[INFO] cloning repository https://github.com/COMBINE-lab/TreeTerminus
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/COMBINE-lab/TreeTerminus" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FCOMBINE-lab%2FTreeTerminus", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FCOMBINE-lab%2FTreeTerminus'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 1b24c30b962c9dba8cd7cb714b1840a79947938d
[INFO] testing COMBINE-lab/TreeTerminus against 1.75.0 for beta-1.76-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FCOMBINE-lab%2FTreeTerminus" "/workspace/builds/worker-5-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc1/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/COMBINE-lab/TreeTerminus on toolchain 1.75.0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.75.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/COMBINE-lab/TreeTerminus
[INFO] finished tweaking git repo https://github.com/COMBINE-lab/TreeTerminus
[INFO] tweaked toml for git repo https://github.com/COMBINE-lab/TreeTerminus written to /workspace/builds/worker-5-tc1/source/Cargo.toml
[INFO] crate git repo https://github.com/COMBINE-lab/TreeTerminus already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.75.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating git repository `https://github.com/a8m/pb`
[INFO] [stderr]     Updating git repository `https://github.com/jneem/refinery`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded serde_stacker v0.1.8
[INFO] [stderr]   Downloaded noisy_float v0.1.15
[INFO] [stderr]   Downloaded escargot v0.5.7
[INFO] [stderr]   Downloaded indicatif v0.13.0
[INFO] [stderr]   Downloaded ndarray-stats v0.3.0
[INFO] [stderr]   Downloaded GSL v4.0.4
[INFO] [stderr]   Downloaded GSL-sys v2.0.2
[INFO] [stderr]   Downloaded fsio v0.2.0
[INFO] [stderr]   Downloaded run_script v0.7.0
[INFO] [stderr]   Downloaded assert_cmd v0.12.2
[INFO] [stderr]   Downloaded sorted-list v0.2.0
[INFO] [stderr]   Downloaded binary-heap-plus v0.2.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+1.75.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 884fe1560874af2ceaa14cd15361c4cbb7cd20fbf12de9ae0c08771d1269b170
[INFO] running `Command { std: "docker" "start" "-a" "884fe1560874af2ceaa14cd15361c4cbb7cd20fbf12de9ae0c08771d1269b170", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "884fe1560874af2ceaa14cd15361c4cbb7cd20fbf12de9ae0c08771d1269b170", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "884fe1560874af2ceaa14cd15361c4cbb7cd20fbf12de9ae0c08771d1269b170", kill_on_drop: false }`
[INFO] [stdout] 884fe1560874af2ceaa14cd15361c4cbb7cd20fbf12de9ae0c08771d1269b170
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+1.75.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 4b01565e7fa43f2e3bdc2f14fde9fc1bcc13cd2381a6edab1f4c7ae95bf7be35
[INFO] running `Command { std: "docker" "start" "-a" "4b01565e7fa43f2e3bdc2f14fde9fc1bcc13cd2381a6edab1f4c7ae95bf7be35", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.140
[INFO] [stderr]    Compiling proc-macro2 v1.0.54
[INFO] [stderr]    Compiling quote v1.0.26
[INFO] [stderr]    Compiling libm v0.2.6
[INFO] [stderr]    Compiling serde_derive v1.0.159
[INFO] [stderr]    Compiling serde v1.0.159
[INFO] [stderr]    Compiling autocfg v0.1.8
[INFO] [stderr]    Compiling rand_core v0.4.2
[INFO] [stderr]    Compiling log v0.4.17
[INFO] [stderr]    Compiling crossbeam-utils v0.8.15
[INFO] [stderr]    Compiling rand_core v0.3.1
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling serde_json v1.0.95
[INFO] [stderr]    Compiling aho-corasick v0.7.20
[INFO] [stderr]    Compiling psm v0.1.21
[INFO] [stderr]    Compiling rand_pcg v0.1.2
[INFO] [stderr]    Compiling rand_chacha v0.1.1
[INFO] [stderr]    Compiling syn v2.0.11
[INFO] [stderr]    Compiling num-traits v0.2.15
[INFO] [stderr]    Compiling getrandom v0.2.8
[INFO] [stderr]    Compiling getrandom v0.1.16
[INFO] [stderr]    Compiling lock_api v0.4.9
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling rand_core v0.5.1
[INFO] [stderr]    Compiling hashbrown v0.12.3
[INFO] [stderr]    Compiling regex-syntax v0.6.28
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling pkg-config v0.3.26
[INFO] [stderr]    Compiling parking_lot_core v0.9.7
[INFO] [stderr]    Compiling matrixmultiply v0.2.4
[INFO] [stderr]    Compiling num-integer v0.1.45
[INFO] [stderr]    Compiling indexmap v1.9.3
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling GSL-sys v2.0.2
