[INFO] fetching crate atglib 0.2.0...
[INFO] testing atglib-0.2.0 against beta-2023-04-20 for beta-1.70-1
[INFO] extracting crate atglib 0.2.0 into /workspace/builds/worker-0-tc2/source
[INFO] validating manifest of crates.io crate atglib 0.2.0 on toolchain beta-2023-04-20
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2023-04-20" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate atglib 0.2.0
[INFO] finished tweaking crates.io crate atglib 0.2.0
[INFO] tweaked toml for crates.io crate atglib 0.2.0 written to /workspace/builds/worker-0-tc2/source/Cargo.toml
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" __CARGO_TEST_CHANNEL_OVERRIDE_DO_NOT_USE_THIS="nightly" "/workspace/cargo-home/bin/cargo" "+beta-2023-04-20" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }`
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2023-04-20" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5ff2268d62e97bff2cde7d5815dd6ed5b47097566f13b8d0ca110b04b60e07ed" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2023-04-20" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 2f5797617db41e2394b4371391de4a969ae7cfd63345fcf6fdcd5c8885880640
[INFO] running `Command { std: "docker" "start" "-a" "2f5797617db41e2394b4371391de4a969ae7cfd63345fcf6fdcd5c8885880640", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "2f5797617db41e2394b4371391de4a969ae7cfd63345fcf6fdcd5c8885880640", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2f5797617db41e2394b4371391de4a969ae7cfd63345fcf6fdcd5c8885880640", kill_on_drop: false }`
[INFO] [stdout] 2f5797617db41e2394b4371391de4a969ae7cfd63345fcf6fdcd5c8885880640
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5ff2268d62e97bff2cde7d5815dd6ed5b47097566f13b8d0ca110b04b60e07ed" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2023-04-20" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 3a65b2c714ff0ce6b28233ca063c60696a49357070bc9cbdc7d5d45ad6901b2d
[INFO] running `Command { std: "docker" "start" "-a" "3a65b2c714ff0ce6b28233ca063c60696a49357070bc9cbdc7d5d45ad6901b2d", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.56
[INFO] [stderr]    Compiling quote v1.0.26
[INFO] [stderr]    Compiling unicode-ident v1.0.8
[INFO] [stderr]    Compiling serde_derive v1.0.160
[INFO] [stderr]    Compiling log v0.4.17
[INFO] [stderr]    Compiling serde v1.0.160
[INFO] [stderr]    Compiling syn v2.0.15
[INFO] [stderr]    Compiling atglib v0.2.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 8.96s
[INFO] running `Command { std: "docker" "inspect" "3a65b2c714ff0ce6b28233ca063c60696a49357070bc9cbdc7d5d45ad6901b2d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "3a65b2c714ff0ce6b28233ca063c60696a49357070bc9cbdc7d5d45ad6901b2d", kill_on_drop: false }`
[INFO] [stdout] 3a65b2c714ff0ce6b28233ca063c60696a49357070bc9cbdc7d5d45ad6901b2d
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5ff2268d62e97bff2cde7d5815dd6ed5b47097566f13b8d0ca110b04b60e07ed" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2023-04-20" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] fb925d428d2bea01e287f8a9b46d5d5d8f5a3e0190f821d0a45b0ef907f460c4
[INFO] running `Command { std: "docker" "start" "-a" "fb925d428d2bea01e287f8a9b46d5d5d8f5a3e0190f821d0a45b0ef907f460c4", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling atglib v0.2.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 2.43s
[INFO] running `Command { std: "docker" "inspect" "fb925d428d2bea01e287f8a9b46d5d5d8f5a3e0190f821d0a45b0ef907f460c4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "fb925d428d2bea01e287f8a9b46d5d5d8f5a3e0190f821d0a45b0ef907f460c4", kill_on_drop: false }`
[INFO] [stdout] fb925d428d2bea01e287f8a9b46d5d5d8f5a3e0190f821d0a45b0ef907f460c4
