[INFO] [stdout]     |                                       ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 220 |     ) -> Result<Vec<Observation>, Box<dyn Error>> {
[INFO] [stdout]     |                                       +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:362:42
[INFO] [stdout]     |
[INFO] [stdout] 362 |     ) -> Result<Option<Observation>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 362 |     ) -> Result<Option<Observation>, Box<dyn Error>> {
[INFO] [stdout]     |                                          +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:409:42
[INFO] [stdout]     |
[INFO] [stdout] 409 |     ) -> Result<Option<Observation>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 409 |     ) -> Result<Option<Observation>, Box<dyn Error>> {
[INFO] [stdout]     |                                          +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/utils.rs:27:46
[INFO] [stdout]    |
[INFO] [stdout] 27 | ) -> Result<Vec<Option<model::Variant>>, Box<Error>> {
[INFO] [stdout]    |                                              ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 27 | ) -> Result<Vec<Option<model::Variant>>, Box<dyn Error>> {
[INFO] [stdout]    |                                              +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:232:39
[INFO] [stdout]     |
[INFO] [stdout] 232 | ) -> Result<Vec<Option<LogProb>>, Box<Error>> {
[INFO] [stdout]     |                                       ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 232 | ) -> Result<Vec<Option<LogProb>>, Box<dyn Error>> {
[INFO] [stdout]     |                                       +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:276:35
[INFO] [stdout]     |
[INFO] [stdout] 276 | ) -> Result<Vec<NotNan<f64>>, Box<Error>> {
[INFO] [stdout]     |                                   ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 276 | ) -> Result<Vec<NotNan<f64>>, Box<dyn Error>> {
[INFO] [stdout]     |                                   +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:317:21
[INFO] [stdout]     |
[INFO] [stdout] 317 | ) -> Result<(), Box<Error>> {
[INFO] [stdout]     |                     ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 317 | ) -> Result<(), Box<dyn Error>> {
[INFO] [stdout]     |                     +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:204:62
[INFO] [stdout]     |
[INFO] [stdout] 204 |     pub fn seq(&mut self, chrom: &[u8]) -> Result<&[u8], Box<Error>> {
[INFO] [stdout]     |                                                              ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 204 |     pub fn seq(&mut self, chrom: &[u8]) -> Result<&[u8], Box<dyn Error>> {
[INFO] [stdout]     |                                                              +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:367:30
[INFO] [stdout]     |
[INFO] [stdout] 367 |     ) -> Result<Overlap, Box<Error>> {
[INFO] [stdout]     |                              ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 367 |     ) -> Result<Overlap, Box<dyn Error>> {
[INFO] [stdout]     |                              +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/fragments.rs:56:68
[INFO] [stdout]    |
[INFO] [stdout] 56 |     let aln = |rec: &bam::Record, cigar| -> Result<(u32, u32), Box<Error>> {
[INFO] [stdout]    |                                                                    ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 56 |     let aln = |rec: &bam::Record, cigar| -> Result<(u32, u32), Box<dyn Error>> {
[INFO] [stdout]    |                                                                    +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:363:34
[INFO] [stdout]     |
[INFO] [stdout] 363 |         let mut evidence: RefMut<evidence::reads::AbstractReadEvidence> = match variant {
[INFO] [stdout]     |                                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 363 |         let mut evidence: RefMut<dyn evidence::reads::AbstractReadEvidence> = match variant {
[INFO] [stdout]     |                                  +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:412:44
