[INFO] cloning repository https://github.com/NickRoz1/gbam
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/NickRoz1/gbam" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FNickRoz1%2Fgbam", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FNickRoz1%2Fgbam'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 1c050037cdc0689e4aef97464f2a3f1471b3bf09
[INFO] documenting NickRoz1/gbam against 1.69.0 for beta-1.70-rustdoc-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FNickRoz1%2Fgbam" "/workspace/builds/worker-1-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc1/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/NickRoz1/gbam on toolchain 1.69.0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.69.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/NickRoz1/gbam
[INFO] finished tweaking git repo https://github.com/NickRoz1/gbam
[INFO] tweaked toml for git repo https://github.com/NickRoz1/gbam written to /workspace/builds/worker-1-tc1/source/Cargo.toml
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" __CARGO_TEST_CHANNEL_OVERRIDE_DO_NOT_USE_THIS="nightly" "/workspace/cargo-home/bin/cargo" "+1.69.0" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }`
[INFO] [stderr]     Updating git repository `https://github.com/NickRoz1/bam_parallel`
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.69.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded lz4_flex v0.8.2
[INFO] [stderr]   Downloaded lzzzz v1.0.4
[INFO] [stderr]   Downloaded rust-htslib v0.39.5
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5ff2268d62e97bff2cde7d5815dd6ed5b47097566f13b8d0ca110b04b60e07ed" "/opt/rustwide/cargo-home/bin/cargo" "+1.69.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] b4364a4675d265e1e4eca47d6b66ff015fa325ff1554d8993920545844e50c22
[INFO] running `Command { std: "docker" "start" "-a" "b4364a4675d265e1e4eca47d6b66ff015fa325ff1554d8993920545844e50c22", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "b4364a4675d265e1e4eca47d6b66ff015fa325ff1554d8993920545844e50c22", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b4364a4675d265e1e4eca47d6b66ff015fa325ff1554d8993920545844e50c22", kill_on_drop: false }`
[INFO] [stdout] b4364a4675d265e1e4eca47d6b66ff015fa325ff1554d8993920545844e50c22
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5ff2268d62e97bff2cde7d5815dd6ed5b47097566f13b8d0ca110b04b60e07ed" "/opt/rustwide/cargo-home/bin/cargo" "+1.69.0" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 5e34cfee01b7a96c5b14ad87487e2a836e75e2bf2a66428a5f85105f87ac12a5
[INFO] running `Command { std: "docker" "start" "-a" "5e34cfee01b7a96c5b14ad87487e2a836e75e2bf2a66428a5f85105f87ac12a5", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.142
[INFO] [stderr]    Compiling proc-macro2 v1.0.56
[INFO] [stderr]    Compiling unicode-ident v1.0.8
[INFO] [stderr]    Compiling quote v1.0.26
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling crossbeam-utils v0.8.15
[INFO] [stderr]    Compiling memchr v2.5.0
[INFO] [stderr]    Compiling pkg-config v0.3.26
[INFO] [stderr]     Checking tinyvec_macros v0.1.1
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling serde_derive v1.0.160
[INFO] [stderr]    Compiling memoffset v0.8.0
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.14
[INFO] [stderr]    Compiling lock_api v0.4.9
[INFO] [stderr]    Compiling rustversion v1.0.12
[INFO] [stderr]     Checking tinyvec v1.6.0
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling crc32fast v1.3.2
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling futures-core v0.3.28
[INFO] [stderr]    Compiling glob v0.3.1
[INFO] [stderr]    Compiling thiserror v1.0.40
[INFO] [stderr]    Compiling rayon-core v1.11.0
[INFO] [stderr]    Compiling serde v1.0.160
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]     Checking crossbeam-channel v0.5.8
