[INFO] fetching crate bio-jtools 0.2.0...
[INFO] testing bio-jtools-0.2.0 against 1.69.0 for beta-1.70-1
[INFO] extracting crate bio-jtools 0.2.0 into /workspace/builds/worker-1-tc1/source
[INFO] validating manifest of crates.io crate bio-jtools 0.2.0 on toolchain 1.69.0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.69.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate bio-jtools 0.2.0
[INFO] finished tweaking crates.io crate bio-jtools 0.2.0
[INFO] tweaked toml for crates.io crate bio-jtools 0.2.0 written to /workspace/builds/worker-1-tc1/source/Cargo.toml
[INFO] crate crates.io crate bio-jtools 0.2.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.69.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5ff2268d62e97bff2cde7d5815dd6ed5b47097566f13b8d0ca110b04b60e07ed" "/opt/rustwide/cargo-home/bin/cargo" "+1.69.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] ae89b2ac1fad499f3aeab46878dcb8164c223e9e258be05e005a507c960e9e7f
[INFO] running `Command { std: "docker" "start" "-a" "ae89b2ac1fad499f3aeab46878dcb8164c223e9e258be05e005a507c960e9e7f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "ae89b2ac1fad499f3aeab46878dcb8164c223e9e258be05e005a507c960e9e7f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ae89b2ac1fad499f3aeab46878dcb8164c223e9e258be05e005a507c960e9e7f", kill_on_drop: false }`
[INFO] [stdout] ae89b2ac1fad499f3aeab46878dcb8164c223e9e258be05e005a507c960e9e7f
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5ff2268d62e97bff2cde7d5815dd6ed5b47097566f13b8d0ca110b04b60e07ed" "/opt/rustwide/cargo-home/bin/cargo" "+1.69.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 0c488005db4325a708ac5c7bf9d7f971dd3e0150df1edaddd9e8722cba48cc95
[INFO] running `Command { std: "docker" "start" "-a" "0c488005db4325a708ac5c7bf9d7f971dd3e0150df1edaddd9e8722cba48cc95", kill_on_drop: false }`
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[INFO] [stderr]    Compiling bio-jtools v0.2.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: function `filter` is never used
[INFO] [stdout]   --> src/align/filter.rs:50:8
[INFO] [stdout]    |
[INFO] [stdout] 50 | pub fn filter<T: RecordReader, S: RecordWriter>(
[INFO] [stdout]    |        ^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `genome_depth` and `genome_support` are never read
[INFO] [stdout]    --> src/align/info_stats.rs:130:5
[INFO] [stdout]     |
[INFO] [stdout] 110 | pub struct SamBamCramStats {
[INFO] [stdout]     |            --------------- fields in this struct
[INFO] [stdout] ...
[INFO] [stdout] 130 |     genome_depth: (),
[INFO] [stdout]     |     ^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 133 |     genome_support: (),
[INFO] [stdout]     |     ^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `SamBamCramStats` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variant `Cram` is never constructed
[INFO] [stdout]  --> src/align/reader.rs:9:5
[INFO] [stdout]   |
[INFO] [stdout] 6 | pub enum SamBamCramReader<R1: BufRead, R2: Read> {
[INFO] [stdout]   |          ---------------- variant in this enum
[INFO] [stdout] ...