[INFO] [stdout]     |
[INFO] [stdout] 412 |          -> Result<(LogProb, LogProb), Box<Error>> {
[INFO] [stdout]     |                                            ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 412 |          -> Result<(LogProb, LogProb), Box<dyn Error>> {
[INFO] [stdout]     |                                            +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 33 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]    Compiling base64 v0.9.3
[INFO] [stderr]    Compiling aho-corasick v0.5.3
[INFO] [stderr]    Compiling kernel32-sys v0.2.2
[INFO] [stderr]    Compiling unicase v1.4.2
[INFO] [stderr]    Compiling thread-id v2.0.0
[INFO] [stderr]    Compiling thread_local v0.2.7
[INFO] [stderr]    Compiling hyper v0.10.16
[INFO] [stderr]    Compiling regex v0.1.80
[INFO] [stderr]    Compiling flate2 v0.2.20
[INFO] [stderr]    Compiling env_logger v0.3.5
[INFO] [stderr]    Compiling libprosic v0.7.3 (/opt/rustwide/workdir)
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:62:20
[INFO] [stdout]    |
[INFO] [stdout] 62 |     let variants = try!(utils::collect_variants(
[INFO] [stdout]    |                    ^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:70:21
[INFO] [stdout]    |
[INFO] [stdout] 70 |     let chrom_seq = try!(reference_buffer.seq(&chrom));
[INFO] [stdout]    |                     ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:75:18
[INFO] [stdout]    |
[INFO] [stdout] 75 |             Some(try!(joint_model.pileup(
[INFO] [stdout]    |                  ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/call/pairwise.rs:159:26
[INFO] [stdout]     |
[INFO] [stdout] 159 |         let mut writer = try!(csv::WriterBuilder::new()
[INFO] [stdout]     |                          ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/model/sample.rs:76:17
[INFO] [stdout]    |
[INFO] [stdout] 76 |                 try!(self.reader.fetch(tid, window_start, end));
[INFO] [stdout]    |                 ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred
[INFO] [stdout]    --> src/model/evidence/reads.rs:335:1
[INFO] [stdout]     |
[INFO] [stdout] 335 | / lazy_static! {
[INFO] [stdout] 336 | |     static ref PROB_CONFUSION: LogProb = LogProb::from(Prob(0.3333));
[INFO] [stdout] 337 | | }
[INFO] [stdout]     | |_^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this warning originates in the macro `__lazy_static_create` which comes from the expansion of the macro `lazy_static` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred
[INFO] [stdout]   --> src/model/priors/single_cell_bulk.rs:26:1
[INFO] [stdout]    |
[INFO] [stdout] 26 | / cached! {
[INFO] [stdout] 27 | |     AMPLIF_CACHE: UnboundCache<(AlleleFreq, usize, usize), LogProb> = UnboundCache::new();
[INFO] [stdout] 28 | |     // Lodato et al. 2015, Science, Supplementary Information, pages 8f and Fig. S5 (A, C, E)
[INFO] [stdout] 29 | |     // TODO: allow for non-default Lodato model parameters, e.g. learned from the data at hand
[INFO] [stdout] ...  |
[INFO] [stdout] 96 | |     }
[INFO] [stdout] 97 | | }
[INFO] [stdout]    | |_^
[INFO] [stdout]    |
[INFO] [stdout]    = note: this warning originates in the macro `__lazy_static_create` which comes from the expansion of the macro `cached` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/call/pairwise.rs:55:62
[INFO] [stdout]    |
[INFO] [stdout] 55 | ) -> Result<Vec<Option<model::PairPileup<'a, A, B, P>>>, Box<Error>>
[INFO] [stdout]    |                                                              ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout]    = note: `#[warn(bare_trait_objects)]` on by default
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 55 | ) -> Result<Vec<Option<model::PairPileup<'a, A, B, P>>>, Box<dyn Error>>
[INFO] [stdout]    |                                                              +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/call/pairwise.rs:116:21
[INFO] [stdout]     |
[INFO] [stdout] 116 | ) -> Result<(), Box<Error>>
[INFO] [stdout]     |                     ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 116 | ) -> Result<(), Box<dyn Error>>