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking either v1.8.1
[INFO] [stderr]     Checking unicode-bidi v0.3.13
[INFO] [stderr]    Compiling crossbeam-queue v0.3.8
[INFO] [stderr]     Checking aho-corasick v1.0.1
[INFO] [stderr]    Compiling heck v0.4.1
[INFO] [stderr]     Checking unicode-normalization v0.1.22
[INFO] [stderr]     Checking crossbeam-deque v0.8.3
[INFO] [stderr]     Checking regex-syntax v0.7.1
[INFO] [stderr]     Checking percent-encoding v2.2.0
[INFO] [stderr]     Checking twox-hash v1.6.3
[INFO] [stderr]    Compiling syn v2.0.15
[INFO] [stderr]     Checking miniz_oxide v0.7.1
[INFO] [stderr]     Checking form_urlencoded v1.1.0
[INFO] [stderr]     Checking spin v0.9.8
[INFO] [stderr]     Checking num_cpus v1.15.0
[INFO] [stderr]     Checking getrandom v0.2.9
[INFO] [stderr]    Compiling jobserver v0.1.26
[INFO] [stderr]     Checking rand v0.4.6
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]     Checking futures-sink v0.3.28
[INFO] [stderr]    Compiling serde_json v1.0.96
[INFO] [stderr]     Checking nanorand v0.7.0
[INFO] [stderr]     Checking idna v0.3.0
[INFO] [stderr]     Checking remove_dir_all v0.5.3
[INFO] [stderr]     Checking lz4_flex v0.8.2
[INFO] [stderr]    Compiling cc v1.0.79
[INFO] [stderr]     Checking num_cpus v0.2.13
[INFO] [stderr]     Checking flate2 v1.0.26
[INFO] [stderr]    Compiling unicode-segmentation v1.10.1
[INFO] [stderr]     Checking itoa v1.0.6
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]     Checking ryu v1.0.13
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking unicode-width v0.1.10
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking crossbeam v0.8.2
[INFO] [stderr]     Checking url v2.3.1
[INFO] [stderr]     Checking tempdir v0.3.7
[INFO] [stderr]     Checking memmap2 v0.3.1
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]     Checking rayon v1.7.0
[INFO] [stderr]     Checking itertools v0.10.5
[INFO] [stderr]     Checking textwrap v0.11.0
[INFO] [stderr]     Checking bitflags v2.2.1
[INFO] [stderr]    Compiling cmake v0.1.50
[INFO] [stderr]     Checking clap v2.34.0
[INFO] [stderr]    Compiling heck v0.3.3
[INFO] [stderr]    Compiling hts-sys v2.0.3
[INFO] [stderr]    Compiling lzzzz v1.0.4
[INFO] [stderr]    Compiling libz-sys v1.1.9
[INFO] [stderr]     Checking regex v1.8.1
[INFO] [stderr]    Compiling thiserror-impl v1.0.40
[INFO] [stderr]    Compiling pin-project-internal v1.0.12
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling strum_macros v0.24.3
[INFO] [stderr]    Compiling structopt-derive v0.4.18
[INFO] [stderr]     Checking pin-project v1.0.12
[INFO] [stderr]     Checking flume v0.10.14
[INFO] [stderr]     Checking structopt v0.3.26
[INFO] [stderr]     Checking bio-types v0.13.0
[INFO] [stderr]     Checking rust-htslib v0.39.5
[INFO] [stderr]     Checking bam_tools v0.1.0 (https://github.com/NickRoz1/bam_parallel#c7ee6acb)
[INFO] [stderr]     Checking gbam_tools v0.1.0 (/opt/rustwide/workdir/gbam_tools)
[INFO] [stderr]  Documenting gbam_tools v0.1.0 (/opt/rustwide/workdir/gbam_tools)
[INFO] [stderr]  Documenting gbam_binary v0.1.0 (/opt/rustwide/workdir/gbam_binary)
[INFO] [stdout] warning: unresolved link to `l_read_name`
[INFO] [stdout]    --> gbam_tools/src/reader/record.rs:152:47
[INFO] [stdout]     |
[INFO] [stdout] 152 |     /// read name                        char[l_read_name]
[INFO] [stdout]     |                                               ^^^^^^^^^^^ no item named `l_read_name` in scope
[INFO] [stdout]     |
[INFO] [stdout]     = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]`
[INFO] [stdout]     = note: `#[warn(rustdoc::broken_intra_doc_links)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `n_cigar_op`
[INFO] [stdout]    --> gbam_tools/src/reader/record.rs:153:51