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5ff2268d62e97bff2cde7d5815dd6ed5b47097566f13b8d0ca110b04b60e07ed" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2023-04-20" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 99ff7bc32571bde104bfe1c5c62140f0cb34386e92dc4ac2d0a7a0a5e9ad8d76
[INFO] running `Command { std: "docker" "start" "-a" "99ff7bc32571bde104bfe1c5c62140f0cb34386e92dc4ac2d0a7a0a5e9ad8d76", kill_on_drop: false }`
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.02s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/atglib-a1a9c221c7407156)
[INFO] [stdout] 
[INFO] [stdout] running 125 tests
[INFO] [stdout] test fasta::reader::tests::test_fai_reading ... ok
[INFO] [stdout] test fasta::reader::tests::test_fai_errors ... ok
[INFO] [stdout] test fasta::reader::tests::test_fasta_reading ... ok
[INFO] [stdout] test fasta::writer::tests::test_creating_writer ... ok
[INFO] [stdout] test genepredext::reader::tests::test_nm_001365057 ... ok
[INFO] [stdout] test genepred::writer::tests::test_nm_001371720 ... ok
[INFO] [stdout] test fasta::writer::tests::test_sequence_building ... ok
[INFO] [stdout] test genepredext::reader::tests::test_nm_001371720 ... ok
[INFO] [stdout] test genepredext::reader::tests::test_nm_001365408 ... ok
[INFO] [stdout] test genepredext::writer::tests::test_nm_001365408 ... ok
[INFO] [stdout] test genepred::writer::tests::test_nm_201550 ... ok
[INFO] [stdout] test genepredext::writer::tests::test_nm_001365057 ... ok
[INFO] [stdout] test genepredext::writer::tests::test_nm_201550 ... ok
[INFO] [stdout] test gtf::reader::tests::test_nm_001365408 ... ok
[INFO] [stdout] test gtf::reader::test_nm_201550::test_read ... ok
[INFO] [stdout] test gtf::reader::tests::test_nm_001371720 ... ok
[INFO] [stdout] test gtf::reader::tests::test_nm_001365057 ... ok
[INFO] [stdout] test genepred::writer::tests::test_nm_001365408 ... ok
[INFO] [stdout] test genepred::writer::tests::test_nm_001365057 ... ok
[INFO] [stdout] test gtf::reader::test_ighm::test_read ... ok
[INFO] [stdout] test genepredext::writer::tests::test_nm_001371720 ... ok
[INFO] [stdout] test gtf::reader::tests::test_nm_201550 ... ok
[INFO] [stdout] test gtf::reader::test_nm_001385228::test_read ... ok
[INFO] [stdout] test genepredext::reader::tests::test_nm_201550 ... ok
[INFO] [stdout] test gtf::writer::tests::test_nm_001371720 ... ok
[INFO] [stdout] test models::genetic_code::tests::test_reverse_lookup ... ok
[INFO] [stdout] test gtf::writer::tests::test_nm_201550 ... ok
[INFO] [stdout] test gtf::record::tests::test_single_attribute_parsing ... ok
[INFO] [stdout] test gtf::writer::tests::test_nm_001365057 ... ok
[INFO] [stdout] test models::sequence::tests::test_chunks ... ok
[INFO] [stdout] test models::sequence::tests::test_create_sequence ... ok
[INFO] [stdout] test models::genetic_code::tests::test_transcript ... ok
[INFO] [stdout] test models::genetic_code::tests::test_start_codon ... ok
[INFO] [stdout] test gtf::record::tests::test_attributes_parsing ... ok
[INFO] [stdout] test gtf::writer::tests::test_nm_001365408 ... ok
[INFO] [stdout] test models::genetic_code::tests::test_stop_codon ... ok
[INFO] [stdout] test models::sequence::tests::test_contains ... ok
[INFO] [stdout] test models::genetic_code::tests::test_mito_stop_codon ... ok
[INFO] [stdout] test models::test_start_codon::case_4 ... ok
[INFO] [stdout] test models::test_start_codon_negative_strand::case_1 ... ok
[INFO] [stdout] test models::test_start_codon::case_6 ... ok
[INFO] [stdout] test models::test_start_codon_negative_strand::case_2 ... ok
[INFO] [stdout] test models::test_start_codon::case_2 ... ok
[INFO] [stdout] test models::test_start_codon_negative_strand::case_3 ... ok
[INFO] [stdout] test models::test_start_codon::case_3 ... ok
[INFO] [stdout] test models::test_codon::test_codon_builder ... ok
