[INFO] fetching crate chemfiles-sys 0.10.3...
[INFO] documenting chemfiles-sys-0.10.3 against 1.69.0 for beta-1.70-rustdoc-1
[INFO] extracting crate chemfiles-sys 0.10.3 into /workspace/builds/worker-6-tc1/source
[INFO] validating manifest of crates.io crate chemfiles-sys 0.10.3 on toolchain 1.69.0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.69.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate chemfiles-sys 0.10.3
[INFO] finished tweaking crates.io crate chemfiles-sys 0.10.3
[INFO] tweaked toml for crates.io crate chemfiles-sys 0.10.3 written to /workspace/builds/worker-6-tc1/source/Cargo.toml
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" __CARGO_TEST_CHANNEL_OVERRIDE_DO_NOT_USE_THIS="nightly" "/workspace/cargo-home/bin/cargo" "+1.69.0" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }`
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.69.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5ff2268d62e97bff2cde7d5815dd6ed5b47097566f13b8d0ca110b04b60e07ed" "/opt/rustwide/cargo-home/bin/cargo" "+1.69.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 4899ce9edaa476bafdaf9da4fd24392de1766e5932e3b52ddac310611b22bbc7
[INFO] running `Command { std: "docker" "start" "-a" "4899ce9edaa476bafdaf9da4fd24392de1766e5932e3b52ddac310611b22bbc7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "4899ce9edaa476bafdaf9da4fd24392de1766e5932e3b52ddac310611b22bbc7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4899ce9edaa476bafdaf9da4fd24392de1766e5932e3b52ddac310611b22bbc7", kill_on_drop: false }`
[INFO] [stdout] 4899ce9edaa476bafdaf9da4fd24392de1766e5932e3b52ddac310611b22bbc7
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5ff2268d62e97bff2cde7d5815dd6ed5b47097566f13b8d0ca110b04b60e07ed" "/opt/rustwide/cargo-home/bin/cargo" "+1.69.0" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] dadfc5fd4581b080f678bbd24bda259767c5c65aac15d9a80a0595c57a03f783
[INFO] running `Command { std: "docker" "start" "-a" "dadfc5fd4581b080f678bbd24bda259767c5c65aac15d9a80a0595c57a03f783", kill_on_drop: false }`
[INFO] [stderr]    Compiling cmake v0.1.50
[INFO] [stderr]    Compiling chemfiles-sys v0.10.3 (/opt/rustwide/workdir)
[INFO] [stderr] error: failed to run custom build command for `chemfiles-sys v0.10.3 (/opt/rustwide/workdir)`
[INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation.
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/chemfiles-sys-a5133b47169bb26d/build-script-build` (exit status: 101)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   CMAKE_TOOLCHAIN_FILE_x86_64-unknown-linux-gnu = None
[INFO] [stderr]   CMAKE_TOOLCHAIN_FILE_x86_64_unknown_linux_gnu = None
[INFO] [stderr]   HOST_CMAKE_TOOLCHAIN_FILE = None
[INFO] [stderr]   CMAKE_TOOLCHAIN_FILE = None
[INFO] [stderr]   CMAKE_GENERATOR_x86_64-unknown-linux-gnu = None
[INFO] [stderr]   CMAKE_GENERATOR_x86_64_unknown_linux_gnu = None
[INFO] [stderr]   HOST_CMAKE_GENERATOR = None
[INFO] [stderr]   CMAKE_GENERATOR = None
[INFO] [stderr]   CMAKE_PREFIX_PATH_x86_64-unknown-linux-gnu = None
[INFO] [stderr]   CMAKE_PREFIX_PATH_x86_64_unknown_linux_gnu = None
[INFO] [stderr]   HOST_CMAKE_PREFIX_PATH = None
[INFO] [stderr]   CMAKE_PREFIX_PATH = None
[INFO] [stderr]   CMAKE_x86_64-unknown-linux-gnu = None
[INFO] [stderr]   CMAKE_x86_64_unknown_linux_gnu = None
[INFO] [stderr]   HOST_CMAKE = None
[INFO] [stderr]   CMAKE = None
