[INFO] fetching crate msbwt2 0.3.2...
[INFO] testing msbwt2-0.3.2 against beta-2023-04-20 for beta-1.70-1
[INFO] extracting crate msbwt2 0.3.2 into /workspace/builds/worker-3-tc2/source
[INFO] validating manifest of crates.io crate msbwt2 0.3.2 on toolchain beta-2023-04-20
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2023-04-20" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate msbwt2 0.3.2
[INFO] finished tweaking crates.io crate msbwt2 0.3.2
[INFO] tweaked toml for crates.io crate msbwt2 0.3.2 written to /workspace/builds/worker-3-tc2/source/Cargo.toml
[INFO] crate crates.io crate msbwt2 0.3.2 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2023-04-20" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded needletail v0.4.1
[INFO] [stderr]   Downloaded mimalloc v0.1.34
[INFO] [stderr]   Downloaded xz2 v0.1.7
[INFO] [stderr]   Downloaded libmimalloc-sys v0.1.30
[INFO] [stderr]   Downloaded lzma-sys v0.1.20
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5ff2268d62e97bff2cde7d5815dd6ed5b47097566f13b8d0ca110b04b60e07ed" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2023-04-20" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 3d1753bfb4dc56996eac0c0703b6fb8a2a46eeea57bfa5c95feae780d83cc313
[INFO] running `Command { std: "docker" "start" "-a" "3d1753bfb4dc56996eac0c0703b6fb8a2a46eeea57bfa5c95feae780d83cc313", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "3d1753bfb4dc56996eac0c0703b6fb8a2a46eeea57bfa5c95feae780d83cc313", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "3d1753bfb4dc56996eac0c0703b6fb8a2a46eeea57bfa5c95feae780d83cc313", kill_on_drop: false }`
[INFO] [stdout] 3d1753bfb4dc56996eac0c0703b6fb8a2a46eeea57bfa5c95feae780d83cc313
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5ff2268d62e97bff2cde7d5815dd6ed5b47097566f13b8d0ca110b04b60e07ed" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2023-04-20" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 04f9434b43780103f2a61b4c6f0e65b6768535a4084644d7e066077a2452c291
[INFO] running `Command { std: "docker" "start" "-a" "04f9434b43780103f2a61b4c6f0e65b6768535a4084644d7e066077a2452c291", kill_on_drop: false }`
[INFO] [stderr]    Compiling cc v1.0.78
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[INFO] [stderr]    Compiling memchr v2.5.0
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[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling libmimalloc-sys v0.1.30
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling clap v3.2.23
[INFO] [stderr]    Compiling bitvec v1.0.1
[INFO] [stderr]    Compiling regex v1.7.1
[INFO] [stderr]    Compiling xz2 v0.1.7
[INFO] [stderr]    Compiling env_logger v0.9.3
[INFO] [stderr]    Compiling bzip2 v0.4.4
[INFO] [stderr]    Compiling mimalloc v0.1.34
[INFO] [stderr]    Compiling needletail v0.4.1
[INFO] [stderr]    Compiling msbwt2 v0.3.2 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 12.11s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: buf_redux v0.8.4
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
[INFO] running `Command { std: "docker" "inspect" "04f9434b43780103f2a61b4c6f0e65b6768535a4084644d7e066077a2452c291", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "04f9434b43780103f2a61b4c6f0e65b6768535a4084644d7e066077a2452c291", kill_on_drop: false }`
[INFO] [stdout] 04f9434b43780103f2a61b4c6f0e65b6768535a4084644d7e066077a2452c291
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5ff2268d62e97bff2cde7d5815dd6ed5b47097566f13b8d0ca110b04b60e07ed" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2023-04-20" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 61218a39732cee76c7fffb43e3ed8e694a10ec9c63c4e10967e0b1a957140e47
