[INFO] cloning repository https://github.com/informationsea/sequencetoolkit
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/informationsea/sequencetoolkit" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Finformationsea%2Fsequencetoolkit", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Finformationsea%2Fsequencetoolkit'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 549b9a9a8a4376783b8b688220dc06bddfcbe0fa
[INFO] documenting informationsea/sequencetoolkit against beta-2023-04-20 for beta-1.70-rustdoc-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Finformationsea%2Fsequencetoolkit" "/workspace/builds/worker-3-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-3-tc2/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/informationsea/sequencetoolkit on toolchain beta-2023-04-20
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2023-04-20" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/informationsea/sequencetoolkit
[INFO] finished tweaking git repo https://github.com/informationsea/sequencetoolkit
[INFO] tweaked toml for git repo https://github.com/informationsea/sequencetoolkit written to /workspace/builds/worker-3-tc2/source/Cargo.toml
[INFO] crate git repo https://github.com/informationsea/sequencetoolkit already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2023-04-20" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded vcf v0.6.1
[INFO] [stderr]   Downloaded enum-map v1.1.1
[INFO] [stderr]   Downloaded enum-map-derive v0.6.0
[INFO] [stderr]   Downloaded xz2 v0.1.7
[INFO] [stderr]   Downloaded autocompress v0.2.2
[INFO] [stderr]   Downloaded bio-types v0.13.0
[INFO] [stderr]   Downloaded bio v0.41.0
[INFO] [stderr]   Downloaded xlsxwriter v0.4.0
[INFO] [stderr]   Downloaded rust-htslib v0.39.5
[INFO] [stderr]   Downloaded libm v0.2.5
[INFO] [stderr]   Downloaded lzma-sys v0.1.19
[INFO] [stderr]   Downloaded libxlsxwriter-sys v1.1.4
[INFO] [stderr]   Downloaded curl-sys v0.4.56+curl-7.83.1
[INFO] [stderr]   Downloaded hts-sys v2.0.3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5ff2268d62e97bff2cde7d5815dd6ed5b47097566f13b8d0ca110b04b60e07ed" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2023-04-20" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 2fb22b6b9a7baf015af39ce2e587ba0a5d577e6136eea8c8ea724540c5aa31c2
[INFO] running `Command { std: "docker" "start" "-a" "2fb22b6b9a7baf015af39ce2e587ba0a5d577e6136eea8c8ea724540c5aa31c2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "2fb22b6b9a7baf015af39ce2e587ba0a5d577e6136eea8c8ea724540c5aa31c2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2fb22b6b9a7baf015af39ce2e587ba0a5d577e6136eea8c8ea724540c5aa31c2", kill_on_drop: false }`
[INFO] [stdout] 2fb22b6b9a7baf015af39ce2e587ba0a5d577e6136eea8c8ea724540c5aa31c2
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5ff2268d62e97bff2cde7d5815dd6ed5b47097566f13b8d0ca110b04b60e07ed" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2023-04-20" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 2fa7b8430902de34244da6a3051ea0ea08516cc3f7e827ed2cd564ea2eede81b
[INFO] running `Command { std: "docker" "start" "-a" "2fa7b8430902de34244da6a3051ea0ea08516cc3f7e827ed2cd564ea2eede81b", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.137
[INFO] [stderr]    Compiling proc-macro2 v1.0.47
[INFO] [stderr]    Compiling quote v1.0.21
[INFO] [stderr]    Compiling unicode-ident v1.0.5
[INFO] [stderr]    Compiling syn v1.0.103
[INFO] [stderr]    Compiling autocfg v1.1.0
[INFO] [stderr]    Compiling memchr v2.5.0
[INFO] [stderr]    Compiling serde_derive v1.0.147
[INFO] [stderr]    Compiling serde v1.0.147
[INFO] [stderr]    Compiling pkg-config v0.3.25
[INFO] [stderr]    Compiling libm v0.2.5
[INFO] [stderr]    Compiling log v0.4.17
[INFO] [stderr]    Compiling version_check v0.9.4
[INFO] [stderr]    Compiling glob v0.3.0
[INFO] [stderr]     Checking ppv-lite86 v0.2.16
[INFO] [stderr]    Compiling anyhow v1.0.66
[INFO] [stderr]     Checking bitflags v1.3.2
[INFO] [stderr]    Compiling rustversion v1.0.9
[INFO] [stderr]     Checking unicode-width v0.1.10
[INFO] [stderr]    Compiling thiserror v1.0.37
[INFO] [stderr]     Checking regex-syntax v0.6.27
[INFO] [stderr]     Checking textwrap v0.11.0
[INFO] [stderr]     Checking adler v1.0.2
[INFO] [stderr]    Compiling num-traits v0.2.15
[INFO] [stderr]    Compiling num-integer v0.1.45
[INFO] [stderr]    Compiling num-rational v0.4.1
[INFO] [stderr]     Checking strsim v0.8.0
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling typenum v1.15.0
[INFO] [stderr]     Checking ansi_term v0.12.1
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]     Checking ryu v1.0.11
[INFO] [stderr]     Checking matrixmultiply v0.3.2
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]     Checking miniz_oxide v0.5.4
[INFO] [stderr]    Compiling indexmap v1.9.1
[INFO] [stderr]     Checking aho-corasick v0.7.19