[INFO] [stderr]   running: cd "/opt/rustwide/target/debug/build/chemfiles-sys-d12b7ffadc3b4bc8/out/build" && CMAKE_PREFIX_PATH="" "cmake" "/opt/rustwide/workdir/." "-DCHEMFILES_VERSION=0.10.3" "-DCHFL_RUST_PREBUILT_TARGET=x86_64-linux-gnu" "-DCHFL_RUST_PREBUILT_SHA256=0a2a839885effae7df0c279ad024b6fa7cb73666c2c2fe9b6675cebc614b088e" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/chemfiles-sys-d12b7ffadc3b4bc8/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Debug"
[INFO] [stderr]   -- The CXX compiler identification is GNU 11.3.0
[INFO] [stderr]   -- Detecting CXX compiler ABI info
[INFO] [stderr]   -- Detecting CXX compiler ABI info - done
[INFO] [stderr]   -- Check for working CXX compiler: /usr/bin/c++ - skipped
[INFO] [stderr]   -- Detecting CXX compile features
[INFO] [stderr]   -- Detecting CXX compile features - done
[INFO] [stderr]   -- trying to download https://github.com/chemfiles/chemfiles-prebuilt/releases/download/v0.10.3/chemfiles-static.v0.10.3.x86_64-linux-gnu.tar.gz
[INFO] [stderr]   -- failed to download prebuilt chemfiles, building from sources
[INFO] [stderr]   -- The C compiler identification is GNU 11.3.0
[INFO] [stderr]   -- Detecting C compiler ABI info
[INFO] [stderr]   -- Detecting C compiler ABI info - done
[INFO] [stderr]   -- Check for working C compiler: /usr/bin/cc - skipped
[INFO] [stderr]   -- Detecting C compile features
[INFO] [stderr]   -- Detecting C compile features - done
[INFO] [stderr]   -- Unpacking zlib sources
[INFO] [stderr]   -- Unpacking lzma sources
[INFO] [stderr]   -- Unpacking bzip2 sources
[INFO] [stderr]   -- Unpacking fmt sources
[INFO] [stderr]   -- Unpacking toml11 sources
[INFO] [stderr]   -- Unpacking tng sources
[INFO] [stderr]   -- Unpacking molfiles sources
[INFO] [stderr]   -- Unpacking mmtf-cpp sources
[INFO] [stderr]   -- Unpacking pugixml sources
[INFO] [stderr]   -- Unpacking gemmi sources
[INFO] [stderr]   -- Configuring done
[INFO] [stderr]   -- Generating done
[INFO] [stderr]   -- Build files have been written to: /opt/rustwide/target/debug/build/chemfiles-sys-d12b7ffadc3b4bc8/out/build
[INFO] [stderr]   running: cd "/opt/rustwide/target/debug/build/chemfiles-sys-d12b7ffadc3b4bc8/out/build" && MAKEFLAGS="-j --jobserver-fds=8,9 --jobserver-auth=8,9" "cmake" "--build" "." "--target" "install" "--config" "Debug"
[INFO] [stderr]   [  0%] Building CXX object chemfiles/external/fmt/CMakeFiles/fmt.dir/src/format.cc.o
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[INFO] [stderr]   [  4%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Atom.cpp.o
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[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr]   CMake Warning (dev) at chemfiles/CMakeLists.txt:35 (option):
[INFO] [stderr]     Policy CMP0077 is not set: option() honors normal variables.  Run "cmake
[INFO] [stderr]     --help-policy CMP0077" for policy details.  Use the cmake_policy command to
[INFO] [stderr]     set the policy and suppress this warning.
[INFO] [stderr] 
[INFO] [stderr]     For compatibility with older versions of CMake, option is clearing the
[INFO] [stderr]     normal variable 'BUILD_SHARED_LIBS'.
[INFO] [stderr]   This warning is for project developers.  Use -Wno-dev to suppress it.
[INFO] [stderr] 
[INFO] [stderr]   CMake Warning:
[INFO] [stderr]     Manually-specified variables were not used by the project:
[INFO] [stderr] 
[INFO] [stderr]       CMAKE_ASM_COMPILER
[INFO] [stderr]       CMAKE_ASM_FLAGS
[INFO] [stderr] 
[INFO] [stderr] 
[INFO] [stderr]   c++: fatal error: Killed signal terminated program cc1plus
[INFO] [stderr]   compilation terminated.
[INFO] [stderr]   gmake[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:146: chemfiles/CMakeFiles/chemfiles_objects.dir/src/FormatFactory.cpp.o] Error 1
[INFO] [stderr]   gmake[2]: *** Waiting for unfinished jobs....