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling time v0.1.45
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.14
[INFO] [stderr]    Compiling crossbeam-channel v0.5.7
[INFO] [stderr]    Compiling stacker v0.1.15
[INFO] [stderr]    Compiling rand v0.6.5
[INFO] [stderr]    Compiling num-bigint v0.3.3
[INFO] [stderr]    Compiling num-rational v0.2.4
[INFO] [stderr]    Compiling iana-time-zone v0.1.53
[INFO] [stderr]    Compiling paste v1.0.12
[INFO] [stderr]    Compiling anyhow v1.0.70
[INFO] [stderr]    Compiling smallvec v1.10.0
[INFO] [stderr]    Compiling escargot v0.5.7
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling predicates-core v1.0.6
[INFO] [stderr]    Compiling ndarray v0.13.1
[INFO] [stderr]    Compiling destructure_traitobject v0.2.0
[INFO] [stderr]    Compiling doc-comment v0.3.3
[INFO] [stderr]    Compiling unsafe-any-ors v1.0.0
[INFO] [stderr]    Compiling yaml-rust v0.4.5
[INFO] [stderr]    Compiling humantime v1.3.0
[INFO] [stderr]    Compiling regex v1.7.1
[INFO] [stderr]    Compiling chrono v0.4.24
[INFO] [stderr]    Compiling crossbeam-deque v0.8.3
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling ordered-float v2.10.0
[INFO] [stderr]    Compiling approx v0.3.2
[INFO] [stderr]    Compiling thiserror-impl v1.0.40
[INFO] [stderr]    Compiling rand_chacha v0.2.2
[INFO] [stderr]    Compiling num_cpus v1.15.0
[INFO] [stderr]    Compiling rand_os v0.1.3
[INFO] [stderr]    Compiling rand_isaac v0.1.1
[INFO] [stderr]    Compiling rand_hc v0.1.0
[INFO] [stderr]    Compiling rand_xorshift v0.1.1
[INFO] [stderr]    Compiling rand_jitter v0.1.4
[INFO] [stderr]    Compiling termtree v0.4.1
[INFO] [stderr]    Compiling difference v2.0.0
[INFO] [stderr]    Compiling once_cell v1.17.1
[INFO] [stderr]    Compiling predicates-tree v1.0.9
[INFO] [stderr]    Compiling miniz_oxide v0.6.2
[INFO] [stderr]    Compiling predicates v1.0.8
[INFO] [stderr]    Compiling thiserror v1.0.40
[INFO] [stderr]    Compiling console v0.15.5
[INFO] [stderr]    Compiling rayon-core v1.11.0
[INFO] [stderr]    Compiling rand v0.7.3
[INFO] [stderr]    Compiling generic-array v0.12.4
[INFO] [stderr]    Compiling alga v0.9.3
[INFO] [stderr]    Compiling parking_lot v0.12.1
[INFO] [stdout] error: linking with `cc` failed: exit status: 1
[INFO] [stdout]   |
[INFO] [stdout]   = note: LC_ALL="C" PATH="/opt/rustwide/rustup-home/toolchains/1.75.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/bin:/opt/rustwide/cargo-home/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin" VSLANG="1033" "cc" "-Wl,--version-script=/tmp/rustchStqaM/list" "-Wl,--no-undefined-version" "-m64" "/tmp/rustchStqaM/symbols.o" "/opt/rustwide/target/debug/deps/gsl_sys-ed3b5db53caa0e8f.gsl_sys.b7d569ce64038155-cgu.0.rcgu.o" "/opt/rustwide/target/debug/deps/gsl_sys-ed3b5db53caa0e8f.2fb2qp083ps4zv92.rcgu.rmeta" "-Wl,--as-needed" "-L" "/opt/rustwide/target/debug/deps" "-L" "/opt/rustwide/rustup-home/toolchains/1.75.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-Wl,-Bdynamic" "-lgsl" "-lgslcblas" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/liblibc-d595d11937a29e99.rlib" "-L" "/opt/rustwide/rustup-home/toolchains/1.75.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-Wl,-Bdynamic" "-lstd-90f6ddbf82de36ec" "-Wl,-Bstatic" "/opt/rustwide/rustup-home/toolchains/1.75.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcompiler_builtins-8e138eaf26ebb4a8.rlib" "-Wl,-Bdynamic" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/rustup-home/toolchains/1.75.0-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/opt/rustwide/target/debug/deps/libgsl_sys-ed3b5db53caa0e8f.so" "-shared" "-Wl,-z,relro,-z,now" "-nodefaultlibs"
[INFO] [stdout]   = note: /usr/bin/ld: cannot find -lgsl: No such file or directory
[INFO] [stdout]           /usr/bin/ld: cannot find -lgslcblas: No such file or directory
[INFO] [stdout]           collect2: error: ld returned 1 exit status
[INFO] [stdout]           
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to previous error
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `GSL-sys` (lib) due to 2 previous errors
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] running `Command { std: "docker" "inspect" "4b01565e7fa43f2e3bdc2f14fde9fc1bcc13cd2381a6edab1f4c7ae95bf7be35", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4b01565e7fa43f2e3bdc2f14fde9fc1bcc13cd2381a6edab1f4c7ae95bf7be35", kill_on_drop: false }`
[INFO] [stdout] 4b01565e7fa43f2e3bdc2f14fde9fc1bcc13cd2381a6edab1f4c7ae95bf7be35
