[INFO] fetching crate bioutils 0.2.4...
[INFO] documenting bioutils-0.2.4 against 1.69.0 for beta-1.70-rustdoc-1
[INFO] extracting crate bioutils 0.2.4 into /workspace/builds/worker-7-tc1/source
[INFO] validating manifest of crates.io crate bioutils 0.2.4 on toolchain 1.69.0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.69.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate bioutils 0.2.4
[INFO] finished tweaking crates.io crate bioutils 0.2.4
[INFO] tweaked toml for crates.io crate bioutils 0.2.4 written to /workspace/builds/worker-7-tc1/source/Cargo.toml
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" __CARGO_TEST_CHANNEL_OVERRIDE_DO_NOT_USE_THIS="nightly" "/workspace/cargo-home/bin/cargo" "+1.69.0" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }`
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.69.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5ff2268d62e97bff2cde7d5815dd6ed5b47097566f13b8d0ca110b04b60e07ed" "/opt/rustwide/cargo-home/bin/cargo" "+1.69.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 425e9239ac605879bc9e27c38f03c8b2bb2174745e01e8c26c903c096cbcb2ab
[INFO] running `Command { std: "docker" "start" "-a" "425e9239ac605879bc9e27c38f03c8b2bb2174745e01e8c26c903c096cbcb2ab", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "425e9239ac605879bc9e27c38f03c8b2bb2174745e01e8c26c903c096cbcb2ab", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "425e9239ac605879bc9e27c38f03c8b2bb2174745e01e8c26c903c096cbcb2ab", kill_on_drop: false }`
[INFO] [stdout] 425e9239ac605879bc9e27c38f03c8b2bb2174745e01e8c26c903c096cbcb2ab
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5ff2268d62e97bff2cde7d5815dd6ed5b47097566f13b8d0ca110b04b60e07ed" "/opt/rustwide/cargo-home/bin/cargo" "+1.69.0" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] de14b2e92e33818b00d00c60a301c5fd1d77fd275ca014084cfd11d068efc0a7
[INFO] running `Command { std: "docker" "start" "-a" "de14b2e92e33818b00d00c60a301c5fd1d77fd275ca014084cfd11d068efc0a7", kill_on_drop: false }`
[INFO] [stderr]    Compiling num-integer v0.1.45
[INFO] [stderr]    Compiling tokio v1.28.0
[INFO] [stderr]    Compiling futures-task v0.3.28
[INFO] [stderr]    Compiling winapi-build v0.1.1
[INFO] [stderr]    Compiling libz-sys v1.1.9
[INFO] [stderr]    Compiling futures-util v0.3.28
[INFO] [stderr]     Checking winapi v0.2.8
[INFO] [stderr]     Checking rayon-core v1.11.0
[INFO] [stderr]     Checking openssl v0.10.52
[INFO] [stderr]    Compiling curl-sys v0.4.61+curl-8.0.1
[INFO] [stderr]    Compiling miniz_oxide v0.4.4
[INFO] [stderr]    Compiling crossbeam-queue v0.3.8
[INFO] [stderr]     Checking memchr v0.1.11
[INFO] [stderr]     Checking getrandom v0.2.9
[INFO] [stderr]    Compiling cdivsufsort v2.0.0
[INFO] [stderr]    Compiling num-rational v0.3.2
[INFO] [stderr]     Checking weezl v0.1.7
[INFO] [stderr]     Checking aho-corasick v0.5.3
[INFO] [stderr]    Compiling kernel32-sys v0.2.2
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[INFO] [stderr]     Checking deflate v0.8.6
[INFO] [stderr]     Checking miniz_oxide v0.3.7
[INFO] [stderr]     Checking sacabase v2.0.0
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[INFO] [stderr]     Checking rayon v1.7.0
[INFO] [stderr]     Checking regex-syntax v0.3.9
[INFO] [stderr]    Compiling curl v0.4.44
[INFO] [stderr]     Checking thread_local v0.2.7
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking num v0.1.42
[INFO] [stderr]     Checking buf_redux v0.8.4
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[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]     Checking seq_io v0.3.1
[INFO] [stderr]     Checking memmem v0.1.1