[INFO] running `Command { std: "docker" "start" "-a" "61218a39732cee76c7fffb43e3ed8e694a10ec9c63c4e10967e0b1a957140e47", kill_on_drop: false }`
[INFO] [stderr]    Compiling crossbeam-utils v0.8.14
[INFO] [stderr]    Compiling proc-macro2 v1.0.50
[INFO] [stderr]    Compiling quote v1.0.23
[INFO] [stderr]    Compiling scopeguard v1.1.0
[INFO] [stderr]    Compiling getrandom v0.1.16
[INFO] [stderr]    Compiling memoffset v0.7.1
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.13
[INFO] [stderr]    Compiling unicode-ident v1.0.6
[INFO] [stderr]    Compiling num-traits v0.2.15
[INFO] [stderr]    Compiling syn v1.0.107
[INFO] [stderr]    Compiling rayon-core v1.10.2
[INFO] [stderr]    Compiling num_cpus v1.15.0
[INFO] [stderr]    Compiling regex-automata v0.1.10
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling serde_derive v1.0.152
[INFO] [stderr]    Compiling unicode-width v0.1.10
[INFO] [stderr]    Compiling plotters-backend v0.3.4
[INFO] [stderr]    Compiling textwrap v0.11.0
[INFO] [stderr]    Compiling csv-core v0.1.10
[INFO] [stderr]    Compiling itoa v0.4.8
[INFO] [stderr]    Compiling plotters-svg v0.3.3
[INFO] [stderr]    Compiling bstr v0.2.17
[INFO] [stderr]    Compiling ppv-lite86 v0.2.17
[INFO] [stderr]    Compiling cast v0.3.0
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[INFO] [stderr]    Compiling half v1.8.2
[INFO] [stderr]    Compiling clap v2.34.0
[INFO] [stderr]    Compiling rand_core v0.5.1
[INFO] [stderr]    Compiling walkdir v2.3.2
[INFO] [stderr]    Compiling criterion-plot v0.4.5
[INFO] [stderr]    Compiling tinytemplate v1.2.1
[INFO] [stderr]    Compiling oorandom v11.1.3
[INFO] [stderr]    Compiling fastrand v1.8.0
[INFO] [stderr]    Compiling remove_dir_all v0.5.3
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling serde_cbor v0.11.2
[INFO] [stderr]    Compiling crossbeam-channel v0.5.6
[INFO] [stderr]    Compiling csv v1.1.6
[INFO] [stderr]    Compiling rand_chacha v0.2.2
[INFO] [stderr]    Compiling tempfile v3.3.0
[INFO] [stderr]    Compiling rand v0.7.3
[INFO] [stderr]    Compiling crossbeam-deque v0.8.2
[INFO] [stderr]    Compiling plotters v0.3.4
[INFO] [stderr]    Compiling rayon v1.6.1
[INFO] [stderr]    Compiling criterion v0.3.6
[INFO] [stderr]    Compiling msbwt2 v0.3.2 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 20.85s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: buf_redux v0.8.4
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
[INFO] running `Command { std: "docker" "inspect" "61218a39732cee76c7fffb43e3ed8e694a10ec9c63c4e10967e0b1a957140e47", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "61218a39732cee76c7fffb43e3ed8e694a10ec9c63c4e10967e0b1a957140e47", kill_on_drop: false }`
[INFO] [stdout] 61218a39732cee76c7fffb43e3ed8e694a10ec9c63c4e10967e0b1a957140e47
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5ff2268d62e97bff2cde7d5815dd6ed5b47097566f13b8d0ca110b04b60e07ed" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2023-04-20" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 73a4745f67c165f1c582bad9861f1cfc49d65df2ad57ef5511dcafc1532a04ab
[INFO] running `Command { std: "docker" "start" "-a" "73a4745f67c165f1c582bad9861f1cfc49d65df2ad57ef5511dcafc1532a04ab", kill_on_drop: false }`
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.08s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: buf_redux v0.8.4
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/msbwt2-2fabbdb2accf5b1d)
[INFO] [stdout] 
[INFO] [stdout] running 47 tests
[INFO] [stdout] test bwt_converter::tests::test_newline ... ok
[INFO] [stdout] test bwt_converter::tests::test_convert_to_vec ... ok