[INFO] [stdout] 9 |     Cram,
[INFO] [stdout]   |     ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `RESERVED_DIRNAMES` is never used
[INFO] [stdout]   --> src/data/mod.rs:18:7
[INFO] [stdout]    |
[INFO] [stdout] 18 | const RESERVED_DIRNAMES: [&'static str; 7] = [
[INFO] [stdout]    |       ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `RESERVED_FILENAMES` is never used
[INFO] [stdout]   --> src/data/mod.rs:21:7
[INFO] [stdout]    |
[INFO] [stdout] 21 | const RESERVED_FILENAMES: [&'static str; 5] = [
[INFO] [stdout]    |       ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: multiple fields are never read
[INFO] [stdout]   --> src/data/mod.rs:31:5
[INFO] [stdout]    |
[INFO] [stdout] 30 | struct SeqDir {
[INFO] [stdout]    |        ------ fields in this struct
[INFO] [stdout] 31 |     path: PathBuf,
[INFO] [stdout]    |     ^^^^
[INFO] [stdout] 32 |     date: Date,
[INFO] [stdout]    |     ^^^^
[INFO] [stdout] 33 |     instrument: String,
[INFO] [stdout]    |     ^^^^^^^^^^
[INFO] [stdout] 34 |     run: u16,
[INFO] [stdout]    |     ^^^
[INFO] [stdout] 35 |     position: char,
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout] 36 |     flowcell: String,
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout] 37 |     description: String,
[INFO] [stdout]    |     ^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `SeqDir` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `create_reserved_file` is never used
[INFO] [stdout]    --> src/data/mod.rs:248:4
[INFO] [stdout]     |
[INFO] [stdout] 248 | fn create_reserved_file(seq: &SeqDir, file: &str) {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `create_reserved_dir` is never used
[INFO] [stdout]    --> src/data/mod.rs:258:4
[INFO] [stdout]     |
[INFO] [stdout] 258 | fn create_reserved_dir(p: PathBuf) {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `create_readme` is never used
[INFO] [stdout]    --> src/data/mod.rs:263:4
[INFO] [stdout]     |
[INFO] [stdout] 263 | fn create_readme(seq: &SeqDir) {
[INFO] [stdout]     |    ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `create_cluster_yaml` is never used
[INFO] [stdout]    --> src/data/mod.rs:284:4
[INFO] [stdout]     |
[INFO] [stdout] 284 | fn create_cluster_yaml(seq: &SeqDir) {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `create_snakefile` is never used
[INFO] [stdout]    --> src/data/mod.rs:302:4
[INFO] [stdout]     |
[INFO] [stdout] 302 | fn create_snakefile(seq: &SeqDir) {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `update_sample` is never used
[INFO] [stdout]    --> src/data/mod.rs:407:4
[INFO] [stdout]     |
[INFO] [stdout] 407 | fn update_sample(s: &mut SeqSample, mate: String, lane: String) {
[INFO] [stdout]     |    ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `create_config` is never used
[INFO] [stdout]    --> src/data/mod.rs:416:4
[INFO] [stdout]     |
[INFO] [stdout] 416 | fn create_config(sd: &SeqDir, dryrun: bool) {
[INFO] [stdout]     |    ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `mv_to_dir` is never used
[INFO] [stdout]    --> src/data/mod.rs:505:4
[INFO] [stdout]     |
[INFO] [stdout] 505 | fn mv_to_dir(file: &Path, dir: &Path) {
[INFO] [stdout]     |    ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `organize` is never used
[INFO] [stdout]    --> src/data/mod.rs:510:8
[INFO] [stdout]     |
[INFO] [stdout] 510 | pub fn organize(indir: &Path, dryrun: bool, verbose: bool) {
[INFO] [stdout]     |        ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated function `new` is never used
[INFO] [stdout]   --> src/data/mod.rs:42:12
[INFO] [stdout]    |
[INFO] [stdout] 42 |     pub fn new(path: &Path) -> SeqDir {
[INFO] [stdout]    |            ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `path` is never used
[INFO] [stdout]    --> src/data/mod.rs:104:12
[INFO] [stdout]     |
[INFO] [stdout] 104 |     pub fn path(&self) -> &Path {
[INFO] [stdout]     |            ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `date` is never used
[INFO] [stdout]    --> src/data/mod.rs:109:12
[INFO] [stdout]     |
[INFO] [stdout] 109 |     pub fn date(&self) -> Date {
[INFO] [stdout]     |            ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `instrument` is never used
[INFO] [stdout]    --> src/data/mod.rs:114:12
[INFO] [stdout]     |
[INFO] [stdout] 114 |     pub fn instrument(&self) -> &str {
[INFO] [stdout]     |            ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `run` is never used
[INFO] [stdout]    --> src/data/mod.rs:119:12
[INFO] [stdout]     |
[INFO] [stdout] 119 |     pub fn run(&self) -> u16 {
[INFO] [stdout]     |            ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `position` is never used
[INFO] [stdout]    --> src/data/mod.rs:124:12
[INFO] [stdout]     |