[INFO] [stdout] test models::test_start_codon::case_5 ... ok
[INFO] [stdout] test models::test_stop_codon::case_3 ... ok
[INFO] [stdout] test models::test_stop_codon::case_5 ... ok
[INFO] [stdout] test models::tests::test_frame_addition ... ok
[INFO] [stdout] test models::transcript::tests::test_exon_coordinates ... ok
[INFO] [stdout] test models::tests::test_exon_downstream_frame ... ok
[INFO] [stdout] test models::transcript::tests::test_utr5_coordinates ... ok
[INFO] [stdout] test models::transcript::tests::test_utr_coordinates ... ok
[INFO] [stdout] test models::transcript::tests::test_cds_coordinates ... ok
[INFO] [stdout] test models::test_stop_codon::case_4 ... ok
[INFO] [stdout] test models::test_start_codon::case_1 ... ok
[INFO] [stdout] test qc::test::test_correct_forward_single_stop_codon ... ok
[INFO] [stdout] test models::tests::test_special_transcripts ... ok
[INFO] [stdout] test models::test_stop_codon::case_6 ... ok
[INFO] [stdout] test models::transcript::tests::test_utr3_coordinates ... ok
[INFO] [stdout] test models::sequence::tests::test_contains_fails - should panic ... ok
[INFO] [stdout] test models::tests::test_transcript ... ok
[INFO] [stdout] test models::test_stop_codon::case_1 ... ok
[INFO] [stdout] test models::test_stop_codon::case_2 ... ok
[INFO] [stdout] test qc::test::test_check_inframe_stop ... ok
[INFO] [stdout] test qc::test::test_correct_cds_length ... ok
[INFO] [stdout] test qc::test::test_correct_forward_single_start_codon ... ok
[INFO] [stdout] test models::test_start_codon_negative_strand::case_4 ... ok
[INFO] [stdout] test qc::test::test_extra_start_codon ... ok
[INFO] [stdout] test qc::test::test_incorrect_cds_length ... ok
[INFO] [stdout] test qc::test::test_correct_forward_split_stop_codon ... ok
[INFO] [stdout] test qc::test::test_starts_with_start_codon ... ok
[INFO] [stdout] test qc::writer::tests::test_adding_genetic_codes ... ok
[INFO] [stdout] test refgene::reader::tests::test_missing_exon_start ... ok
[INFO] [stdout] test qc::test::test_correct_forward_split_start_codon ... ok
[INFO] [stdout] test refgene::reader::tests::test_nm_001365057 ... ok
[INFO] [stdout] test qc::writer::tests::test_chromosome_with_alternative_stop_codons ... ok
[INFO] [stdout] test refgene::reader::tests::test_nm_001365408 ... ok
[INFO] [stdout] test qc::test::test_non_coding_cds_length ... ok
[INFO] [stdout] test refgene::reader::tests::test_parse_exons_no_cds ... ok
[INFO] [stdout] test refgene::reader::tests::test_nm_201550 ... ok
[INFO] [stdout] test refgene::reader::tests::test_wrong_exon_frame ... ok
[INFO] [stdout] test refgene::writer::tests::test_nm_001365057 ... ok
[INFO] [stdout] test refgene::tests::test_parsing_and_composing ... ok
[INFO] [stdout] test refgene::writer::tests::test_nm_201550 ... ok
[INFO] [stdout] test refgene::tests::test_transcript_building ... ok
[INFO] [stdout] test refgene::tests::test_parse_exons_with_cds ... ok
[INFO] [stdout] test spliceai::writer::test_spliceailine::test_multiple_transcripts ... ok
[INFO] [stdout] test refgene::writer::tests::test_nm_001371720 ... ok
[INFO] [stdout] test spliceai::writer::test_spliceailine::test_single_transcript ... ok
[INFO] [stdout] test refgene::writer::tests::test_nm_001365408 ... ok
[INFO] [stdout] test utils::genomic_relations::test_intersect::test_a_fully_in_b ... ok
[INFO] [stdout] test utils::genomic_relations::test_intersect::test_b_fully_in_a ... ok
[INFO] [stdout] test utils::genomic_relations::test_intersect::test_no_overlap ... ok
[INFO] [stdout] test spliceai::writer::test_spliceailine::write_transcripts ... ok
[INFO] [stdout] test qc::test::test_correct_reverse_single_stop_codon ... ok
[INFO] [stdout] test qc::test::test_qc_check ... ok
[INFO] [stdout] test refgene::reader::tests::test_missing_exon_frame ... ok