[INFO] [stdout] test bwt_converter::tests::test_bwt_conversion ... ok
[INFO] [stdout] test bwt_util::tests::test_cycle_breaker ... ok
[INFO] [stdout] test dynamic_bwt::tests::test_load_dynamicbwt_from_vec ... ok
[INFO] [stdout] test bwt_converter::tests::test_save_bwt_numpy ... ok
[INFO] [stdout] test dynamic_bwt::tests::test_multi_length ... ok
[INFO] [stdout] test bwt_util::tests::merging_samples_of_high_similarity_works ... ok
[INFO] [stdout] test bwt_converter::tests::test_save_bwt_runs_numpy ... ok
[INFO] [stdout] test bwt_util::tests::test_diff_len ... ok
[INFO] [stdout] test dynamic_bwt::tests::test_count_kmer ... ok
[INFO] [stdout] test bwt_util::tests::merging_samples_of_different_size_example_works ... ok
[INFO] [stdout] test dynamic_bwt::tests::test_load_dynamicbwt_from_npy ... ok
[INFO] [stdout] test bwt_converter::tests::test_compression ... ok
[INFO] [stdout] test dynamic_bwt::tests::test_constrain_range ... ok
[INFO] [stdout] test bwt_util::tests::test_basic ... ok
[INFO] [stdout] test dynamic_bwt::tests::test_multi_string_sorted ... ok
[INFO] [stdout] test dynamic_bwt::tests::test_create_from_fastx ... ok
[INFO] [stdout] test dynamic_bwt::tests::test_single_string ... ok
[INFO] [stdout] test dynamic_bwt::tests::test_run_iter ... ok
[INFO] [stdout] test dynamic_bwt::tests::test_multi_string_unsorted ... ok
[INFO] [stdout] test rle_bplus_tree::tests::test_failure_case_002 ... ok
[INFO] [stdout] test rle_bwt::tests::test_fmindex ... ok
[INFO] [stdout] test rle_bwt::tests::test_count_kmer ... ok
[INFO] [stdout] test rle_bplus_tree::tests::test_simple_inserts ... ok
[INFO] [stdout] test run_block_av_flat::tests::test_increment_run ... ok
[INFO] [stdout] test rle_bwt::tests::test_constrain_range ... ok
[INFO] [stdout] test rle_bplus_tree::tests::test_init ... ok
[INFO] [stdout] test rle_bplus_tree::tests::test_failure_case_003 ... ok
[INFO] [stdout] test run_block_av_flat::tests::test_block_failure_001 ... ok
[INFO] [stdout] test bwt_util::tests::merging_paper_example_works ... ok
[INFO] [stdout] test rle_bplus_tree::tests::test_failure_case_001 ... ok
[INFO] [stdout] test run_block_av_flat::tests::test_block_splits ... ok
[INFO] [stdout] test run_block_av_flat::tests::test_init ... ok
[INFO] [stdout] test dynamic_bwt::tests::test_load_and_add ... ok
[INFO] [stdout] test dynamic_bwt::tests::test_init ... ok
[INFO] [stdout] test rle_bwt::tests::test_load_rlebwt_from_npy ... ok
[INFO] [stdout] test string_util::tests::test_reverse_complement_i ... ok
[INFO] [stdout] test string_util::tests::test_convert_itos ... ok
[INFO] [stdout] test run_block_av_flat::tests::test_insert_splitting ... ok
[INFO] [stdout] test string_util::tests::test_convert_stoi ... ok
[INFO] [stdout] test run_block_av_flat::tests::test_to_vec ... ok
[INFO] [stdout] test run_block_av_flat::tests::test_insert ... ok
[INFO] [stdout] test string_util::tests::test_simple_index ... ok
[INFO] [stdout] test dynamic_bwt::tests::test_sampled_bwt ... ok
[INFO] [stdout] test rle_bplus_tree::tests::test_run_iter ... ok
[INFO] [stdout] test rle_bplus_tree::tests::test_10krandom_insert ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 47 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 11.71s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/bin/msbwt2-build.rs (/opt/rustwide/target/debug/deps/msbwt2_build-6f406534ce634984)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/bin/msbwt2-convert.rs (/opt/rustwide/target/debug/deps/msbwt2_convert-883cab2f57971f63)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests msbwt2
[INFO] [stdout] 
[INFO] [stdout] running 38 tests
