[INFO] fetching crate openbabel 0.5.3...
[INFO] testing openbabel-0.5.3 against 1.69.0 for beta-1.70-1
[INFO] extracting crate openbabel 0.5.3 into /workspace/builds/worker-4-tc1/source
[INFO] validating manifest of crates.io crate openbabel 0.5.3 on toolchain 1.69.0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.69.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate openbabel 0.5.3
[INFO] removed 0 missing examples
[INFO] finished tweaking crates.io crate openbabel 0.5.3
[INFO] tweaked toml for crates.io crate openbabel 0.5.3 written to /workspace/builds/worker-4-tc1/source/Cargo.toml
[INFO] crate crates.io crate openbabel 0.5.3 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.69.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded scratch v1.0.1
[INFO] [stderr]   Downloaded cxx-build v1.0.68
[INFO] [stderr]   Downloaded criterion v0.3.5
[INFO] [stderr]   Downloaded chiral-db-sources v0.2.0
[INFO] [stderr]   Downloaded cxxbridge-flags v1.0.67
[INFO] [stderr]   Downloaded cxxbridge-macro v1.0.67
[INFO] [stderr]   Downloaded link-cplusplus v1.0.6
[INFO] [stderr]   Downloaded cxx v1.0.67
[INFO] [stderr]   Downloaded openbabel-sys v0.5.3+openbabel-3.1.1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5ff2268d62e97bff2cde7d5815dd6ed5b47097566f13b8d0ca110b04b60e07ed" "/opt/rustwide/cargo-home/bin/cargo" "+1.69.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] dd41830c84c390d7218dd0a24bd53d3077f4388ac8556af795975f21a18bc540
[INFO] running `Command { std: "docker" "start" "-a" "dd41830c84c390d7218dd0a24bd53d3077f4388ac8556af795975f21a18bc540", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "dd41830c84c390d7218dd0a24bd53d3077f4388ac8556af795975f21a18bc540", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "dd41830c84c390d7218dd0a24bd53d3077f4388ac8556af795975f21a18bc540", kill_on_drop: false }`
[INFO] [stdout] dd41830c84c390d7218dd0a24bd53d3077f4388ac8556af795975f21a18bc540
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5ff2268d62e97bff2cde7d5815dd6ed5b47097566f13b8d0ca110b04b60e07ed" "/opt/rustwide/cargo-home/bin/cargo" "+1.69.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] ab333d0ddf881e824db9127db3db99f9df2b390acf0a010201608fa7d8d7e964
[INFO] running `Command { std: "docker" "start" "-a" "ab333d0ddf881e824db9127db3db99f9df2b390acf0a010201608fa7d8d7e964", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.37
[INFO] [stderr]    Compiling unicode-xid v0.2.2
[INFO] [stderr]    Compiling syn v1.0.91
[INFO] [stderr]    Compiling cc v1.0.73
[INFO] [stderr]    Compiling scratch v1.0.1
[INFO] [stderr]    Compiling unicode-width v0.1.9
[INFO] [stderr]    Compiling termcolor v1.1.3
[INFO] [stderr]    Compiling cxxbridge-flags v1.0.67
[INFO] [stderr]    Compiling rustversion v1.0.9
[INFO] [stderr]    Compiling once_cell v1.12.0
[INFO] [stderr]    Compiling serde_derive v1.0.137
[INFO] [stderr]    Compiling codespan-reporting v0.11.1
[INFO] [stderr]    Compiling fs_extra v1.2.0
[INFO] [stderr]    Compiling heck v0.4.0
[INFO] [stderr]    Compiling serde v1.0.137
[INFO] [stderr]    Compiling link-cplusplus v1.0.6
[INFO] [stderr]    Compiling cxx v1.0.67
[INFO] [stderr]    Compiling quote v1.0.18
[INFO] [stderr]    Compiling cxx-build v1.0.68
[INFO] [stderr]    Compiling cxxbridge-macro v1.0.67
[INFO] [stderr]    Compiling strum_macros v0.24.3
[INFO] [stderr]    Compiling strum v0.24.1
[INFO] [stderr]    Compiling openbabel-sys v0.5.3+openbabel-3.1.1