[INFO] [stdout] test qc::test::test_incorrect_forward_split_start_codon ... ok
[INFO] [stdout] test qc::test::test_incorrect_forward_single_start_codon ... ok
[INFO] [stdout] test refgene::reader::tests::test_nm_001371720 ... ok
[INFO] [stdout] test qc::test::test_correct_reverse_split_start_codon ... ok
[INFO] [stdout] test utils::genomic_relations::test_intersect::test_left_overlap ... ok
[INFO] [stdout] test refgene::reader::tests::test_missing_exon_stop ... ok
[INFO] [stdout] test utils::genomic_relations::test_merge::test_merge ... ok
[INFO] [stdout] test utils::genomic_relations::test_relation::test_overlaps ... ok
[INFO] [stdout] test utils::genomic_relations::test_relation::test_left ... ok
[INFO] [stdout] test utils::genomic_relations::test_relation::test_inside ... ok
[INFO] [stdout] test utils::genomic_relations::test_overlap::test_cds_overlap ... ok
[INFO] [stdout] test utils::genomic_relations::test_intersect::test_right_overlap ... ok
[INFO] [stdout] test utils::genomic_relations::test_relation::test_match ... ok
[INFO] [stdout] test spliceai::writer::test_spliceailine::write_multiple_transcripts ... ok
[INFO] [stdout] test tests::transcripts::tests::test_mito_transcript ... ok
[INFO] [stdout] test qc::test::test_correct_reverse_single_start_codon ... ok
[INFO] [stdout] test utils::genomic_relations::test_relation::test_downstream ... ok
[INFO] [stdout] test utils::genomic_relations::test_relation::test_right ... ok
[INFO] [stdout] test utils::genomic_relations::test_subtraction::test_case_3 ... ok
[INFO] [stdout] test utils::genomic_relations::test_subtraction::test_case_7 ... ok
[INFO] [stdout] test utils::genomic_relations::test_relation::test_upstream ... ok
[INFO] [stdout] test utils::genomic_relations::test_subtraction::test_case_1 ... ok
[INFO] [stdout] test utils::genomic_relations::test_subtraction::test_case_2 ... ok
[INFO] [stdout] test utils::genomic_relations::test_subtraction::test_case_6 ... ok
[INFO] [stdout] test utils::genomic_relations::test_subtraction::test_case_5 ... ok
[INFO] [stdout] test utils::genomic_relations::test_subtraction::test_case_4 ... ok
[INFO] [stderr]    Doc-tests atglib
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 125 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.13s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 88 tests
[INFO] [stdout] test src/genepredext/reader.rs - genepredext::reader::Reader<R>::transcripts (line 125) ... ok
[INFO] [stdout] test src/fasta/reader.rs - fasta::reader::FastaReader<R>::from_reader (line 220) ... ok
[INFO] [stdout] test src/fasta/reader.rs - fasta::reader::FastaReader<File>::from_file (line 156) ... ok
[INFO] [stdout] test src/fasta/writer.rs - fasta::writer::Writer<W,R>::header_template (line 173) ... ok
[INFO] [stdout] test src/gtf/reader.rs - gtf::reader::Reader (line 20) ... ok
[INFO] [stdout] test src/fasta/writer.rs - fasta::writer::Writer<W,R>::fasta_reader (line 127) ... ok
[INFO] [stdout] test src/fasta/reader.rs - fasta::reader::FastaReader<File>::new (line 176) ... ok
[INFO] [stdout] test src/fasta/reader.rs - fasta::reader::FastaReader<R>::read_sequence (line 271) ... ok
[INFO] [stdout] test src/genepred/writer.rs - genepred::writer::Writer (line 12) ... ok
[INFO] [stdout] test src/genepredext/reader.rs - genepredext::reader::Reader<File>::from_file (line 44) ... ok
[INFO] [stdout] test src/genepredext/reader.rs - genepredext::reader::Reader (line 16) ... ok
[INFO] [stdout] test src/fasta/writer.rs - fasta::writer::Writer (line 31) ... ok
[INFO] [stdout] test src/genepredext/writer.rs - genepredext::writer::Writer (line 12) ... ok
[INFO] [stdout] test src/bed/writer.rs - bed::writer::Writer (line 14) ... ok
[INFO] [stdout] test src/fasta/reader.rs - fasta::reader::FastaReader (line 136) ... ok