[INFO] [stdout]     |                     +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/estimation/alignment_properties.rs:40:68
[INFO] [stdout]    |
[INFO] [stdout] 40 |     pub fn estimate<R: bam::Read>(bam: &mut R) -> Result<Self, Box<Error>> {
[INFO] [stdout]    |                                                                    ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 40 |     pub fn estimate<R: bam::Read>(bam: &mut R) -> Result<Self, Box<dyn Error>> {
[INFO] [stdout]    |                                                                    +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/estimation/alignment_properties.rs:142:33
[INFO] [stdout]     |
[INFO] [stdout] 142 |     ) -> Result<InsertSize, Box<Error>> {
[INFO] [stdout]     |                                 ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 142 |     ) -> Result<InsertSize, Box<dyn Error>> {
[INFO] [stdout]     |                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/estimation/fdr/ev.rs:35:21
[INFO] [stdout]    |
[INFO] [stdout] 35 | ) -> Result<(), Box<Error>>
[INFO] [stdout]    |                     ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 35 | ) -> Result<(), Box<dyn Error>>
[INFO] [stdout]    |                     +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/mod.rs:275:41
[INFO] [stdout]     |
[INFO] [stdout] 275 |     ) -> Result<SinglePileup<A, P>, Box<Error>> {
[INFO] [stdout]     |                                         ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 275 |     ) -> Result<SinglePileup<A, P>, Box<dyn Error>> {
[INFO] [stdout]     |                                         +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/mod.rs:416:42
[INFO] [stdout]     |
[INFO] [stdout] 416 |     ) -> Result<PairPileup<A, B, P>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 416 |     ) -> Result<PairPileup<A, B, P>, Box<dyn Error>> {
[INFO] [stdout]     |                                          +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/fragments.rs:52:89
[INFO] [stdout]    |
[INFO] [stdout] 52 | pub fn estimate_insert_size(left: &bam::Record, right: &bam::Record) -> Result<u32, Box<Error>> {
[INFO] [stdout]    |                                                                                         ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 52 | pub fn estimate_insert_size(left: &bam::Record, right: &bam::Record) -> Result<u32, Box<dyn Error>> {
[INFO] [stdout]    |                                                                                         +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/fragments.rs:120:41
[INFO] [stdout]     |
[INFO] [stdout] 120 |     ) -> Result<(LogProb, LogProb), Box<Error>> {
[INFO] [stdout]     |                                         ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 120 |     ) -> Result<(LogProb, LogProb), Box<dyn Error>> {
[INFO] [stdout]     |                                         +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/reads.rs:30:49
[INFO] [stdout]    |
[INFO] [stdout] 30 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>>;
[INFO] [stdout]    |                                                 ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 30 |     ) -> Result<Option<(LogProb, LogProb)>, Box<dyn Error>>;
[INFO] [stdout]    |                                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/reads.rs:56:49
[INFO] [stdout]    |
[INFO] [stdout] 56 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]    |                                                 ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 56 |     ) -> Result<Option<(LogProb, LogProb)>, Box<dyn Error>> {
[INFO] [stdout]    |                                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/reads.rs:101:49
[INFO] [stdout]     |
[INFO] [stdout] 101 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]     |                                                 ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 101 |     ) -> Result<Option<(LogProb, LogProb)>, Box<dyn Error>> {
[INFO] [stdout]     |                                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/reads.rs:169:49