[INFO] [stdout] 124 |     pub fn position(&self) -> char {
[INFO] [stdout]     |            ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `flowcell` is never used
[INFO] [stdout]    --> src/data/mod.rs:129:12
[INFO] [stdout]     |
[INFO] [stdout] 129 |     pub fn flowcell(&self) -> &str {
[INFO] [stdout]     |            ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `description` is never used
[INFO] [stdout]    --> src/data/mod.rs:134:12
[INFO] [stdout]     |
[INFO] [stdout] 134 |     pub fn description(&self) -> &str {
[INFO] [stdout]     |            ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `create_reserved_files` is never used
[INFO] [stdout]    --> src/data/mod.rs:139:12
[INFO] [stdout]     |
[INFO] [stdout] 139 |     pub fn create_reserved_files(&self, verbose: bool, dryrun: bool) {
[INFO] [stdout]     |            ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `create_reserved_dirs` is never used
[INFO] [stdout]    --> src/data/mod.rs:158:12
[INFO] [stdout]     |
[INFO] [stdout] 158 |     pub fn create_reserved_dirs(&self, verbose: bool, dryrun: bool) {
[INFO] [stdout]     |            ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `relocate_hts_files` is never used
[INFO] [stdout]    --> src/data/mod.rs:177:12
[INFO] [stdout]     |
[INFO] [stdout] 177 |     pub fn relocate_hts_files(&self, verbose: bool, dryrun: bool) {
[INFO] [stdout]     |            ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: multiple fields are never read
[INFO] [stdout]   --> src/record/header.rs:45:5
[INFO] [stdout]    |
[INFO] [stdout] 43 | pub(crate) struct CasavaV1_8Name {
[INFO] [stdout]    |                   -------------- fields in this struct
[INFO] [stdout] 44 |     /// Instrument name
[INFO] [stdout] 45 |     instrument: Option<String>,
[INFO] [stdout]    |     ^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 48 |     lane: Option<u8>,
[INFO] [stdout]    |     ^^^^
[INFO] [stdout] ...
[INFO] [stdout] 51 |     tile: Option<u8>,
[INFO] [stdout]    |     ^^^^
[INFO] [stdout] ...
[INFO] [stdout] 54 |     x: Option<u8>,
[INFO] [stdout]    |     ^
[INFO] [stdout] ...
[INFO] [stdout] 57 |     y: Option<u8>,
[INFO] [stdout]    |     ^
[INFO] [stdout] ...
[INFO] [stdout] 61 |     sample_index: Option<u8>,
[INFO] [stdout]    |     ^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 64 |     pair_member: Option<u8>,
[INFO] [stdout]    |     ^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `CasavaV1_8Name` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `id`, `description`, and `length` are never read
[INFO] [stdout]   --> src/record/header.rs:71:5
[INFO] [stdout]    |
[INFO] [stdout] 69 | pub(crate) struct SraName<'id> {
[INFO] [stdout]    |                   ------- fields in this struct
[INFO] [stdout] 70 |     /// Clobbered record ID
[INFO] [stdout] 71 |     id: Cow<'id, [u8]>,
[INFO] [stdout]    |     ^^
[INFO] [stdout] ...
[INFO] [stdout] 74 |     description: Cow<'id, [u8]>,
[INFO] [stdout]    |     ^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 77 |     length: Cow<'id, [u8]>,
[INFO] [stdout]    |     ^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `SraName` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 28 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 25.09s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: buf_redux v0.8.4
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
[INFO] running `Command { std: "docker" "inspect" "0c488005db4325a708ac5c7bf9d7f971dd3e0150df1edaddd9e8722cba48cc95", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "0c488005db4325a708ac5c7bf9d7f971dd3e0150df1edaddd9e8722cba48cc95", kill_on_drop: false }`
[INFO] [stdout] 0c488005db4325a708ac5c7bf9d7f971dd3e0150df1edaddd9e8722cba48cc95
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5ff2268d62e97bff2cde7d5815dd6ed5b47097566f13b8d0ca110b04b60e07ed" "/opt/rustwide/cargo-home/bin/cargo" "+1.69.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] a2178917e921161ad09568c5dffd80e65cf12a39fe44d3aa70956b4d3c17ff99
[INFO] running `Command { std: "docker" "start" "-a" "a2178917e921161ad09568c5dffd80e65cf12a39fe44d3aa70956b4d3c17ff99", kill_on_drop: false }`
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[INFO] [stdout] warning: function `filter` is never used
[INFO] [stdout]   --> src/align/filter.rs:50:8
[INFO] [stdout]    |
[INFO] [stdout] 50 | pub fn filter<T: RecordReader, S: RecordWriter>(
[INFO] [stdout]    |        ^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `genome_depth` and `genome_support` are never read
[INFO] [stdout]    --> src/align/info_stats.rs:130:5
[INFO] [stdout]     |
[INFO] [stdout] 110 | pub struct SamBamCramStats {
[INFO] [stdout]     |            --------------- fields in this struct
[INFO] [stdout] ...