[INFO] [stdout] test src/dynamic_bwt.rs - dynamic_bwt::DynamicBWT::new (line 265) ... ok
[INFO] [stdout] test src/dynamic_bwt.rs - dynamic_bwt::DynamicBWT::insert_string (line 296) ... ok
[INFO] [stdout] test src/dynamic_bwt.rs - dynamic_bwt::DynamicBWT::load_numpy_file (line 124) ... ok
[INFO] [stdout] test src/bwt_util.rs - bwt_util::naive_bwt (line 148) ... ok
[INFO] [stdout] test src/dynamic_bwt.rs - dynamic_bwt::DynamicBWT::load_vector (line 63) ... ok
[INFO] [stdout] test src/bwt_converter.rs - bwt_converter::convert_to_vec (line 19) ... ok
[INFO] [stdout] test src/dynamic_bwt.rs - dynamic_bwt::DynamicBWT::to_vec (line 385) ... ok
[INFO] [stdout] test src/dynamic_bwt.rs - dynamic_bwt::DynamicBWT::get_symbol_count (line 213) ... ok
[INFO] [stdout] test src/dynamic_bwt.rs - dynamic_bwt::DynamicBWT::run_iter (line 419) ... ok
[INFO] [stdout] test src/dynamic_bwt.rs - dynamic_bwt::DynamicBWT::get_total_size (line 231) ... ok
[INFO] [stdout] test src/bwt_converter.rs - bwt_converter::save_bwt_numpy (line 89) ... FAILED
[INFO] [stdout] test src/bwt_converter.rs - bwt_converter::save_bwt_runs_numpy (line 139) ... FAILED
[INFO] [stdout] test src/bwt_util.rs - bwt_util::generate_offset_hashmap (line 64) ... ok
[INFO] [stdout] test src/dynamic_bwt.rs - dynamic_bwt::DynamicBWT::iter (line 399) ... ok
[INFO] [stdout] test src/dynamic_bwt.rs - dynamic_bwt::create_from_fastx (line 439) ... ok
[INFO] [stdout] test src/lib.rs - (line 20) ... ok
[INFO] [stdout] test src/bwt_util.rs - bwt_util::pairwise_bwt_merge (line 96) ... ok
[INFO] [stdout] test src/msbwt_core.rs - msbwt_core::BWT::count_kmer (line 105) ... ok
[INFO] [stdout] test src/msbwt_core.rs - msbwt_core::BWT::load_numpy_file (line 49) ... ok
[INFO] [stdout] test src/msbwt_core.rs - msbwt_core::BWT::load_vector (line 33) ... ok
[INFO] [stdout] test src/msbwt_core.rs - msbwt_core::BWT::get_symbol_count (line 64) ... ok
[INFO] [stdout] test src/msbwt_core.rs - msbwt_core::BWT::get_total_size (line 79) ... ok
[INFO] [stdout] test src/rle_bplus_tree.rs - rle_bplus_tree::RLEBPlusTree::count (line 138) ... ok
[INFO] [stdout] test src/rle_bplus_tree.rs - rle_bplus_tree::RLEBPlusTree::insert_and_count (line 196) ... ok
[INFO] [stdout] test src/rle_bplus_tree.rs - rle_bplus_tree::RLEBPlusTree::run_iter (line 443) ... ok
[INFO] [stdout] test src/rle_bwt.rs - rle_bwt::RleBWT::get_total_size (line 179) ... ok
[INFO] [stdout] test src/rle_bplus_tree.rs - rle_bplus_tree::RLEBPlusTree::to_vec (line 401) ... ok
[INFO] [stdout] test src/rle_bwt.rs - rle_bwt::RleBWT::get_symbol_count (line 161) ... ok
[INFO] [stdout] test src/lib.rs - (line 30) ... ok
[INFO] [stdout] test src/rle_bwt.rs - rle_bwt::RleBWT::load_vector (line 49) ... ok
[INFO] [stdout] test src/rle_bwt.rs - rle_bwt::RleBWT::load_numpy_file (line 72) ... ok
[INFO] [stdout] test src/rle_bwt.rs - rle_bwt::RleBWT::new (line 293) ... ok
[INFO] [stdout] test src/string_util.rs - string_util::convert_itos (line 73) ... ok
[INFO] [stdout] test src/string_util.rs - string_util::reverse_complement_i (line 38) ... ok
[INFO] [stdout] test src/string_util.rs - string_util::convert_stoi (line 56) ... ok
[INFO] [stdout] test src/run_block_av_flat.rs - run_block_av_flat::RLEBlock::insert_and_count (line 133) ... ok
[INFO] [stdout] test src/rle_bwt.rs - rle_bwt::RleBWT::with_bin_power (line 305) ... ok
[INFO] [stdout] test src/run_block_av_flat.rs - run_block_av_flat::RLEBlock::count (line 84) ... ok
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout] 
[INFO] [stdout] ---- src/bwt_converter.rs - bwt_converter::save_bwt_numpy (line 89) stdout ----
[INFO] [stdout] Test executable failed (exit status: 101).