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling paste v1.0.9
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling crossbeam-utils v0.8.12
[INFO] [stderr]    Compiling zstd-safe v4.1.3+zstd.1.5.1
[INFO] [stderr]     Checking alloc-no-stdlib v2.0.4
[INFO] [stderr]    Compiling jobserver v0.1.25
[INFO] [stderr]     Checking getrandom v0.2.8
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]    Compiling crc32fast v1.3.2
[INFO] [stderr]    Compiling heck v0.4.0
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling cc v1.0.73
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]     Checking alloc-stdlib v0.2.2
[INFO] [stderr]     Checking regex-automata v0.1.10
[INFO] [stderr]     Checking either v1.8.0
[INFO] [stderr]    Compiling unicode-segmentation v1.10.0
[INFO] [stderr]    Compiling snap v1.0.5
[INFO] [stderr]    Compiling cfg-if v1.0.0
[INFO] [stderr]     Checking hashbrown v0.12.3
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking brotli-decompressor v2.3.2
[INFO] [stderr]    Compiling openssl-src v111.22.0+1.1.1q
[INFO] [stderr]    Compiling cmake v0.1.48
[INFO] [stderr]     Checking csv-core v0.1.10
[INFO] [stderr]    Compiling clang-sys v1.4.0
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]    Compiling heck v0.3.3
[INFO] [stderr]     Checking itoa v0.4.8
[INFO] [stderr]     Checking num-complex v0.4.2
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking bit-vec v0.6.3
[INFO] [stderr]     Checking fixedbitset v0.4.2
[INFO] [stderr]     Checking crossbeam-channel v0.5.6
[INFO] [stderr]     Checking ordered-float v1.1.1
[INFO] [stderr]     Checking regex v1.6.0
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking bit-set v0.5.3
[INFO] [stderr]     Checking flate2 v1.0.24
[INFO] [stderr]     Checking itertools v0.10.5
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]     Checking strum v0.23.0
[INFO] [stderr]     Checking triple_accel v0.4.0
[INFO] [stderr]     Checking bytecount v0.6.3
[INFO] [stderr]    Compiling lzma-sys v0.1.19
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling zstd-sys v1.6.2+zstd.1.5.1
[INFO] [stderr]    Compiling lz4-sys v1.9.4
[INFO] [stderr]     Checking simba v0.5.1
[INFO] [stderr]     Checking petgraph v0.6.2
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]     Checking ndarray v0.15.6
[INFO] [stderr]    Compiling libz-sys v1.1.8
[INFO] [stderr]     Checking brotli v3.3.4
[INFO] [stderr]    Compiling openssl-sys v0.9.77
[INFO] [stderr]    Compiling minimal-lexical v0.2.1
[INFO] [stderr]    Compiling libloading v0.7.3
[INFO] [stderr]    Compiling nom v7.1.1
[INFO] [stderr]    Compiling humantime v2.1.0
[INFO] [stderr]    Compiling termcolor v1.1.3
[INFO] [stderr]    Compiling bindgen v0.59.2
[INFO] [stderr]    Compiling which v4.3.0
[INFO] [stderr]    Compiling backtrace v0.3.66
[INFO] [stderr]    Compiling curl-sys v0.4.56+curl-7.83.1
[INFO] [stderr]    Compiling lazycell v1.3.0
[INFO] [stderr]    Compiling peeking_take_while v0.1.2
[INFO] [stderr]     Checking gimli v0.26.2
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]     Checking once_cell v1.15.0
[INFO] [stderr]    Compiling failure_derive v0.1.8
[INFO] [stderr]    Compiling rustc-hash v1.1.0
[INFO] [stderr]    Compiling lexical-core v0.7.6
[INFO] [stderr]    Compiling shlex v1.1.0
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling getrandom v0.1.16
[INFO] [stderr]    Compiling unicode-xid v0.2.4
[INFO] [stderr]     Checking tinyvec v1.6.0
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]     Checking object v0.29.0
[INFO] [stderr]    Compiling nom v5.1.2
[INFO] [stderr]     Checking rustc-demangle v0.1.21
[INFO] [stderr] error: could not compile `brotli` (lib)
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `rustc --crate-name brotli /opt/rustwide/cargo-home/registry/src/index.crates.io-6f17d22bba15001f/brotli-3.3.4/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata -C embed-bitcode=no -C debuginfo=2 --cfg 'feature="alloc-stdlib"' --cfg 'feature="default"' --cfg 'feature="ffi-api"' --cfg 'feature="std"' -C metadata=8ccbd1b04f891d7e -C extra-filename=-8ccbd1b04f891d7e --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern alloc_no_stdlib=/opt/rustwide/target/debug/deps/liballoc_no_stdlib-217d52b4fed68928.rmeta --extern alloc_stdlib=/opt/rustwide/target/debug/deps/liballoc_stdlib-e8560a65e383281a.rmeta --extern brotli_decompressor=/opt/rustwide/target/debug/deps/libbrotli_decompressor-11bbd0029f2fb306.rmeta --cap-lints allow --cap-lints=warn` (signal: 9, SIGKILL: kill)
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] running `Command { std: "docker" "inspect" "2fa7b8430902de34244da6a3051ea0ea08516cc3f7e827ed2cd564ea2eede81b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2fa7b8430902de34244da6a3051ea0ea08516cc3f7e827ed2cd564ea2eede81b", kill_on_drop: false }`
[INFO] [stdout] 2fa7b8430902de34244da6a3051ea0ea08516cc3f7e827ed2cd564ea2eede81b