[INFO] [stdout] 130 |     genome_depth: (),
[INFO] [stdout]     |     ^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 133 |     genome_support: (),
[INFO] [stdout]     |     ^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `SamBamCramStats` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variant `Cram` is never constructed
[INFO] [stdout]  --> src/align/reader.rs:9:5
[INFO] [stdout]   |
[INFO] [stdout] 6 | pub enum SamBamCramReader<R1: BufRead, R2: Read> {
[INFO] [stdout]   |          ---------------- variant in this enum
[INFO] [stdout] ...
[INFO] [stdout] 9 |     Cram,
[INFO] [stdout]   |     ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `RESERVED_DIRNAMES` is never used
[INFO] [stdout]   --> src/data/mod.rs:18:7
[INFO] [stdout]    |
[INFO] [stdout] 18 | const RESERVED_DIRNAMES: [&'static str; 7] = [
[INFO] [stdout]    |       ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `RESERVED_FILENAMES` is never used
[INFO] [stdout]   --> src/data/mod.rs:21:7
[INFO] [stdout]    |
[INFO] [stdout] 21 | const RESERVED_FILENAMES: [&'static str; 5] = [
[INFO] [stdout]    |       ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: multiple fields are never read
[INFO] [stdout]   --> src/data/mod.rs:31:5
[INFO] [stdout]    |
[INFO] [stdout] 30 | struct SeqDir {
[INFO] [stdout]    |        ------ fields in this struct
[INFO] [stdout] 31 |     path: PathBuf,
[INFO] [stdout]    |     ^^^^
[INFO] [stdout] 32 |     date: Date,
[INFO] [stdout]    |     ^^^^
[INFO] [stdout] 33 |     instrument: String,
[INFO] [stdout]    |     ^^^^^^^^^^
[INFO] [stdout] 34 |     run: u16,
[INFO] [stdout]    |     ^^^
[INFO] [stdout] 35 |     position: char,
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout] 36 |     flowcell: String,
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout] 37 |     description: String,
[INFO] [stdout]    |     ^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `SeqDir` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `create_reserved_file` is never used
[INFO] [stdout]    --> src/data/mod.rs:248:4
[INFO] [stdout]     |
[INFO] [stdout] 248 | fn create_reserved_file(seq: &SeqDir, file: &str) {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `create_reserved_dir` is never used
[INFO] [stdout]    --> src/data/mod.rs:258:4
[INFO] [stdout]     |
[INFO] [stdout] 258 | fn create_reserved_dir(p: PathBuf) {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `create_readme` is never used
[INFO] [stdout]    --> src/data/mod.rs:263:4
[INFO] [stdout]     |
[INFO] [stdout] 263 | fn create_readme(seq: &SeqDir) {
[INFO] [stdout]     |    ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `create_cluster_yaml` is never used
[INFO] [stdout]    --> src/data/mod.rs:284:4
[INFO] [stdout]     |
[INFO] [stdout] 284 | fn create_cluster_yaml(seq: &SeqDir) {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `create_snakefile` is never used
[INFO] [stdout]    --> src/data/mod.rs:302:4
[INFO] [stdout]     |
[INFO] [stdout] 302 | fn create_snakefile(seq: &SeqDir) {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `update_sample` is never used
[INFO] [stdout]    --> src/data/mod.rs:407:4
[INFO] [stdout]     |
[INFO] [stdout] 407 | fn update_sample(s: &mut SeqSample, mate: String, lane: String) {
[INFO] [stdout]     |    ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `create_config` is never used
[INFO] [stdout]    --> src/data/mod.rs:416:4
[INFO] [stdout]     |
[INFO] [stdout] 416 | fn create_config(sd: &SeqDir, dryrun: bool) {
[INFO] [stdout]     |    ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `mv_to_dir` is never used
[INFO] [stdout]    --> src/data/mod.rs:505:4
[INFO] [stdout]     |
[INFO] [stdout] 505 | fn mv_to_dir(file: &Path, dir: &Path) {
[INFO] [stdout]     |    ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `organize` is never used
[INFO] [stdout]    --> src/data/mod.rs:510:8
[INFO] [stdout]     |
[INFO] [stdout] 510 | pub fn organize(indir: &Path, dryrun: bool, verbose: bool) {
[INFO] [stdout]     |        ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated function `new` is never used