[INFO] [stdout]     |
[INFO] [stdout] 169 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]     |                                                 ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 169 |     ) -> Result<Option<(LogProb, LogProb)>, Box<dyn Error>> {
[INFO] [stdout]     |                                                 +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/sample.rs:68:82
[INFO] [stdout]    |
[INFO] [stdout] 68 |     pub fn fill(&mut self, chrom: &[u8], start: u32, end: u32) -> Result<(), Box<Error>> {
[INFO] [stdout]    |                                                                                  ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 68 |     pub fn fill(&mut self, chrom: &[u8], start: u32, end: u32) -> Result<(), Box<dyn Error>> {
[INFO] [stdout]    |                                                                                  +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:220:39
[INFO] [stdout]     |
[INFO] [stdout] 220 |     ) -> Result<Vec<Observation>, Box<Error>> {
[INFO] [stdout]     |                                       ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 220 |     ) -> Result<Vec<Observation>, Box<dyn Error>> {
[INFO] [stdout]     |                                       +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:362:42
[INFO] [stdout]     |
[INFO] [stdout] 362 |     ) -> Result<Option<Observation>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 362 |     ) -> Result<Option<Observation>, Box<dyn Error>> {
[INFO] [stdout]     |                                          +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:409:42
[INFO] [stdout]     |
[INFO] [stdout] 409 |     ) -> Result<Option<Observation>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 409 |     ) -> Result<Option<Observation>, Box<dyn Error>> {
[INFO] [stdout]     |                                          +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/utils.rs:27:46
[INFO] [stdout]    |
[INFO] [stdout] 27 | ) -> Result<Vec<Option<model::Variant>>, Box<Error>> {
[INFO] [stdout]    |                                              ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 27 | ) -> Result<Vec<Option<model::Variant>>, Box<dyn Error>> {
[INFO] [stdout]    |                                              +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:232:39
[INFO] [stdout]     |
[INFO] [stdout] 232 | ) -> Result<Vec<Option<LogProb>>, Box<Error>> {
[INFO] [stdout]     |                                       ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 232 | ) -> Result<Vec<Option<LogProb>>, Box<dyn Error>> {
[INFO] [stdout]     |                                       +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:276:35
[INFO] [stdout]     |
[INFO] [stdout] 276 | ) -> Result<Vec<NotNan<f64>>, Box<Error>> {
[INFO] [stdout]     |                                   ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 276 | ) -> Result<Vec<NotNan<f64>>, Box<dyn Error>> {
[INFO] [stdout]     |                                   +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:317:21
[INFO] [stdout]     |
[INFO] [stdout] 317 | ) -> Result<(), Box<Error>> {
[INFO] [stdout]     |                     ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 317 | ) -> Result<(), Box<dyn Error>> {
[INFO] [stdout]     |                     +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:204:62
[INFO] [stdout]     |
[INFO] [stdout] 204 |     pub fn seq(&mut self, chrom: &[u8]) -> Result<&[u8], Box<Error>> {
[INFO] [stdout]     |                                                              ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 204 |     pub fn seq(&mut self, chrom: &[u8]) -> Result<&[u8], Box<dyn Error>> {
[INFO] [stdout]     |                                                              +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:367:30
[INFO] [stdout]     |
[INFO] [stdout] 367 |     ) -> Result<Overlap, Box<Error>> {
[INFO] [stdout]     |                              ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 367 |     ) -> Result<Overlap, Box<dyn Error>> {