[INFO] [stderr]   gmake[1]: *** [CMakeFiles/Makefile2:214: chemfiles/CMakeFiles/chemfiles_objects.dir/all] Error 2
[INFO] [stderr]   gmake: *** [Makefile:136: all] Error 2
[INFO] [stderr]   thread 'main' panicked at '
[INFO] [stderr]   command did not execute successfully, got: exit status: 2
[INFO] [stderr] 
[INFO] [stderr]   build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.50/src/lib.rs:1098:5
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x55555a4c7c3a - std::backtrace_rs::backtrace::libunwind::trace::ha9053a9a07ca49cb
[INFO] [stderr]                                  at /rustc/84c898d65adf2f39a5a98507f1fe0ce10a2b8dbc/library/std/src/../../backtrace/src/backtrace/libunwind.rs:93:5
[INFO] [stderr]      1:     0x55555a4c7c3a - std::backtrace_rs::backtrace::trace_unsynchronized::h9c2852a457ad564e
[INFO] [stderr]                                  at /rustc/84c898d65adf2f39a5a98507f1fe0ce10a2b8dbc/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5
[INFO] [stderr]      2:     0x55555a4c7c3a - std::sys_common::backtrace::_print_fmt::h457936fbfaa0070f
[INFO] [stderr]                                  at /rustc/84c898d65adf2f39a5a98507f1fe0ce10a2b8dbc/library/std/src/sys_common/backtrace.rs:65:5
[INFO] [stderr]      3:     0x55555a4c7c3a - <std::sys_common::backtrace::_print::DisplayBacktrace as core::fmt::Display>::fmt::h5779d7bf7f70cb0c
[INFO] [stderr]                                  at /rustc/84c898d65adf2f39a5a98507f1fe0ce10a2b8dbc/library/std/src/sys_common/backtrace.rs:44:22
[INFO] [stderr]      4:     0x55555a4e7f9e - core::fmt::write::h5a4baaff1bcd3eb5
[INFO] [stderr]                                  at /rustc/84c898d65adf2f39a5a98507f1fe0ce10a2b8dbc/library/core/src/fmt/mod.rs:1232:17
[INFO] [stderr]      5:     0x55555a4c4cf5 - std::io::Write::write_fmt::h4bc1f301cb9e9cce
[INFO] [stderr]                                  at /rustc/84c898d65adf2f39a5a98507f1fe0ce10a2b8dbc/library/std/src/io/mod.rs:1684:15
[INFO] [stderr]      6:     0x55555a4c7a05 - std::sys_common::backtrace::_print::h5fcdc36060f177e8
[INFO] [stderr]                                  at /rustc/84c898d65adf2f39a5a98507f1fe0ce10a2b8dbc/library/std/src/sys_common/backtrace.rs:47:5
[INFO] [stderr]      7:     0x55555a4c7a05 - std::sys_common::backtrace::print::h54ca9458b876c8bf
[INFO] [stderr]                                  at /rustc/84c898d65adf2f39a5a98507f1fe0ce10a2b8dbc/library/std/src/sys_common/backtrace.rs:34:9
[INFO] [stderr]      8:     0x55555a4c93df - std::panicking::default_hook::{{closure}}::hbe471161c7664ed6
[INFO] [stderr]                                  at /rustc/84c898d65adf2f39a5a98507f1fe0ce10a2b8dbc/library/std/src/panicking.rs:271:22
[INFO] [stderr]      9:     0x55555a4c911b - std::panicking::default_hook::ha3500da57aa4ac4f
[INFO] [stderr]                                  at /rustc/84c898d65adf2f39a5a98507f1fe0ce10a2b8dbc/library/std/src/panicking.rs:290:9
[INFO] [stderr]     10:     0x55555a4c9988 - std::panicking::rust_panic_with_hook::h50c09d000dc561d2
[INFO] [stderr]                                  at /rustc/84c898d65adf2f39a5a98507f1fe0ce10a2b8dbc/library/std/src/panicking.rs:692:13
[INFO] [stderr]     11:     0x55555a4c9889 - std::panicking::begin_panic_handler::{{closure}}::h9e2b2176e00e0d9c
[INFO] [stderr]                                  at /rustc/84c898d65adf2f39a5a98507f1fe0ce10a2b8dbc/library/std/src/panicking.rs:583:13
[INFO] [stderr]     12:     0x55555a4c80a6 - std::sys_common::backtrace::__rust_end_short_backtrace::h5739b8e512c09d02
[INFO] [stderr]                                  at /rustc/84c898d65adf2f39a5a98507f1fe0ce10a2b8dbc/library/std/src/sys_common/backtrace.rs:150:18
[INFO] [stderr]     13:     0x55555a4c9592 - rust_begin_unwind
[INFO] [stderr]                                  at /rustc/84c898d65adf2f39a5a98507f1fe0ce10a2b8dbc/library/std/src/panicking.rs:579:5