[INFO] [stdout]   --> src/data/mod.rs:42:12
[INFO] [stdout]    |
[INFO] [stdout] 42 |     pub fn new(path: &Path) -> SeqDir {
[INFO] [stdout]    |            ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `path` is never used
[INFO] [stdout]    --> src/data/mod.rs:104:12
[INFO] [stdout]     |
[INFO] [stdout] 104 |     pub fn path(&self) -> &Path {
[INFO] [stdout]     |            ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `date` is never used
[INFO] [stdout]    --> src/data/mod.rs:109:12
[INFO] [stdout]     |
[INFO] [stdout] 109 |     pub fn date(&self) -> Date {
[INFO] [stdout]     |            ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `instrument` is never used
[INFO] [stdout]    --> src/data/mod.rs:114:12
[INFO] [stdout]     |
[INFO] [stdout] 114 |     pub fn instrument(&self) -> &str {
[INFO] [stdout]     |            ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `run` is never used
[INFO] [stdout]    --> src/data/mod.rs:119:12
[INFO] [stdout]     |
[INFO] [stdout] 119 |     pub fn run(&self) -> u16 {
[INFO] [stdout]     |            ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `position` is never used
[INFO] [stdout]    --> src/data/mod.rs:124:12
[INFO] [stdout]     |
[INFO] [stdout] 124 |     pub fn position(&self) -> char {
[INFO] [stdout]     |            ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `flowcell` is never used
[INFO] [stdout]    --> src/data/mod.rs:129:12
[INFO] [stdout]     |
[INFO] [stdout] 129 |     pub fn flowcell(&self) -> &str {
[INFO] [stdout]     |            ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `description` is never used
[INFO] [stdout]    --> src/data/mod.rs:134:12
[INFO] [stdout]     |
[INFO] [stdout] 134 |     pub fn description(&self) -> &str {
[INFO] [stdout]     |            ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `create_reserved_files` is never used
[INFO] [stdout]    --> src/data/mod.rs:139:12
[INFO] [stdout]     |
[INFO] [stdout] 139 |     pub fn create_reserved_files(&self, verbose: bool, dryrun: bool) {
[INFO] [stdout]     |            ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `create_reserved_dirs` is never used
[INFO] [stdout]    --> src/data/mod.rs:158:12
[INFO] [stdout]     |
[INFO] [stdout] 158 |     pub fn create_reserved_dirs(&self, verbose: bool, dryrun: bool) {
[INFO] [stdout]     |            ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `relocate_hts_files` is never used
[INFO] [stdout]    --> src/data/mod.rs:177:12
[INFO] [stdout]     |
[INFO] [stdout] 177 |     pub fn relocate_hts_files(&self, verbose: bool, dryrun: bool) {
[INFO] [stdout]     |            ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: multiple fields are never read
[INFO] [stdout]   --> src/record/header.rs:45:5
[INFO] [stdout]    |
[INFO] [stdout] 43 | pub(crate) struct CasavaV1_8Name {
[INFO] [stdout]    |                   -------------- fields in this struct
[INFO] [stdout] 44 |     /// Instrument name
[INFO] [stdout] 45 |     instrument: Option<String>,
[INFO] [stdout]    |     ^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 48 |     lane: Option<u8>,
[INFO] [stdout]    |     ^^^^
[INFO] [stdout] ...
[INFO] [stdout] 51 |     tile: Option<u8>,
[INFO] [stdout]    |     ^^^^
[INFO] [stdout] ...
[INFO] [stdout] 54 |     x: Option<u8>,
[INFO] [stdout]    |     ^
[INFO] [stdout] ...
[INFO] [stdout] 57 |     y: Option<u8>,
[INFO] [stdout]    |     ^
[INFO] [stdout] ...
[INFO] [stdout] 61 |     sample_index: Option<u8>,
[INFO] [stdout]    |     ^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 64 |     pair_member: Option<u8>,
[INFO] [stdout]    |     ^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `CasavaV1_8Name` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `id`, `description`, and `length` are never read
[INFO] [stdout]   --> src/record/header.rs:71:5
[INFO] [stdout]    |
[INFO] [stdout] 69 | pub(crate) struct SraName<'id> {
[INFO] [stdout]    |                   ------- fields in this struct
[INFO] [stdout] 70 |     /// Clobbered record ID
[INFO] [stdout] 71 |     id: Cow<'id, [u8]>,
[INFO] [stdout]    |     ^^
[INFO] [stdout] ...
