[INFO] cloning repository https://github.com/mooreryan/bio_ballyhoo
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/mooreryan/bio_ballyhoo" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmooreryan%2Fbio_ballyhoo", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmooreryan%2Fbio_ballyhoo'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 4895a9c2f64f3443dbc032002a5d6a371a1062d0
[INFO] documenting mooreryan/bio_ballyhoo against beta-2023-04-20 for beta-1.70-rustdoc-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmooreryan%2Fbio_ballyhoo" "/workspace/builds/worker-4-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc2/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/mooreryan/bio_ballyhoo on toolchain beta-2023-04-20
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2023-04-20" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/mooreryan/bio_ballyhoo
[INFO] finished tweaking git repo https://github.com/mooreryan/bio_ballyhoo
[INFO] tweaked toml for git repo https://github.com/mooreryan/bio_ballyhoo written to /workspace/builds/worker-4-tc2/source/Cargo.toml
[INFO] crate git repo https://github.com/mooreryan/bio_ballyhoo already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2023-04-20" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded bio-types v0.10.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5ff2268d62e97bff2cde7d5815dd6ed5b47097566f13b8d0ca110b04b60e07ed" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2023-04-20" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] dd0f8df1751e9a06a56293f173543a7b78b169bc77fb4982780cfb7647a353ac
[INFO] running `Command { std: "docker" "start" "-a" "dd0f8df1751e9a06a56293f173543a7b78b169bc77fb4982780cfb7647a353ac", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "dd0f8df1751e9a06a56293f173543a7b78b169bc77fb4982780cfb7647a353ac", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "dd0f8df1751e9a06a56293f173543a7b78b169bc77fb4982780cfb7647a353ac", kill_on_drop: false }`
[INFO] [stdout] dd0f8df1751e9a06a56293f173543a7b78b169bc77fb4982780cfb7647a353ac
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5ff2268d62e97bff2cde7d5815dd6ed5b47097566f13b8d0ca110b04b60e07ed" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2023-04-20" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 51254994f6f90ea622b40995908f8a6f1e294446443e4d68c0c81d1ff6396998
[INFO] running `Command { std: "docker" "start" "-a" "51254994f6f90ea622b40995908f8a6f1e294446443e4d68c0c81d1ff6396998", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.24
[INFO] [stderr]    Compiling unicode-xid v0.2.1
[INFO] [stderr]    Compiling syn v1.0.60
[INFO] [stderr]    Compiling libc v0.2.86
[INFO] [stderr]    Compiling autocfg v1.0.1
[INFO] [stderr]    Compiling serde_derive v1.0.123
[INFO] [stderr]    Compiling serde v1.0.123
[INFO] [stderr]     Checking cfg-if v1.0.0
[INFO] [stderr]    Compiling memchr v2.3.4
[INFO] [stderr]    Compiling version_check v0.9.2
[INFO] [stderr]    Compiling unicode-segmentation v1.7.1
[INFO] [stderr]     Checking lazy_static v1.4.0
[INFO] [stderr]    Compiling num-traits v0.2.14
[INFO] [stderr]     Checking ppv-lite86 v0.2.10
[INFO] [stderr]    Compiling getrandom v0.1.16
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]     Checking once_cell v1.5.2
[INFO] [stderr]    Compiling heck v0.3.2
[INFO] [stderr]     Checking unicode-width v0.1.8
[INFO] [stderr]     Checking thread_local v1.1.3
[INFO] [stderr]     Checking aho-corasick v0.7.15
[INFO] [stderr]    Compiling quote v1.0.9
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]     Checking byteorder v1.4.2
[INFO] [stderr]    Compiling bitflags v1.2.1
[INFO] [stderr]     Checking regex-syntax v0.6.22
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]     Checking rand_core v0.5.1
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]    Compiling indexmap v1.6.1
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling ryu v1.0.5
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling doc-comment v0.3.3
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking rand_chacha v0.2.2
[INFO] [stderr]     Checking regex-automata v0.1.9
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]     Checking textwrap v0.11.0
[INFO] [stderr]    Compiling getrandom v0.2.2
[INFO] [stderr]     Checking strsim v0.8.0
[INFO] [stderr]    Compiling ndarray v0.13.1
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]     Checking ansi_term v0.11.0
[INFO] [stderr]     Checking hashbrown v0.9.1
[INFO] [stderr]     Checking matrixmultiply v0.2.4