[INFO] [stdout] test src/gtf/record.rs - gtf::record::GtfRecordBuilder (line 333) ... ok
[INFO] [stdout] test src/fasta/writer.rs - fasta::writer::Writer (line 54) ... ok
[INFO] [stdout] test src/models/exon.rs - models::exon::Exon (line 10) ... ok
[INFO] [stdout] test src/models/codon.rs - models::codon::Codon::from_transcript (line 41) ... ok
[INFO] [stdout] test src/lib.rs - (line 43) ... ok
[INFO] [stdout] test src/models/aminoacid.rs - models::aminoacid::AminoAcid::single_letter (line 58) ... ok
[INFO] [stdout] test src/models/frame.rs - models::frame::Frame (line 17) ... ok
[INFO] [stdout] test src/models/exon.rs - models::exon::Exon::is_coding (line 124) ... ok
[INFO] [stdout] test src/gtf/reader.rs - gtf::reader::Reader<R>::transcripts (line 127) ... ok
[INFO] [stdout] test src/models/aminoacid.rs - models::aminoacid::AminoAcid (line 12) ... ok
[INFO] [stdout] test src/models/exon.rs - models::exon::Exon::new (line 38) ... ok
[INFO] [stdout] test src/gtf/reader.rs - gtf::reader::Reader<File>::from_file (line 49) ... ok
[INFO] [stdout] test src/models/frame.rs - models::frame::Frame::from_gtf (line 67) ... ok
[INFO] [stdout] test src/gtf/writer.rs - gtf::writer::Writer (line 17) ... ok
[INFO] [stdout] test src/models/frame.rs - models::frame::Frame::from_refgene (line 86) ... ok
[INFO] [stdout] test src/models/genetic_code.rs - models::genetic_code::GeneticCode::vertebrate_mitochondrial (line 115) ... ok
[INFO] [stdout] test src/models/frame.rs - models::frame::Frame::to_gtf (line 110) ... ok
[INFO] [stdout] test src/models/genetic_code.rs - models::genetic_code::GeneticCode::guess (line 167) ... ok
[INFO] [stdout] test src/models/genetic_code.rs - models::genetic_code::GeneticCode::is_stop_codon (line 283) ... ok
[INFO] [stdout] test src/models/genetic_code.rs - models::genetic_code::GeneticCode::is_start_codon (line 305) ... ok
[INFO] [stdout] test src/models/genetic_code.rs - models::genetic_code::GeneticCode::translate (line 221) ... ok
[INFO] [stdout] test src/models/sequence.rs - models::sequence::Nucleotide::as_ncbi_int (line 106) ... ok
[INFO] [stdout] test src/models/genetic_code.rs - models::genetic_code::GeneticCode::reverse_lookup (line 237) ... ok
[INFO] [stdout] test src/lib.rs - (line 22) ... ok
[INFO] [stdout] test src/models/genetic_code.rs - models::genetic_code::GeneticCode (line 22) ... ok
[INFO] [stdout] test src/models/genetic_code.rs - models::genetic_code::GeneticCode::new (line 78) ... ok
[INFO] [stdout] test src/models/genetic_code.rs - models::genetic_code::GeneticCode::stop_codons (line 268) ... ok
[INFO] [stdout] test src/models/sequence.rs - models::sequence::Nucleotide::to_str (line 83) ... ok
[INFO] [stdout] test src/models/frame.rs - models::frame::Frame::to_refgene (line 129) ... ok
[INFO] [stdout] test src/models/sequence.rs - models::sequence::Nucleotide::complement (line 45) ... ok
[INFO] [stdout] test src/models/sequence.rs - models::sequence::Sequence::clear (line 466) ... ok
[INFO] [stdout] test src/models/sequence.rs - models::sequence::Nucleotide::to_bytes (line 66) ... ok
[INFO] [stdout] test src/models/sequence.rs - models::sequence::Sequence::contains (line 646) ... ok
[INFO] [stdout] test src/models/sequence.rs - models::sequence::Sequence::append (line 480) ... ok
[INFO] [stdout] test src/models/sequence.rs - models::sequence::Sequence::chunks (line 593) ... ok
[INFO] [stdout] test src/models/sequence.rs - models::sequence::Sequence::new (line 299) ... ok
[INFO] [stdout] test src/models/sequence.rs - models::sequence::Sequence::position (line 611) ... ok
[INFO] [stdout] test src/models/sequence.rs - models::sequence::Sequence::reverse_complement (line 535) ... ok
[INFO] [stdout] test src/models/sequence.rs - models::sequence::Sequence::len (line 412) ... ok