[INFO] [stdout]     |                              +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/fragments.rs:56:68
[INFO] [stdout]    |
[INFO] [stdout] 56 |     let aln = |rec: &bam::Record, cigar| -> Result<(u32, u32), Box<Error>> {
[INFO] [stdout]    |                                                                    ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 56 |     let aln = |rec: &bam::Record, cigar| -> Result<(u32, u32), Box<dyn Error>> {
[INFO] [stdout]    |                                                                    +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:363:34
[INFO] [stdout]     |
[INFO] [stdout] 363 |         let mut evidence: RefMut<evidence::reads::AbstractReadEvidence> = match variant {
[INFO] [stdout]     |                                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 363 |         let mut evidence: RefMut<dyn evidence::reads::AbstractReadEvidence> = match variant {
[INFO] [stdout]     |                                  +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:412:44
[INFO] [stdout]     |
[INFO] [stdout] 412 |          -> Result<(LogProb, LogProb), Box<Error>> {
[INFO] [stdout]     |                                            ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: use `dyn`
[INFO] [stdout]     |
[INFO] [stdout] 412 |          -> Result<(LogProb, LogProb), Box<dyn Error>> {
[INFO] [stdout]     |                                            +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: this method call resolves to `<&[T; N] as IntoIterator>::into_iter` (due to backwards compatibility), but will resolve to <[T; N] as IntoIterator>::into_iter in Rust 2021
[INFO] [stdout]    --> src/model/sample.rs:612:79
[INFO] [stdout]     |
[INFO] [stdout] 612 |         for (record, true_alt_prob) in records.into_iter().zip(true_alt_probs.into_iter()) {
[INFO] [stdout]     |                                                                               ^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this changes meaning in Rust 2021
[INFO] [stdout]     = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/IntoIterator-for-arrays.html>
[INFO] [stdout]     = note: `#[warn(array_into_iter)]` on by default
[INFO] [stdout] help: use `.iter()` instead of `.into_iter()` to avoid ambiguity
[INFO] [stdout]     |
[INFO] [stdout] 612 |         for (record, true_alt_prob) in records.into_iter().zip(true_alt_probs.iter()) {
[INFO] [stdout]     |                                                                               ~~~~
[INFO] [stdout] help: or use `IntoIterator::into_iter(..)` instead of `.into_iter()` to explicitly iterate by value
[INFO] [stdout]     |
[INFO] [stdout] 612 |         for (record, true_alt_prob) in records.into_iter().zip(IntoIterator::into_iter(true_alt_probs)) {
[INFO] [stdout]     |                                                                ++++++++++++++++++++++++              ~
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: linking with `cc` failed: exit status: 1
[INFO] [stdout]   |
[INFO] [stdout]   = note: LC_ALL="C" PATH="/opt/rustwide/rustup-home/toolchains/beta-2023-12-22-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/bin:/opt/rustwide/cargo-home/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin" VSLANG="1033" "cc" "-m64" "/tmp/rustcSyQtmm/symbols.o" "/opt/rustwide/target/debug/deps/libprosic-e8f0a1b280a0c281.libprosic.15a3d9e2598c7994-cgu.00.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-e8f0a1b280a0c281.libprosic.15a3d9e2598c7994-cgu.01.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-e8f0a1b280a0c281.libprosic.15a3d9e2598c7994-cgu.02.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-e8f0a1b280a0c281.libprosic.15a3d9e2598c7994-cgu.03.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-e8f0a1b280a0c281.libprosic.15a3d9e2598c7994-cgu.04.