[INFO] [stdout] 
[INFO] [stdout] stderr:
[INFO] [stdout] thread 'main' panicked at 'called `Result::unwrap()` on an `Err` value: Os { code: 30, kind: ReadOnlyFilesystem, message: "Read-only file system" }', src/bwt_converter.rs:11:41
[INFO] [stdout] stack backtrace:
[INFO] [stdout]    0:     0x55dbeaaaf44a - std::backtrace_rs::backtrace::libunwind::trace::h2f05d0192276a8f6
[INFO] [stdout]                                at /rustc/1b7dd2252b99671ce5d1cb9664c5f8636329436d/library/std/src/../../backtrace/src/backtrace/libunwind.rs:93:5
[INFO] [stdout]    1:     0x55dbeaaaf44a - std::backtrace_rs::backtrace::trace_unsynchronized::hedc23dff7a1af150
[INFO] [stdout]                                at /rustc/1b7dd2252b99671ce5d1cb9664c5f8636329436d/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5
[INFO] [stdout]    2:     0x55dbeaaaf44a - std::sys_common::backtrace::_print_fmt::h17541ef7592f3ce2
[INFO] [stdout]                                at /rustc/1b7dd2252b99671ce5d1cb9664c5f8636329436d/library/std/src/sys_common/backtrace.rs:65:5
[INFO] [stdout]    3:     0x55dbeaaaf44a - <std::sys_common::backtrace::_print::DisplayBacktrace as core::fmt::Display>::fmt::h20f75df5ab0c0792
[INFO] [stdout]                                at /rustc/1b7dd2252b99671ce5d1cb9664c5f8636329436d/library/std/src/sys_common/backtrace.rs:44:22
[INFO] [stdout]    4:     0x55dbeaac9b7f - core::fmt::write::h78109e6f466b3af6
[INFO] [stdout]                                at /rustc/1b7dd2252b99671ce5d1cb9664c5f8636329436d/library/core/src/fmt/mod.rs:1254:17
[INFO] [stdout]    5:     0x55dbeaaad245 - std::io::Write::write_fmt::hc59e1b02dd273c8a
[INFO] [stdout]                                at /rustc/1b7dd2252b99671ce5d1cb9664c5f8636329436d/library/std/src/io/mod.rs:1698:15
[INFO] [stdout]    6:     0x55dbeaaaf215 - std::sys_common::backtrace::_print::h8dac57a9f8fbf9a5
[INFO] [stdout]                                at /rustc/1b7dd2252b99671ce5d1cb9664c5f8636329436d/library/std/src/sys_common/backtrace.rs:47:5
[INFO] [stdout]    7:     0x55dbeaaaf215 - std::sys_common::backtrace::print::hf9ecbf41d1aa712f
[INFO] [stdout]                                at /rustc/1b7dd2252b99671ce5d1cb9664c5f8636329436d/library/std/src/sys_common/backtrace.rs:34:9
[INFO] [stdout]    8:     0x55dbeaab079e - std::panicking::default_hook::{{closure}}::h04c07acfc84ca028
[INFO] [stdout]                                at /rustc/1b7dd2252b99671ce5d1cb9664c5f8636329436d/library/std/src/panicking.rs:269:22
[INFO] [stdout]    9:     0x55dbeaab0545 - std::panicking::default_hook::h01f6bb23e1eceb2c
[INFO] [stdout]                                at /rustc/1b7dd2252b99671ce5d1cb9664c5f8636329436d/library/std/src/panicking.rs:288:9
[INFO] [stdout]   10:     0x55dbeaab0cfe - std::panicking::rust_panic_with_hook::h2bb3722bbaf2f6df
[INFO] [stdout]                                at /rustc/1b7dd2252b99671ce5d1cb9664c5f8636329436d/library/std/src/panicking.rs:691:13
[INFO] [stdout]   11:     0x55dbeaab0bf9 - std::panicking::begin_panic_handler::{{closure}}::h91bc7f36a4be011b
[INFO] [stdout]                                at /rustc/1b7dd2252b99671ce5d1cb9664c5f8636329436d/library/std/src/panicking.rs:582:13
[INFO] [stdout]   12:     0x55dbeaaaf8b6 - std::sys_common::backtrace::__rust_end_short_backtrace::h8b3d3717114f9e59
[INFO] [stdout]                                at /rustc/1b7dd2252b99671ce5d1cb9664c5f8636329436d/library/std/src/sys_common/backtrace.rs:150:18
[INFO] [stdout]   13:     0x55dbeaab0952 - rust_begin_unwind
[INFO] [stdout]                                at /rustc/1b7dd2252b99671ce5d1cb9664c5f8636329436d/library/std/src/panicking.rs:578:5