[INFO] [stderr]     14:     0x55555a44a7a3 - core::panicking::panic_fmt::hf33a1475b4dc5c3e
[INFO] [stderr]                                  at /rustc/84c898d65adf2f39a5a98507f1fe0ce10a2b8dbc/library/core/src/panicking.rs:64:14
[INFO] [stderr]     15:     0x55555a45685f - cmake::fail::he523feb31d426beb
[INFO] [stderr]     16:     0x55555a456353 - cmake::run::h28b9026df7e93e8d
[INFO] [stderr]     17:     0x55555a452e83 - cmake::Config::build::h36ec1f0187cbfcd5
[INFO] [stderr]     18:     0x55555a44b6a9 - build_script_build::build_chemfiles::h65fee0b15cd52017
[INFO] [stderr]     19:     0x55555a44b313 - build_script_build::main::h8488d22797efb59b
[INFO] [stderr]     20:     0x55555a44d333 - core::ops::function::FnOnce::call_once::hc93609d1740b811e
[INFO] [stderr]     21:     0x55555a44bea9 - std::sys_common::backtrace::__rust_begin_short_backtrace::h28cc419ee18358cc
[INFO] [stderr]     22:     0x55555a44dc99 - std::rt::lang_start::{{closure}}::hf5167637bf98ad1c
[INFO] [stderr]     23:     0x55555a4c0c9c - core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once::hd6efcd3bec896f2c
[INFO] [stderr]                                  at /rustc/84c898d65adf2f39a5a98507f1fe0ce10a2b8dbc/library/core/src/ops/function.rs:287:13
[INFO] [stderr]     24:     0x55555a4c0c9c - std::panicking::try::do_call::hce04e543bb1f4cbb
[INFO] [stderr]                                  at /rustc/84c898d65adf2f39a5a98507f1fe0ce10a2b8dbc/library/std/src/panicking.rs:487:40
[INFO] [stderr]     25:     0x55555a4c0c9c - std::panicking::try::h3342dd4e1f680968
[INFO] [stderr]                                  at /rustc/84c898d65adf2f39a5a98507f1fe0ce10a2b8dbc/library/std/src/panicking.rs:451:19
[INFO] [stderr]     26:     0x55555a4c0c9c - std::panic::catch_unwind::h148ce1e59ac0cee7
[INFO] [stderr]                                  at /rustc/84c898d65adf2f39a5a98507f1fe0ce10a2b8dbc/library/std/src/panic.rs:140:14
[INFO] [stderr]     27:     0x55555a4c0c9c - std::rt::lang_start_internal::{{closure}}::h25f9dda2057a67fe
[INFO] [stderr]                                  at /rustc/84c898d65adf2f39a5a98507f1fe0ce10a2b8dbc/library/std/src/rt.rs:148:48
[INFO] [stderr]     28:     0x55555a4c0c9c - std::panicking::try::do_call::h7caaaeaf9401650b
[INFO] [stderr]                                  at /rustc/84c898d65adf2f39a5a98507f1fe0ce10a2b8dbc/library/std/src/panicking.rs:487:40
[INFO] [stderr]     29:     0x55555a4c0c9c - std::panicking::try::he7d15285746cbbc2
[INFO] [stderr]                                  at /rustc/84c898d65adf2f39a5a98507f1fe0ce10a2b8dbc/library/std/src/panicking.rs:451:19
[INFO] [stderr]     30:     0x55555a4c0c9c - std::panic::catch_unwind::h89fb4f50c0301fe0
[INFO] [stderr]                                  at /rustc/84c898d65adf2f39a5a98507f1fe0ce10a2b8dbc/library/std/src/panic.rs:140:14
[INFO] [stderr]     31:     0x55555a4c0c9c - std::rt::lang_start_internal::h078acd489417d3c1
[INFO] [stderr]                                  at /rustc/84c898d65adf2f39a5a98507f1fe0ce10a2b8dbc/library/std/src/rt.rs:148:20
[INFO] [stderr]     32:     0x55555a44dc77 - std::rt::lang_start::h791ae64b3198ef4b
[INFO] [stderr]     33:     0x55555a44be95 - main
[INFO] [stderr]     34:     0x7ff9aa0f9d90 - <unknown>
[INFO] [stderr]     35:     0x7ff9aa0f9e40 - __libc_start_main
[INFO] [stderr]     36:     0x55555a44ad25 - _start
[INFO] [stderr]     37:                0x0 - <unknown>
[INFO] running `Command { std: "docker" "inspect" "dadfc5fd4581b080f678bbd24bda259767c5c65aac15d9a80a0595c57a03f783", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "dadfc5fd4581b080f678bbd24bda259767c5c65aac15d9a80a0595c57a03f783", kill_on_drop: false }`
[INFO] [stdout] dadfc5fd4581b080f678bbd24bda259767c5c65aac15d9a80a0595c57a03f783