[INFO] [stdout] test src/models/sequence.rs - models::sequence::Sequence::equals (line 661) ... ok
[INFO] [stdout] test src/models/sequence.rs - models::sequence::Sequence::complement (line 501) ... ok
[INFO] [stdout] test src/models/sequence.rs - models::sequence::Sequence::reverse (line 519) ... ok
[INFO] [stdout] test src/models/sequence.rs - models::sequence::Sequence::from_raw_bytes (line 350) ... ok
[INFO] [stdout] test src/models/sequence.rs - models::sequence::Sequence::push (line 447) ... ok
[INFO] [stdout] test src/models/sequence.rs - models::sequence::Sequence::from_coordinates (line 376) ... ok
[INFO] [stdout] test src/models/sequence.rs - models::sequence::Sequence::to_bytes (line 552) ... ok
[INFO] [stdout] test src/models/sequence.rs - models::sequence::Sequence::push_char (line 431) ... ok
[INFO] [stdout] test src/models/transcript.rs - models::transcript::TranscriptBuilder (line 443) ... ok
[INFO] [stdout] test src/models/sequence.rs - models::sequence::Sequence::with_capacity (line 322) ... ok
[INFO] [stdout] test src/models/transcripts.rs - models::transcripts::Transcripts::by_gene (line 97) ... ok
[INFO] [stdout] test src/models/transcripts.rs - models::transcripts::Transcripts::by_name (line 66) ... ok
[INFO] [stdout] test src/models/sequence.rs - models::sequence::Sequence::write_into_string (line 568) ... ok
[INFO] [stdout] test src/models/utils.rs - models::utils::Strand (line 58) ... ok
[INFO] [stdout] test src/models/transcripts.rs - models::transcripts::Transcripts (line 13) ... ok
[INFO] [stdout] test src/models/transcript.rs - models::transcript::TranscriptBuilder<'a>::new (line 479) ... ok
[INFO] [stdout] test src/qc/mod.rs - qc (line 43) ... ok
[INFO] [stdout] test src/qc/mod.rs - qc::QcCheck::new (line 193) ... ok
[INFO] [stdout] test src/qc/mod.rs - qc::QcCheck (line 132) ... ok
[INFO] [stdout] test src/models/transcripts.rs - models::transcripts::Transcripts::push (line 128) ... ok
[INFO] [stdout] test src/refgene/reader.rs - refgene::reader::Reader<R>::transcripts (line 125) ... ok
[INFO] [stdout] test src/qc/mod.rs - qc (line 22) ... ok
[INFO] [stdout] test src/qc/writer.rs - qc::writer::Writer<W,R>::fasta_reader (line 79) ... ok
[INFO] [stdout] test src/refgene/writer.rs - refgene::writer::Writer (line 14) ... ok
[INFO] [stdout] test src/utils/genomic_relations.rs - utils::genomic_relations::exon_cds_overlap (line 213) ... ok
[INFO] [stdout] test src/refgene/reader.rs - refgene::reader::Reader (line 20) ... ok
[INFO] [stdout] test src/utils/genomic_relations.rs - utils::genomic_relations::intersect (line 42) ... ok
[INFO] [stdout] test src/qc/writer.rs - qc::writer::Writer<W,R>::add_genetic_code (line 108) ... ok
[INFO] [stdout] test src/utils/genomic_relations.rs - utils::genomic_relations::relation (line 184) ... ok
[INFO] [stdout] test src/spliceai/writer.rs - spliceai::writer::Writer (line 17) ... ok
[INFO] [stdout] test src/qc/writer.rs - qc::writer::Writer (line 16) ... ok
[INFO] [stdout] test src/refgene/reader.rs - refgene::reader::Reader<File>::from_file (line 48) ... ok
[INFO] [stdout] test src/utils/genomic_relations.rs - utils::genomic_relations::subtract (line 133) ... ok
[INFO] [stdout] test src/utils/genomic_relations.rs - utils::genomic_relations::union (line 66) ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 88 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 4.99s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "99ff7bc32571bde104bfe1c5c62140f0cb34386e92dc4ac2d0a7a0a5e9ad8d76", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "99ff7bc32571bde104bfe1c5c62140f0cb34386e92dc4ac2d0a7a0a5e9ad8d76", kill_on_drop: false }`
[INFO] [stdout] 99ff7bc32571bde104bfe1c5c62140f0cb34386e92dc4ac2d0a7a0a5e9ad8d76