[INFO] [stdout]   14:     0x55dbeaa5af33 - core::panicking::panic_fmt::hfd368e3fbdabea26
[INFO] [stdout]                                at /rustc/1b7dd2252b99671ce5d1cb9664c5f8636329436d/library/core/src/panicking.rs:67:14
[INFO] [stdout]   15:     0x55dbeaa5b413 - core::result::unwrap_failed::he54eb4b2f125b26f
[INFO] [stdout]                                at /rustc/1b7dd2252b99671ce5d1cb9664c5f8636329436d/library/core/src/result.rs:1687:5
[INFO] [stdout]   16:     0x55dbeaa5c7ba - core::result::Result<T,E>::unwrap::h6e89a7a8b412d439
[INFO] [stdout]   17:     0x55dbeaa5e94f - rust_out::main::_doctest_main_src_bwt_converter_rs_89_0::ha8138210ac2c25b7
[INFO] [stdout]   18:     0x55dbeaa5e7c6 - rust_out::main::h2731449a68dfa004
[INFO] [stdout]   19:     0x55dbeaa5c483 - core::ops::function::FnOnce::call_once::hd1715aa1b26fc35c
[INFO] [stdout]   20:     0x55dbeaa5b806 - std::sys_common::backtrace::__rust_begin_short_backtrace::h8d2b4d09ce515535
[INFO] [stdout]   21:     0x55dbeaa5c239 - std::rt::lang_start::{{closure}}::hc9a918c63b0dc835
[INFO] [stdout]   22:     0x55dbeaaaad3e - core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once::h2eb19b8ce4148df4
[INFO] [stdout]                                at /rustc/1b7dd2252b99671ce5d1cb9664c5f8636329436d/library/core/src/ops/function.rs:287:13
[INFO] [stdout]   23:     0x55dbeaaaad3e - std::panicking::try::do_call::h2e900feff5d504c5
[INFO] [stdout]                                at /rustc/1b7dd2252b99671ce5d1cb9664c5f8636329436d/library/std/src/panicking.rs:485:40
[INFO] [stdout]   24:     0x55dbeaaaad3e - std::panicking::try::h8854836cb85aa9f2
[INFO] [stdout]                                at /rustc/1b7dd2252b99671ce5d1cb9664c5f8636329436d/library/std/src/panicking.rs:449:19
[INFO] [stdout]   25:     0x55dbeaaaad3e - std::panic::catch_unwind::h706025dd4c48f64b
[INFO] [stdout]                                at /rustc/1b7dd2252b99671ce5d1cb9664c5f8636329436d/library/std/src/panic.rs:140:14
[INFO] [stdout]   26:     0x55dbeaaaad3e - std::rt::lang_start_internal::{{closure}}::h7be5b97f4a07a91a
[INFO] [stdout]                                at /rustc/1b7dd2252b99671ce5d1cb9664c5f8636329436d/library/std/src/rt.rs:148:48
[INFO] [stdout]   27:     0x55dbeaaaad3e - std::panicking::try::do_call::h59847e9d0a176965
[INFO] [stdout]                                at /rustc/1b7dd2252b99671ce5d1cb9664c5f8636329436d/library/std/src/panicking.rs:485:40
[INFO] [stdout]   28:     0x55dbeaaaad3e - std::panicking::try::h399a918ba8522823
[INFO] [stdout]                                at /rustc/1b7dd2252b99671ce5d1cb9664c5f8636329436d/library/std/src/panicking.rs:449:19
[INFO] [stdout]   29:     0x55dbeaaaad3e - std::panic::catch_unwind::hca7ca6c55b2a2e26
[INFO] [stdout]                                at /rustc/1b7dd2252b99671ce5d1cb9664c5f8636329436d/library/std/src/panic.rs:140:14
[INFO] [stdout]   30:     0x55dbeaaaad3e - std::rt::lang_start_internal::h2c807a81560459eb
[INFO] [stdout]                                at /rustc/1b7dd2252b99671ce5d1cb9664c5f8636329436d/library/std/src/rt.rs:148:20
[INFO] [stdout]   31:     0x55dbeaa5c217 - std::rt::lang_start::hc4bd3329ce767e23
[INFO] [stdout]   32:     0x55dbeaa5eaf5 - main
[INFO] [stdout]   33:     0x7f7f1c70bd90 - <unknown>
[INFO] [stdout]   34:     0x7f7f1c70be40 - __libc_start_main
[INFO] [stdout]   35:     0x55dbeaa5b555 - _start
[INFO] [stdout]   36:                0x0 - <unknown>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] ---- src/bwt_converter.rs - bwt_converter::save_bwt_runs_numpy (line 139) stdout ----
[INFO] [stdout] Test executable failed (exit status: 101).