[INFO] [stderr]     Checking rand v0.7.3
[INFO] [stderr]     Checking csv-core v0.1.10
[INFO] [stderr]     Checking quick-error v1.2.3
[INFO] [stderr]     Checking array-macro v1.0.5
[INFO] [stderr]     Checking fixedbitset v0.2.0
[INFO] [stderr]     Checking itoa v0.4.7
[INFO] [stderr]    Compiling bio v0.32.0
[INFO] [stderr]     Checking regex v1.4.3
[INFO] [stderr]     Checking either v1.6.1
[INFO] [stderr]     Checking bit-vec v0.6.3
[INFO] [stderr]     Checking itertools v0.9.0
[INFO] [stderr]     Checking petgraph v0.5.1
[INFO] [stderr]     Checking bit-set v0.5.2
[INFO] [stderr]     Checking statrs v0.12.0
[INFO] [stderr]     Checking approx v0.3.2
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking ordered-float v1.1.1
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]     Checking terminal_size v0.1.16
[INFO] [stderr]     Checking triple_accel v0.3.4
[INFO] [stderr]     Checking fnv v1.0.7
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking bytecount v0.6.2
[INFO] [stderr]     Checking strum v0.18.0
[INFO] [stderr]     Checking console v0.14.0
[INFO] [stderr]     Checking rand_core v0.6.2
[INFO] [stderr]     Checking number_prefix v0.3.0
[INFO] [stderr]     Checking maplit v1.0.2
[INFO] [stderr]     Checking rand_chacha v0.3.0
[INFO] [stderr]     Checking indicatif v0.15.0
[INFO] [stderr]     Checking rand v0.8.3
[INFO] [stderr]    Compiling structopt-derive v0.4.14
[INFO] [stderr]    Compiling enum-map-derive v0.4.6
[INFO] [stderr]    Compiling snafu-derive v0.6.10
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling strum_macros v0.20.1
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]    Compiling strum_macros v0.18.0
[INFO] [stderr]     Checking enum-map v0.6.4
[INFO] [stderr]     Checking snafu v0.6.10
[INFO] [stderr]     Checking bio-types v0.10.0
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking bstr v0.2.15
[INFO] [stderr]     Checking multimap v0.8.2
[INFO] [stderr]     Checking clap v2.33.3
[INFO] [stderr]     Checking csv v1.1.5
[INFO] [stderr]     Checking structopt v0.3.21
[INFO] [stderr]  Documenting make_reads v0.1.0 (/opt/rustwide/workdir/make_reads)
[INFO] [stderr]  Documenting simple_headers v0.1.0 (/opt/rustwide/workdir/simple_headers)
[INFO] [stderr]  Documenting msa_pairwise v0.2.0 (/opt/rustwide/workdir/msa_pairwise_identity)
[INFO] [stderr]  Documenting derep v0.1.0 (/opt/rustwide/workdir/derep)
[INFO] [stdout] warning: this URL is not a hyperlink
[INFO] [stdout]   --> msa_pairwise_identity/src/lib.rs:71:9
[INFO] [stdout]    |
[INFO] [stdout] 71 | /// See https://drive5.com/usearch/manual7/id_threshold.html.
[INFO] [stdout]    |         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use an automatic link instead: `<https://drive5.com/usearch/manual7/id_threshold.html.>`
[INFO] [stdout]    |
[INFO] [stdout]    = note: bare URLs are not automatically turned into clickable links
[INFO] [stdout]    = note: `#[warn(rustdoc::bare_urls)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 12.34s
[INFO] running `Command { std: "docker" "inspect" "51254994f6f90ea622b40995908f8a6f1e294446443e4d68c0c81d1ff6396998", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "51254994f6f90ea622b40995908f8a6f1e294446443e4d68c0c81d1ff6396998", kill_on_drop: false }`
[INFO] [stdout] 51254994f6f90ea622b40995908f8a6f1e294446443e4d68c0c81d1ff6396998
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "RUSTC_BOOTSTRAP=1" "-e" "DOCS_RS=1" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5ff2268d62e97bff2cde7d5815dd6ed5b47097566f13b8d0ca110b04b60e07ed" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2023-04-20" "rustdoc" "--lib" "-Zrustdoc-map" "-Z" "unstable-options" "--config" "build.rustdocflags=[\"-Z\", \"unstable-options\", \"--document-private-items\"]" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] cd301acc60c7bf44876ec405feb7f94b2b54094e46751a58d46e99ad627c5d01
[INFO] running `Command { std: "docker" "start" "-a" "cd301acc60c7bf44876ec405feb7f94b2b54094e46751a58d46e99ad627c5d01", kill_on_drop: false }`
[INFO] [stderr] error: manifest path `/opt/rustwide/workdir/Cargo.toml` is a virtual manifest, but this command requires running against an actual package in this workspace
[INFO] running `Command { std: "docker" "inspect" "cd301acc60c7bf44876ec405feb7f94b2b54094e46751a58d46e99ad627c5d01", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "cd301acc60c7bf44876ec405feb7f94b2b54094e46751a58d46e99ad627c5d01", kill_on_drop: false }`
[INFO] [stdout] cd301acc60c7bf44876ec405feb7f94b2b54094e46751a58d46e99ad627c5d01