[INFO] [stderr]    Compiling openbabel v0.5.3 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 2m 37s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: fs_extra v1.2.0
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
[INFO] running `Command { std: "docker" "inspect" "ab333d0ddf881e824db9127db3db99f9df2b390acf0a010201608fa7d8d7e964", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ab333d0ddf881e824db9127db3db99f9df2b390acf0a010201608fa7d8d7e964", kill_on_drop: false }`
[INFO] [stdout] ab333d0ddf881e824db9127db3db99f9df2b390acf0a010201608fa7d8d7e964
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5ff2268d62e97bff2cde7d5815dd6ed5b47097566f13b8d0ca110b04b60e07ed" "/opt/rustwide/cargo-home/bin/cargo" "+1.69.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] ae7407f76ca5ad2c3897205ff09ede50e2e90496032172486f3373e8a14e0ede
[INFO] running `Command { std: "docker" "start" "-a" "ae7407f76ca5ad2c3897205ff09ede50e2e90496032172486f3373e8a14e0ede", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.126
[INFO] [stderr]    Compiling unicode-width v0.1.9
[INFO] [stderr]    Compiling crossbeam-utils v0.8.8
[INFO] [stderr]    Compiling semver v1.0.9
[INFO] [stderr]    Compiling memoffset v0.6.5
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.8
[INFO] [stderr]    Compiling memchr v2.5.0
[INFO] [stderr]    Compiling rayon-core v1.9.3
[INFO] [stderr]    Compiling codespan-reporting v0.11.1
[INFO] [stderr]    Compiling num-traits v0.2.15
[INFO] [stderr]    Compiling ryu v1.0.10
[INFO] [stderr]    Compiling serde_json v1.0.81
[INFO] [stderr]    Compiling either v1.6.1
[INFO] [stderr]    Compiling rustc_version v0.4.0
[INFO] [stderr]    Compiling cxx-build v1.0.68
[INFO] [stderr]    Compiling crossbeam-channel v0.5.4
[INFO] [stderr]    Compiling cast v0.2.7
[INFO] [stderr]    Compiling getrandom v0.2.7
[INFO] [stderr]    Compiling crossbeam-deque v0.8.1
[INFO] [stderr]    Compiling num_cpus v1.13.1
[INFO] [stderr]    Compiling rand_core v0.6.3
[INFO] [stderr]    Compiling rayon v1.5.3
[INFO] [stderr]    Compiling regex-automata v0.1.10
[INFO] [stderr]    Compiling itoa v1.0.2
[INFO] [stderr]    Compiling plotters-backend v0.3.2
[INFO] [stderr]    Compiling ppv-lite86 v0.2.16
[INFO] [stderr]    Compiling bstr v0.2.17
[INFO] [stderr]    Compiling plotters-svg v0.3.1
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling csv-core v0.1.10
[INFO] [stderr]    Compiling itertools v0.10.3
[INFO] [stderr]    Compiling textwrap v0.11.0
[INFO] [stderr]    Compiling same-file v1.0.6
[INFO] [stderr]    Compiling regex-syntax v0.6.26
[INFO] [stderr]    Compiling half v1.8.2
[INFO] [stderr]    Compiling clap v2.34.0
[INFO] [stderr]    Compiling plotters v0.3.1
[INFO] [stderr]    Compiling serde_cbor v0.11.2
[INFO] [stderr]    Compiling tinytemplate v1.2.1
[INFO] [stderr]    Compiling criterion-plot v0.4.4
[INFO] [stderr]    Compiling regex v1.5.6
[INFO] [stderr]    Compiling csv v1.1.6
[INFO] [stderr]    Compiling walkdir v2.3.2
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling oorandom v11.1.3
[INFO] [stderr]    Compiling openbabel-sys v0.5.3+openbabel-3.1.1
[INFO] [stderr]    Compiling chiral-db-sources v0.2.0
[INFO] [stderr]    Compiling criterion v0.3.5
[INFO] [stderr]    Compiling openbabel v0.5.3 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 3m 01s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: criterion v0.3.5, fs_extra v1.2.0
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 2`