[INFO] [stderr]     Checking infer v0.5.0
[INFO] [stderr]     Checking regex v0.1.80
[INFO] [stderr]     Checking flate2 v1.0.26
[INFO] [stderr]     Checking ftp v3.0.1
[INFO] [stderr]     Checking jpeg-decoder v0.1.22
[INFO] [stderr]     Checking native-tls v0.2.11
[INFO] [stderr]     Checking tiff v0.6.1
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[INFO] [stderr]     Checking tokio-util v0.7.8
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[INFO] [stderr]     Checking h2 v0.3.18
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[INFO] [stderr]     Checking hyper-tls v0.5.0
[INFO] [stderr]     Checking reqwest v0.11.17
[INFO] [stderr]  Documenting bioutils v0.2.4 (/opt/rustwide/workdir)
[INFO] [stdout] warning: Rust code block is empty
[INFO] [stdout]   --> src/files/http.rs:3:5
[INFO] [stdout]    |
[INFO] [stdout] 3  |   //! ```
[INFO] [stdout]    |  _____^
[INFO] [stdout] 4  | | //! // use std::path::Path;
[INFO] [stdout] 5  | | //! // use bioutils::files::http::bioutils_curl;
[INFO] [stdout] 6  | | //! // let fastq_ftp = "ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/009/SRR1700869/";
[INFO] [stdout] ...  |
[INFO] [stdout] 9  | | //! // bioutils_curl(fastq_ftp, fastq_gz, &out_directory);    
[INFO] [stdout] 10 | | //! ```
[INFO] [stdout]    | |_______^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(rustdoc::invalid_rust_codeblocks)]` on by default
[INFO] [stdout] help: mark blocks that do not contain Rust code as text
[INFO] [stdout]    |
[INFO] [stdout] 3  | //! ```text
[INFO] [stdout]    |        ++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: Rust code block is empty
[INFO] [stdout]  --> src/utils/count.rs:3:5
[INFO] [stdout]   |
[INFO] [stdout] 3 |   //! ```
[INFO] [stdout]   |  _____^
[INFO] [stdout] 4 | | //! // Counts the number of elements greater, less, and equal to the given value in the item
[INFO] [stdout] 5 | | //! // Use this to count the number of elements that pass (greater than or equal to) a threshold value
[INFO] [stdout] 6 | | //! 
[INFO] [stdout] 7 | | //! ```
[INFO] [stdout]   | |_______^
[INFO] [stdout]   |
[INFO] [stdout] help: mark blocks that do not contain Rust code as text
[INFO] [stdout]   |
[INFO] [stdout] 3 | //! ```text
[INFO] [stdout]   |        ++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: Rust code block is empty
[INFO] [stdout]   --> src/references/ftp.rs:6:5
[INFO] [stdout]    |
[INFO] [stdout] 6  |   //! ```
[INFO] [stdout]    |  _____^
[INFO] [stdout] 7  | | //! // use std::path::Path;
[INFO] [stdout] 8  | | //! // let path = Path::new("./");
[INFO] [stdout] 9  | | //! // Downloads the latest file versions
[INFO] [stdout] 10 | | //! // download_grch38_primary_assembly_genome_fa_gz(&path);
[INFO] [stdout] 11 | | //! // download_gencode_vxx_primary_assembly_annotation_gtf_gz(&path);
[INFO] [stdout] 12 | | //! ```
[INFO] [stdout]    | |_______^
[INFO] [stdout]    |
[INFO] [stdout] help: mark blocks that do not contain Rust code as text
[INFO] [stdout]    |
[INFO] [stdout] 6  | //! ```text
[INFO] [stdout]    |        ++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 3 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 9.53s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: buf_redux v0.8.4
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
[INFO] running `Command { std: "docker" "inspect" "de14b2e92e33818b00d00c60a301c5fd1d77fd275ca014084cfd11d068efc0a7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "de14b2e92e33818b00d00c60a301c5fd1d77fd275ca014084cfd11d068efc0a7", kill_on_drop: false }`
[INFO] [stdout] de14b2e92e33818b00d00c60a301c5fd1d77fd275ca014084cfd11d068efc0a7