[INFO] [stdout] 
[INFO] [stdout] stderr:
[INFO] [stdout] thread 'main' panicked at 'called `Result::unwrap()` on an `Err` value: Os { code: 30, kind: ReadOnlyFilesystem, message: "Read-only file system" }', src/bwt_converter.rs:10:56
[INFO] [stdout] stack backtrace:
[INFO] [stdout]    0:     0x55d5e71d986a - std::backtrace_rs::backtrace::libunwind::trace::h2f05d0192276a8f6
[INFO] [stdout]                                at /rustc/1b7dd2252b99671ce5d1cb9664c5f8636329436d/library/std/src/../../backtrace/src/backtrace/libunwind.rs:93:5
[INFO] [stdout]    1:     0x55d5e71d986a - std::backtrace_rs::backtrace::trace_unsynchronized::hedc23dff7a1af150
[INFO] [stdout]                                at /rustc/1b7dd2252b99671ce5d1cb9664c5f8636329436d/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5
[INFO] [stdout]    2:     0x55d5e71d986a - std::sys_common::backtrace::_print_fmt::h17541ef7592f3ce2
[INFO] [stdout]                                at /rustc/1b7dd2252b99671ce5d1cb9664c5f8636329436d/library/std/src/sys_common/backtrace.rs:65:5
[INFO] [stdout]    3:     0x55d5e71d986a - <std::sys_common::backtrace::_print::DisplayBacktrace as core::fmt::Display>::fmt::h20f75df5ab0c0792
[INFO] [stdout]                                at /rustc/1b7dd2252b99671ce5d1cb9664c5f8636329436d/library/std/src/sys_common/backtrace.rs:44:22
[INFO] [stdout]    4:     0x55d5e71f781f - core::fmt::write::h78109e6f466b3af6
[INFO] [stdout]                                at /rustc/1b7dd2252b99671ce5d1cb9664c5f8636329436d/library/core/src/fmt/mod.rs:1254:17
[INFO] [stdout]    5:     0x55d5e71d7665 - std::io::Write::write_fmt::hc59e1b02dd273c8a
[INFO] [stdout]                                at /rustc/1b7dd2252b99671ce5d1cb9664c5f8636329436d/library/std/src/io/mod.rs:1698:15
[INFO] [stdout]    6:     0x55d5e71d9635 - std::sys_common::backtrace::_print::h8dac57a9f8fbf9a5
[INFO] [stdout]                                at /rustc/1b7dd2252b99671ce5d1cb9664c5f8636329436d/library/std/src/sys_common/backtrace.rs:47:5
[INFO] [stdout]    7:     0x55d5e71d9635 - std::sys_common::backtrace::print::hf9ecbf41d1aa712f
[INFO] [stdout]                                at /rustc/1b7dd2252b99671ce5d1cb9664c5f8636329436d/library/std/src/sys_common/backtrace.rs:34:9
[INFO] [stdout]    8:     0x55d5e71dabbe - std::panicking::default_hook::{{closure}}::h04c07acfc84ca028
[INFO] [stdout]                                at /rustc/1b7dd2252b99671ce5d1cb9664c5f8636329436d/library/std/src/panicking.rs:269:22
[INFO] [stdout]    9:     0x55d5e71da965 - std::panicking::default_hook::h01f6bb23e1eceb2c
[INFO] [stdout]                                at /rustc/1b7dd2252b99671ce5d1cb9664c5f8636329436d/library/std/src/panicking.rs:288:9
[INFO] [stdout]   10:     0x55d5e71db11e - std::panicking::rust_panic_with_hook::h2bb3722bbaf2f6df
[INFO] [stdout]                                at /rustc/1b7dd2252b99671ce5d1cb9664c5f8636329436d/library/std/src/panicking.rs:691:13
[INFO] [stdout]   11:     0x55d5e71db019 - std::panicking::begin_panic_handler::{{closure}}::h91bc7f36a4be011b
[INFO] [stdout]                                at /rustc/1b7dd2252b99671ce5d1cb9664c5f8636329436d/library/std/src/panicking.rs:582:13
[INFO] [stdout]   12:     0x55d5e71d9cd6 - std::sys_common::backtrace::__rust_end_short_backtrace::h8b3d3717114f9e59
[INFO] [stdout]                                at /rustc/1b7dd2252b99671ce5d1cb9664c5f8636329436d/library/std/src/sys_common/backtrace.rs:150:18
[INFO] [stdout]   13:     0x55d5e71dad72 - rust_begin_unwind
[INFO] [stdout]                                at /rustc/1b7dd2252b99671ce5d1cb9664c5f8636329436d/library/std/src/panicking.rs:578:5
[INFO] [stdout]   14:     0x55d5e717ef33 - core::panicking::panic_fmt::hfd368e3fbdabea26
[INFO] [stdout]                                at /rustc/1b7dd2252b99671ce5d1cb9664c5f8636329436d/library/core/src/panicking.rs:67:14