[INFO] running `Command { std: "docker" "inspect" "ae7407f76ca5ad2c3897205ff09ede50e2e90496032172486f3373e8a14e0ede", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ae7407f76ca5ad2c3897205ff09ede50e2e90496032172486f3373e8a14e0ede", kill_on_drop: false }`
[INFO] [stdout] ae7407f76ca5ad2c3897205ff09ede50e2e90496032172486f3373e8a14e0ede
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5ff2268d62e97bff2cde7d5815dd6ed5b47097566f13b8d0ca110b04b60e07ed" "/opt/rustwide/cargo-home/bin/cargo" "+1.69.0" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] e8ec0ea4398c0f103fa999dbf17fdd47e158809f63c43c27765b14332229f6dc
[INFO] running `Command { std: "docker" "start" "-a" "e8ec0ea4398c0f103fa999dbf17fdd47e158809f63c43c27765b14332229f6dc", kill_on_drop: false }`
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.22s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: criterion v0.3.5, fs_extra v1.2.0
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 2`
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/openbabel-75a73098b2bd5b68)
[INFO] [stdout] 
[INFO] [stdout] running 9 tests
[INFO] [stdout] test io::test_io::test_string_for_mol ... ok
[INFO] [stdout] test molecule::test_mod_molecule::test_molecule ... ok
[INFO] [stderr] ==============================
[INFO] [stderr] *** Open Babel Error  in ParseParamFile
[INFO] [stderr]   Cannot open gaff.dat
[INFO] [stderr] ==============================
[INFO] [stderr] *** Open Babel Error  in SetTypes
[INFO] [stderr]   Cannot open gaff.prm
[INFO] [stderr] ==============================
[INFO] [stderr] *** Open Babel Error  in OBForceField_setup
[INFO] [stderr]   OBForceField->Setup() error
[INFO] [stderr] 
[INFO] [stderr] ==============================
[INFO] [stderr] *** Open Babel Error  in ParseParamFile
[INFO] [stderr]   Cannot open gaff.dat
[INFO] [stderr] ==============================
[INFO] [stderr] *** Open Babel Error  in ReadFile
[INFO] [stderr]   Cannot read from ./openbabel-sys/openbabel/test/files/3o8g_uff.sdf
[INFO] [stderr] ==============================
[INFO] [stderr] *** Open Babel Error  in OBConversion_read_file
[INFO] [stderr]   OBConversion::ReadFile error
[INFO] [stderr] 
[INFO] [stderr] ==============================
[INFO] [stderr] *** Open Babel Error  in ReadPatternFile
[INFO] [stderr]   Cannot open patterns.txt
[INFO] [stderr] 
[INFO] [stderr] ==============================
[INFO] [stderr] *** Open Babel Error  in ReadPatternFile
[INFO] [stderr]   Cannot open SMARTS_InteLigand.txt
[INFO] [stderr] 
[INFO] [stderr] ==============================
[INFO] [stderr] *** Open Babel Error  in SetTypes
[INFO] [stderr]   Cannot open gaff.prm
[INFO] [stderr] ==============================
[INFO] [stderr] *** Open Babel Error  in OBForceField_setup
[INFO] [stderr]   OBForceField->Setup() error
[INFO] [stderr] 
[INFO] [stdout] test smartspattern::test_mod_smartspattern::test_match ... ok
[INFO] [stderr] error: test failed, to rerun pass `--lib`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/deps/openbabel-75a73098b2bd5b68` (signal: 11, SIGSEGV: invalid memory reference)
[INFO] running `Command { std: "docker" "inspect" "e8ec0ea4398c0f103fa999dbf17fdd47e158809f63c43c27765b14332229f6dc", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e8ec0ea4398c0f103fa999dbf17fdd47e158809f63c43c27765b14332229f6dc", kill_on_drop: false }`
[INFO] [stdout] e8ec0ea4398c0f103fa999dbf17fdd47e158809f63c43c27765b14332229f6dc