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-e8f0a1b280a0c281.libprosic.15a3d9e2598c7994-cgu.05.rcgu.o" 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"/opt/rustwide/target/debug/deps/libtinyvec-dcbbce603bc23510.rlib" "/opt/rustwide/target/debug/deps/libtinyvec_macros-333661e3b238a9a3.rlib" "/opt/rustwide/target/debug/deps/libunicode_bidi-1d5be417c01f34b2.rlib" "/opt/rustwide/target/debug/deps/libmatches-59081526691d27d6.rlib" "/opt/rustwide/target/debug/deps/liblazy_static-297a58a4a5d545f0.rlib" "/opt/rustwide/target/debug/deps/libitertools-ba4d7966fd11df9e.rlib" "/opt/rustwide/target/debug/deps/libieee754-6952c5f2b737dfeb.rlib" "/opt/rustwide/target/debug/deps/libbitflags-5beffbe465931980.rlib" "/opt/rustwide/target/debug/deps/libbio-2f630989b9371bc0.rlib" "/opt/rustwide/target/debug/deps/libfxhash-2979afee709db725.rlib" "/opt/rustwide/target/debug/deps/libbyteorder-6ac88002c46ec63a.rlib" "/opt/rustwide/target/debug/deps/libvec_map-df240a8a19cb2d10.rlib" "/opt/rustwide/target/debug/deps/libstatrs-11ec4aeea78988c1.rlib" "/opt/rustwide/target/debug/deps/librand-ffb1ac4285635f5e.rlib" "/opt/rustwide/target/debug/deps/librand-cce0d6e04e1f0732.rlib" "/opt/rustwide/target/debug/deps/liblibc-c478bf3839c877e8.rlib" "/opt/rustwide/target/debug/deps/libfnv-953831fe314029b4.rlib" "/opt/rustwide/target/debug/deps/libbv-6027b0add9c250d0.rlib" "/opt/rustwide/target/debug/deps/libquick_error-4f8a11f127df9c4f.rlib" "/opt/rustwide/target/debug/deps/libordered_float-1124beb2f2bf5a30.rlib" "/opt/rustwide/target/debug/deps/libnum_integer-cc320e8663689ac5.rlib" "/opt/rustwide/target/debug/deps/libnewtype_derive-cad98274d9bf758f.rlib" "/opt/rustwide/target/debug/deps/libndarray-c62ea63149969b8d.rlib" "/opt/rustwide/target/debug/deps/libnum_complex-9dc1149657c6de30.rlib" "/opt/rustwide/target/debug/deps/libmatrixmultiply-e7211cf3a67eb699.rlib" "/opt/rustwide/target/debug/deps/librawpointer-c9a09bdcc3e94dd6.rlib" "/opt/rustwide/target/debug/deps/libmultimap-5d910ee7117b1707.rlib" "/opt/rustwide/target/debug/deps/libitertools_num-a7fd8d0435481b95.rlib" "/opt/rustwide/target/debug/deps/libitertools-f81b7192d9b1aace.rlib" "/opt/rustwide/target/debug/deps/libeither-53fc968d8fef4dab.rlib" "/opt/rustwide/target/debug/deps/libcustom_derive-213f447f7e552ddf.rlib" "/opt/rustwide/target/debug/deps/libcsv-251b072f9e25dc63.rlib" "/opt/rustwide/target/debug/deps/libryu-4b03a7708da1319d.rlib" "/opt/rustwide/target/debug/deps/libitoa-34968a9f29c36fec.rlib" "/opt/rustwide/target/debug/deps/libcsv_core-d58bb5559c5db158.rlib" "/opt/rustwide/target/debug/deps/libserde-ea5bc6a131a1e228.rlib" "/opt/rustwide/target/debug/deps/libbytecount-86b9b06fabc3e3ed.rlib" "/opt/rustwide/target/debug/deps/libbit_set-0010a728dbb518a0.rlib" "/opt/rustwide/target/debug/deps/libbit_vec-4eb266c3039ae585.rlib" "/opt/rustwide/target/debug/deps/libapprox-a31f75f2cd515067.rlib" "/opt/rustwide/target/debug/deps/libnum_traits-d78ef80edf268e06.rlib" "/opt/rustwide/target/debug/deps/libbio_types-eaf5b16ce5a6ebcb.rlib" "/opt/rustwide/target/debug/deps/libthiserror-8c15acb09feb03ec.rlib" "/opt/rustwide/target/debug/deps/libregex-6b2e15812834269a.rlib" "/opt/rustwide/target/debug/deps/libregex_automata-18e9b4bafe25d656.rlib" "/opt/rustwide/target/debug/deps/libaho_corasick-0efee17d6ff570a3.rlib" "/opt/rustwide/target/debug/deps/libmemchr-14a47255884553ca.rlib" "/opt/rustwide/target/debug/deps/libregex_syntax-2fba322c2516c6a3.rlib" "/opt/rustwide/target/debug/deps/liblazy_static-efa3519517df6cf0.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2023-12-22-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libstd-0672489a78b613de.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2023-12-22-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libpanic_unwind-7eb3ffc34a49f675.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2023-12-22-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libobject-6478a9daa4bee8e2.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2023-12-22-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libmemchr-0c75d871a5c3923d.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2023-12-22-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libaddr2line-d163ef63ad37bb71.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2023-12-22-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libgimli-8a3fd810a85b9f4c.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2023-12-22-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_demangle-462a2cde8c5dfc10.