[INFO] [stdout]     |
[INFO] [stdout] 153 |     /// cigar                            uint32_t[n_cigar_op]
[INFO] [stdout]     |                                                   ^^^^^^^^^^ no item named `n_cigar_op` in scope
[INFO] [stdout]     |
[INFO] [stdout]     = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `l_seq`
[INFO] [stdout]    --> gbam_tools/src/reader/record.rs:155:47
[INFO] [stdout]     |
[INFO] [stdout] 155 |     /// qual                             char[l_seq]
[INFO] [stdout]     |                                               ^^^^^ no item named `l_seq` in scope
[INFO] [stdout]     |
[INFO] [stdout]     = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `2`
[INFO] [stdout]    --> gbam_tools/src/reader/record.rs:157:47
[INFO] [stdout]     |
[INFO] [stdout] 157 |     /// tag                              char[2]
[INFO] [stdout]     |                                               ^ no item named `2` in scope
[INFO] [stdout]     |
[INFO] [stdout]     = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: this URL is not a hyperlink
[INFO] [stdout]  --> gbam_tools/src/utils/bed.rs:8:13
[INFO] [stdout]   |
[INFO] [stdout] 8 | /// Source: https://github.com/zaeleus/noodles/blob/90e70874eaa6dd41ac8339933d6dd95bd98080c2/noodles-tabix/examples/tabix_write.rs#L24
[INFO] [stdout]   |             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use an automatic link instead: `<https://github.com/zaeleus/noodles/blob/90e70874eaa6dd41ac8339933d6dd95bd98080c2/noodles-tabix/examples/tabix_write.rs#L24>`
[INFO] [stdout]   |
[INFO] [stdout]   = note: bare URLs are not automatically turned into clickable links
[INFO] [stdout]   = note: `#[warn(rustdoc::bare_urls)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: this URL is not a hyperlink
[INFO] [stdout]    --> gbam_tools/src/meta.rs:218:5
[INFO] [stdout]     |
[INFO] [stdout] 218 | /// https://serde.rs/deserialize-map.html
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use an automatic link instead: `<https://serde.rs/deserialize-map.html>`
[INFO] [stdout]     |
[INFO] [stdout]     = note: bare URLs are not automatically turned into clickable links
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 6 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 10.92s
[INFO] running `Command { std: "docker" "inspect" "5e34cfee01b7a96c5b14ad87487e2a836e75e2bf2a66428a5f85105f87ac12a5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5e34cfee01b7a96c5b14ad87487e2a836e75e2bf2a66428a5f85105f87ac12a5", kill_on_drop: false }`
[INFO] [stdout] 5e34cfee01b7a96c5b14ad87487e2a836e75e2bf2a66428a5f85105f87ac12a5
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "DOCS_RS=1" "-e" "RUSTC_BOOTSTRAP=1" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5ff2268d62e97bff2cde7d5815dd6ed5b47097566f13b8d0ca110b04b60e07ed" "/opt/rustwide/cargo-home/bin/cargo" "+1.69.0" "rustdoc" "--lib" "-Zrustdoc-map" "-Z" "unstable-options" "--config" "build.rustdocflags=[\"-Z\", \"unstable-options\", \"--document-private-items\"]" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 4ff64db329df951f79bf1f85d988b975e87f21827856b7996b283ffd03f8a2e1
[INFO] running `Command { std: "docker" "start" "-a" "4ff64db329df951f79bf1f85d988b975e87f21827856b7996b283ffd03f8a2e1", kill_on_drop: false }`
[INFO] [stderr] error: manifest path `/opt/rustwide/workdir/Cargo.toml` is a virtual manifest, but this command requires running against an actual package in this workspace
[INFO] running `Command { std: "docker" "inspect" "4ff64db329df951f79bf1f85d988b975e87f21827856b7996b283ffd03f8a2e1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4ff64db329df951f79bf1f85d988b975e87f21827856b7996b283ffd03f8a2e1", kill_on_drop: false }`
[INFO] [stdout] 4ff64db329df951f79bf1f85d988b975e87f21827856b7996b283ffd03f8a2e1