[INFO] [stdout] 74 |     description: Cow<'id, [u8]>,
[INFO] [stdout]    |     ^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 77 |     length: Cow<'id, [u8]>,
[INFO] [stdout]    |     ^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `SraName` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 28 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 55.68s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: buf_redux v0.8.4, nom v5.1.2, quick-xml v0.22.0
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 2`
[INFO] running `Command { std: "docker" "inspect" "a2178917e921161ad09568c5dffd80e65cf12a39fe44d3aa70956b4d3c17ff99", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a2178917e921161ad09568c5dffd80e65cf12a39fe44d3aa70956b4d3c17ff99", kill_on_drop: false }`
[INFO] [stdout] a2178917e921161ad09568c5dffd80e65cf12a39fe44d3aa70956b4d3c17ff99
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5ff2268d62e97bff2cde7d5815dd6ed5b47097566f13b8d0ca110b04b60e07ed" "/opt/rustwide/cargo-home/bin/cargo" "+1.69.0" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] afea0d1c9dc6d7ccb420a3d0983dc0e7c9097e52f99d87b03b0ec5228f1e7ffb
[INFO] running `Command { std: "docker" "start" "-a" "afea0d1c9dc6d7ccb420a3d0983dc0e7c9097e52f99d87b03b0ec5228f1e7ffb", kill_on_drop: false }`
[INFO] [stderr] warning: function `filter` is never used
[INFO] [stderr]   --> src/align/filter.rs:50:8
[INFO] [stderr]    |
[INFO] [stderr] 50 | pub fn filter<T: RecordReader, S: RecordWriter>(
[INFO] [stderr]    |        ^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(dead_code)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: fields `genome_depth` and `genome_support` are never read
[INFO] [stderr]    --> src/align/info_stats.rs:130:5
[INFO] [stderr]     |
[INFO] [stderr] 110 | pub struct SamBamCramStats {
[INFO] [stderr]     |            --------------- fields in this struct
[INFO] [stderr] ...
[INFO] [stderr] 130 |     genome_depth: (),
[INFO] [stderr]     |     ^^^^^^^^^^^^
[INFO] [stderr] ...
[INFO] [stderr] 133 |     genome_support: (),
[INFO] [stderr]     |     ^^^^^^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = note: `SamBamCramStats` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stderr] 
[INFO] [stderr] warning: variant `Cram` is never constructed
[INFO] [stderr]  --> src/align/reader.rs:9:5
[INFO] [stderr]   |
[INFO] [stderr] 6 | pub enum SamBamCramReader<R1: BufRead, R2: Read> {
[INFO] [stderr]   |          ---------------- variant in this enum
[INFO] [stderr] ...
[INFO] [stderr] 9 |     Cram,
[INFO] [stderr]   |     ^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: constant `RESERVED_DIRNAMES` is never used
[INFO] [stderr]   --> src/data/mod.rs:18:7
[INFO] [stderr]    |
[INFO] [stderr] 18 | const RESERVED_DIRNAMES: [&'static str; 7] = [
[INFO] [stderr]    |       ^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: constant `RESERVED_FILENAMES` is never used
[INFO] [stderr]   --> src/data/mod.rs:21:7
[INFO] [stderr]    |
[INFO] [stderr] 21 | const RESERVED_FILENAMES: [&'static str; 5] = [
[INFO] [stderr]    |       ^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: multiple fields are never read
[INFO] [stderr]   --> src/data/mod.rs:31:5
[INFO] [stderr]    |
[INFO] [stderr] 30 | struct SeqDir {
[INFO] [stderr]    |        ------ fields in this struct
[INFO] [stderr] 31 |     path: PathBuf,
[INFO] [stderr]    |     ^^^^
[INFO] [stderr] 32 |     date: Date,
[INFO] [stderr]    |     ^^^^
[INFO] [stderr] 33 |     instrument: String,
[INFO] [stderr]    |     ^^^^^^^^^^
[INFO] [stderr] 34 |     run: u16,
[INFO] [stderr]    |     ^^^
[INFO] [stderr] 35 |     position: char,
[INFO] [stderr]    |     ^^^^^^^^
[INFO] [stderr] 36 |     flowcell: String,
[INFO] [stderr]    |     ^^^^^^^^
[INFO] [stderr] 37 |     description: String,
[INFO] [stderr]    |     ^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `SeqDir` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stderr] 
[INFO] [stderr] warning: function `create_reserved_file` is never used
[INFO] [stderr]    --> src/data/mod.rs:248:4
[INFO] [stderr]     |
[INFO] [stderr] 248 | fn create_reserved_file(seq: &SeqDir, file: &str) {
[INFO] [stderr]     |    ^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: function `create_reserved_dir` is never used
[INFO] [stderr]    --> src/data/mod.rs:258:4
[INFO] [stderr]     |
[INFO] [stderr] 258 | fn create_reserved_dir(p: PathBuf) {
[INFO] [stderr]     |    ^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: function `create_readme` is never used
[INFO] [stderr]    --> src/data/mod.rs:263:4
[INFO] [stderr]     |
[INFO] [stderr] 263 | fn create_readme(seq: &SeqDir) {
[INFO] [stderr]     |    ^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: function `create_cluster_yaml` is never used