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2023-12-22-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libstd_detect-cb06ac9f54713f71.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2023-12-22-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libhashbrown-f20bfd1f8e59b393.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2023-12-22-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_alloc-1ef460949b49da4b.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2023-12-22-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libminiz_oxide-2cb0c0ffe4f87514.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2023-12-22-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libadler-58d841eb322a11a2.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2023-12-22-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libunwind-aa2ae0b0a9d11533.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2023-12-22-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcfg_if-23874e15830ed336.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2023-12-22-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/liblibc-e47cddc003bce885.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2023-12-22-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/liballoc-c22b13b48a8f128e.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2023-12-22-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_core-e46bc3da6d7c462f.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2023-12-22-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcore-8d1ac131d3cb2645.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2023-12-22-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcompiler_builtins-a1b43df8c6899c1f.rlib" "-Wl,-Bdynamic" "-llzma" "-lz" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/rustup-home/toolchains/beta-2023-12-22-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/opt/rustwide/target/debug/deps/libprosic-e8f0a1b280a0c281" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs"
[INFO] [stdout]   = note: /usr/bin/ld: /opt/rustwide/target/debug/deps/librgsl-5e17d8d7cd78e8ac.rlib(rgsl-5e17d8d7cd78e8ac.rgsl.7ea0da7a3801a43e-cgu.1.rcgu.o): in function `rgsl::randist::gaussian::gaussian_pdf':
[INFO] [stdout]           /opt/rustwide/cargo-home/registry/src/index.crates.io-6f17d22bba15001f/GSL-1.1.0/src/randist/gaussian.rs:20: undefined reference to `gsl_ran_gaussian_pdf'
[INFO] [stdout]           /usr/bin/ld: /opt/rustwide/target/debug/deps/librgsl-5e17d8d7cd78e8ac.rlib(rgsl-5e17d8d7cd78e8ac.rgsl.7ea0da7a3801a43e-cgu.1.rcgu.o): in function `rgsl::randist::gaussian::ugaussian_P':
[INFO] [stdout]           /opt/rustwide/cargo-home/registry/src/index.crates.io-6f17d22bba15001f/GSL-1.1.0/src/randist/gaussian.rs:73: undefined reference to `gsl_cdf_ugaussian_P'
[INFO] [stdout]           /usr/bin/ld: /opt/rustwide/target/debug/deps/librgsl-5e17d8d7cd78e8ac.rlib(rgsl-5e17d8d7cd78e8ac.rgsl.7ea0da7a3801a43e-cgu.5.rcgu.o): in function `rgsl::error::erfc':
[INFO] [stdout]           /opt/rustwide/cargo-home/registry/src/index.crates.io-6f17d22bba15001f/GSL-1.1.0/src/error.rs:28: undefined reference to `gsl_sf_erfc'
[INFO] [stdout]           collect2: error: ld returned 1 exit status
[INFO] [stdout]           
[INFO] [stdout]   = note: some `extern` functions couldn't be found; some native libraries may need to be installed or have their path specified
[INFO] [stdout]   = note: use the `-l` flag to specify native libraries to link
[INFO] [stdout]   = note: use the `cargo:rustc-link-lib` directive to specify the native libraries to link with Cargo (see https://doc.rust-lang.org/cargo/reference/build-scripts.html#cargorustc-link-libkindname)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to 1 previous error; 34 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `libprosic` (lib test) due to 2 previous errors; 34 warnings emitted
[INFO] running `Command { std: "docker" "inspect" "ee4cee9716eecf5c9aa3b3b826f944819a479b39f2bfca9c90ec981bc3506c06", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ee4cee9716eecf5c9aa3b3b826f944819a479b39f2bfca9c90ec981bc3506c06", kill_on_drop: false }`
[INFO] [stdout] ee4cee9716eecf5c9aa3b3b826f944819a479b39f2bfca9c90ec981bc3506c06