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "DOCS_RS=1" "-e" "RUSTC_BOOTSTRAP=1" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5ff2268d62e97bff2cde7d5815dd6ed5b47097566f13b8d0ca110b04b60e07ed" "/opt/rustwide/cargo-home/bin/cargo" "+1.69.0" "rustdoc" "--lib" "-Zrustdoc-map" "-Z" "unstable-options" "--config" "build.rustdocflags=[\"-Z\", \"unstable-options\", \"--document-private-items\"]" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] eef2a14edcf0efb7b73689a97ef8e33357d43ece888e98e85da500f35382504a
[INFO] running `Command { std: "docker" "start" "-a" "eef2a14edcf0efb7b73689a97ef8e33357d43ece888e98e85da500f35382504a", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Documenting bioutils v0.2.4 (/opt/rustwide/workdir)
[INFO] [stdout] warning: Rust code block is empty
[INFO] [stdout]   --> src/files/http.rs:3:5
[INFO] [stdout]    |
[INFO] [stdout] 3  |   //! ```
[INFO] [stdout]    |  _____^
[INFO] [stdout] 4  | | //! // use std::path::Path;
[INFO] [stdout] 5  | | //! // use bioutils::files::http::bioutils_curl;
[INFO] [stdout] 6  | | //! // let fastq_ftp = "ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR170/009/SRR1700869/";
[INFO] [stdout] ...  |
[INFO] [stdout] 9  | | //! // bioutils_curl(fastq_ftp, fastq_gz, &out_directory);    
[INFO] [stdout] 10 | | //! ```
[INFO] [stdout]    | |_______^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(rustdoc::invalid_rust_codeblocks)]` on by default
[INFO] [stdout] help: mark blocks that do not contain Rust code as text
[INFO] [stdout]    |
[INFO] [stdout] 3  | //! ```text
[INFO] [stdout]    |        ++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: Rust code block is empty
[INFO] [stdout]  --> src/utils/count.rs:3:5
[INFO] [stdout]   |
[INFO] [stdout] 3 |   //! ```
[INFO] [stdout]   |  _____^
[INFO] [stdout] 4 | | //! // Counts the number of elements greater, less, and equal to the given value in the item
[INFO] [stdout] 5 | | //! // Use this to count the number of elements that pass (greater than or equal to) a threshold value
[INFO] [stdout] 6 | | //! 
[INFO] [stdout] 7 | | //! ```
[INFO] [stdout]   | |_______^
[INFO] [stdout]   |
[INFO] [stdout] help: mark blocks that do not contain Rust code as text
[INFO] [stdout]   |
[INFO] [stdout] 3 | //! ```text
[INFO] [stdout]   |        ++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: Rust code block is empty
[INFO] [stdout]   --> src/references/ftp.rs:6:5
[INFO] [stdout]    |
[INFO] [stdout] 6  |   //! ```
[INFO] [stdout]    |  _____^
[INFO] [stdout] 7  | | //! // use std::path::Path;
[INFO] [stdout] 8  | | //! // let path = Path::new("./");
[INFO] [stdout] 9  | | //! // Downloads the latest file versions
[INFO] [stdout] 10 | | //! // download_grch38_primary_assembly_genome_fa_gz(&path);
[INFO] [stdout] 11 | | //! // download_gencode_vxx_primary_assembly_annotation_gtf_gz(&path);
[INFO] [stdout] 12 | | //! ```
[INFO] [stdout]    | |_______^
[INFO] [stdout]    |
[INFO] [stdout] help: mark blocks that do not contain Rust code as text
[INFO] [stdout]    |
[INFO] [stdout] 6  | //! ```text
[INFO] [stdout]    |        ++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 3 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1.79s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: buf_redux v0.8.4
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
[INFO] running `Command { std: "docker" "inspect" "eef2a14edcf0efb7b73689a97ef8e33357d43ece888e98e85da500f35382504a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "eef2a14edcf0efb7b73689a97ef8e33357d43ece888e98e85da500f35382504a", kill_on_drop: false }`
[INFO] [stdout] eef2a14edcf0efb7b73689a97ef8e33357d43ece888e98e85da500f35382504a