[INFO] [stderr]    --> src/data/mod.rs:284:4
[INFO] [stderr]     |
[INFO] [stderr] 284 | fn create_cluster_yaml(seq: &SeqDir) {
[INFO] [stderr]     |    ^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: function `create_snakefile` is never used
[INFO] [stderr]    --> src/data/mod.rs:302:4
[INFO] [stderr]     |
[INFO] [stderr] 302 | fn create_snakefile(seq: &SeqDir) {
[INFO] [stderr]     |    ^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: function `update_sample` is never used
[INFO] [stderr]    --> src/data/mod.rs:407:4
[INFO] [stderr]     |
[INFO] [stderr] 407 | fn update_sample(s: &mut SeqSample, mate: String, lane: String) {
[INFO] [stderr]     |    ^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: function `create_config` is never used
[INFO] [stderr]    --> src/data/mod.rs:416:4
[INFO] [stderr]     |
[INFO] [stderr] 416 | fn create_config(sd: &SeqDir, dryrun: bool) {
[INFO] [stderr]     |    ^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: function `mv_to_dir` is never used
[INFO] [stderr]    --> src/data/mod.rs:505:4
[INFO] [stderr]     |
[INFO] [stderr] 505 | fn mv_to_dir(file: &Path, dir: &Path) {
[INFO] [stderr]     |    ^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: function `organize` is never used
[INFO] [stderr]    --> src/data/mod.rs:510:8
[INFO] [stderr]     |
[INFO] [stderr] 510 | pub fn organize(indir: &Path, dryrun: bool, verbose: bool) {
[INFO] [stderr]     |        ^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: associated function `new` is never used
[INFO] [stderr]   --> src/data/mod.rs:42:12
[INFO] [stderr]    |
[INFO] [stderr] 42 |     pub fn new(path: &Path) -> SeqDir {
[INFO] [stderr]    |            ^^^
[INFO] [stderr] 
[INFO] [stderr] warning: method `path` is never used
[INFO] [stderr]    --> src/data/mod.rs:104:12
[INFO] [stderr]     |
[INFO] [stderr] 104 |     pub fn path(&self) -> &Path {
[INFO] [stderr]     |            ^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: method `date` is never used
[INFO] [stderr]    --> src/data/mod.rs:109:12
[INFO] [stderr]     |
[INFO] [stderr] 109 |     pub fn date(&self) -> Date {
[INFO] [stderr]     |            ^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: method `instrument` is never used
[INFO] [stderr]    --> src/data/mod.rs:114:12
[INFO] [stderr]     |
[INFO] [stderr] 114 |     pub fn instrument(&self) -> &str {
[INFO] [stderr]     |            ^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: method `run` is never used
[INFO] [stderr]    --> src/data/mod.rs:119:12
[INFO] [stderr]     |
[INFO] [stderr] 119 |     pub fn run(&self) -> u16 {
[INFO] [stderr]     |            ^^^
[INFO] [stderr] 
[INFO] [stderr] warning: method `position` is never used
[INFO] [stderr]    --> src/data/mod.rs:124:12
[INFO] [stderr]     |
[INFO] [stderr] 124 |     pub fn position(&self) -> char {
[INFO] [stderr]     |            ^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: method `flowcell` is never used
[INFO] [stderr]    --> src/data/mod.rs:129:12
[INFO] [stderr]     |
[INFO] [stderr] 129 |     pub fn flowcell(&self) -> &str {
[INFO] [stderr]     |            ^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: method `description` is never used
[INFO] [stderr]    --> src/data/mod.rs:134:12
[INFO] [stderr]     |
[INFO] [stderr] 134 |     pub fn description(&self) -> &str {
[INFO] [stderr]     |            ^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: method `create_reserved_files` is never used
[INFO] [stderr]    --> src/data/mod.rs:139:12
[INFO] [stderr]     |
[INFO] [stderr] 139 |     pub fn create_reserved_files(&self, verbose: bool, dryrun: bool) {
[INFO] [stderr]     |            ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: method `create_reserved_dirs` is never used
[INFO] [stderr]    --> src/data/mod.rs:158:12
[INFO] [stderr]     |
[INFO] [stderr] 158 |     pub fn create_reserved_dirs(&self, verbose: bool, dryrun: bool) {
[INFO] [stderr]     |            ^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: method `relocate_hts_files` is never used
[INFO] [stderr]    --> src/data/mod.rs:177:12
[INFO] [stderr]     |
[INFO] [stderr] 177 |     pub fn relocate_hts_files(&self, verbose: bool, dryrun: bool) {
[INFO] [stderr]     |            ^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: multiple fields are never read
[INFO] [stderr]   --> src/record/header.rs:45:5
[INFO] [stderr]    |
[INFO] [stderr] 43 | pub(crate) struct CasavaV1_8Name {
[INFO] [stderr]    |                   -------------- fields in this struct
[INFO] [stderr] 44 |     /// Instrument name
[INFO] [stderr] 45 |     instrument: Option<String>,
[INFO] [stderr]    |     ^^^^^^^^^^
[INFO] [stderr] ...
[INFO] [stderr] 48 |     lane: Option<u8>,
[INFO] [stderr]    |     ^^^^
[INFO] [stderr] ...
[INFO] [stderr] 51 |     tile: Option<u8>,
[INFO] [stderr]    |     ^^^^
[INFO] [stderr] ...
[INFO] [stderr] 54 |     x: Option<u8>,
[INFO] [stderr]    |     ^
[INFO] [stderr] ...
[INFO] [stderr] 57 |     y: Option<u8>,
[INFO] [stderr]    |     ^
[INFO] [stderr] ...
[INFO] [stderr] 61 |     sample_index: Option<u8>,
[INFO] [stderr]    |     ^^^^^^^^^^^^
[INFO] [stderr] ...
[INFO] [stderr] 64 |     pair_member: Option<u8>,
[INFO] [stderr]    |     ^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `CasavaV1_8Name` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stderr] 
[INFO] [stderr] warning: fields `id`, `description`, and `length` are never read
[INFO] [stderr]   --> src/record/header.rs:71:5
[INFO] [stderr]    |
[INFO] [stderr] 69 | pub(crate) struct SraName<'id> {
[INFO] [stderr]    |                   ------- fields in this struct
[INFO] [stderr] 70 |     /// Clobbered record ID
[INFO] [stderr] 71 |     id: Cow<'id, [u8]>,
[INFO] [stderr]    |     ^^
[INFO] [stderr] ...
[INFO] [stderr] 74 |     description: Cow<'id, [u8]>,
[INFO] [stderr]    |     ^^^^^^^^^^^
[INFO] [stderr] ...
[INFO] [stderr] 77 |     length: Cow<'id, [u8]>,
[INFO] [stderr]    |     ^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `SraName` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stderr] 
[INFO] [stderr] warning: `bio-jtools` (bin "bjt" test) generated 28 warnings
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.91s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: buf_redux v0.8.4, nom v5.1.2, quick-xml v0.22.0
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 2`
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/bjt-b779d965ba8e6376)
[INFO] [stdout] 
[INFO] [stdout] running 10 tests
[INFO] [stdout] test fastq::info_stats::tests::it_works ... ok
[INFO] [stdout] test record::header::tests::casavav1_8_is_casava ... ok
[INFO] [stdout] test record::header::tests::casavav1_4_is_casava ... ok
[INFO] [stdout] test record::header::tests::err_in_read_name ... ok
[INFO] [stdout] test record::header::tests::casavav1_8_without_sample_index_is_casava ... ok
[INFO] [stdout] test record::header::tests::casavav1_is_casava ... ok
[INFO] [stdout] test record::header::tests::srr_without_original_info_is_sra ... ok
[INFO] [stdout] test record::header::tests::srr_in_origfmt_is_casava ... ok
[INFO] [stdout] test record::header::tests::srr_without_original_info_nor_length_is_sra ... ok
[INFO] [stdout] test record::header::tests::srr_is_sra ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 10 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.05s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "afea0d1c9dc6d7ccb420a3d0983dc0e7c9097e52f99d87b03b0ec5228f1e7ffb", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "afea0d1c9dc6d7ccb420a3d0983dc0e7c9097e52f99d87b03b0ec5228f1e7ffb", kill_on_drop: false }`
[INFO] [stdout] afea0d1c9dc6d7ccb420a3d0983dc0e7c9097e52f99d87b03b0ec5228f1e7ffb