[INFO] [stdout]   15:     0x55d5e717f473 - core::result::unwrap_failed::he54eb4b2f125b26f
[INFO] [stdout]                                at /rustc/1b7dd2252b99671ce5d1cb9664c5f8636329436d/library/core/src/result.rs:1687:5
[INFO] [stdout]   16:     0x55d5e718092a - core::result::Result<T,E>::unwrap::h6e89a7a8b412d439
[INFO] [stdout]   17:     0x55d5e7187a0e - rust_out::main::_doctest_main_src_bwt_converter_rs_139_0::ha0086e8eecf59a65
[INFO] [stdout]   18:     0x55d5e71878b6 - rust_out::main::h2731449a68dfa004
[INFO] [stdout]   19:     0x55d5e7180383 - core::ops::function::FnOnce::call_once::hd1715aa1b26fc35c
[INFO] [stdout]   20:     0x55d5e717f936 - std::sys_common::backtrace::__rust_begin_short_backtrace::h8d2b4d09ce515535
[INFO] [stdout]   21:     0x55d5e7180199 - std::rt::lang_start::{{closure}}::hc9a918c63b0dc835
[INFO] [stdout]   22:     0x55d5e71d515e - core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once::h2eb19b8ce4148df4
[INFO] [stdout]                                at /rustc/1b7dd2252b99671ce5d1cb9664c5f8636329436d/library/core/src/ops/function.rs:287:13
[INFO] [stdout]   23:     0x55d5e71d515e - std::panicking::try::do_call::h2e900feff5d504c5
[INFO] [stdout]                                at /rustc/1b7dd2252b99671ce5d1cb9664c5f8636329436d/library/std/src/panicking.rs:485:40
[INFO] [stdout]   24:     0x55d5e71d515e - std::panicking::try::h8854836cb85aa9f2
[INFO] [stdout]                                at /rustc/1b7dd2252b99671ce5d1cb9664c5f8636329436d/library/std/src/panicking.rs:449:19
[INFO] [stdout]   25:     0x55d5e71d515e - std::panic::catch_unwind::h706025dd4c48f64b
[INFO] [stdout]                                at /rustc/1b7dd2252b99671ce5d1cb9664c5f8636329436d/library/std/src/panic.rs:140:14
[INFO] [stdout]   26:     0x55d5e71d515e - std::rt::lang_start_internal::{{closure}}::h7be5b97f4a07a91a
[INFO] [stdout]                                at /rustc/1b7dd2252b99671ce5d1cb9664c5f8636329436d/library/std/src/rt.rs:148:48
[INFO] [stdout]   27:     0x55d5e71d515e - std::panicking::try::do_call::h59847e9d0a176965
[INFO] [stdout]                                at /rustc/1b7dd2252b99671ce5d1cb9664c5f8636329436d/library/std/src/panicking.rs:485:40
[INFO] [stdout]   28:     0x55d5e71d515e - std::panicking::try::h399a918ba8522823
[INFO] [stdout]                                at /rustc/1b7dd2252b99671ce5d1cb9664c5f8636329436d/library/std/src/panicking.rs:449:19
[INFO] [stdout]   29:     0x55d5e71d515e - std::panic::catch_unwind::hca7ca6c55b2a2e26
[INFO] [stdout]                                at /rustc/1b7dd2252b99671ce5d1cb9664c5f8636329436d/library/std/src/panic.rs:140:14
[INFO] [stdout]   30:     0x55d5e71d515e - std::rt::lang_start_internal::h2c807a81560459eb
[INFO] [stdout]                                at /rustc/1b7dd2252b99671ce5d1cb9664c5f8636329436d/library/std/src/rt.rs:148:20
[INFO] [stdout]   31:     0x55d5e7180177 - std::rt::lang_start::hc4bd3329ce767e23
[INFO] [stdout]   32:     0x55d5e7187bb5 - main
[INFO] [stdout]   33:     0x7fd60d091d90 - <unknown>
[INFO] [stdout]   34:     0x7fd60d091e40 - __libc_start_main
[INFO] [stdout]   35:     0x55d5e717f5b5 - _start
[INFO] [stdout]   36:                0x0 - <unknown>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout]     src/bwt_converter.rs - bwt_converter::save_bwt_numpy (line 89)
[INFO] [stdout]     src/bwt_converter.rs - bwt_converter::save_bwt_runs_numpy (line 139)
[INFO] [stdout] 
[INFO] [stdout] test result: FAILED. 36 passed; 2 failed; 0 ignored; 0 measured; 0 filtered out; finished in 1.74s
[INFO] [stdout] 
[INFO] [stderr] error: doctest failed, to rerun pass `--doc`
[INFO] running `Command { std: "docker" "inspect" "73a4745f67c165f1c582bad9861f1cfc49d65df2ad57ef5511dcafc1532a04ab", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "73a4745f67c165f1c582bad9861f1cfc49d65df2ad57ef5511dcafc1532a04ab", kill_on_drop: false }`
[INFO] [stdout] 73a4745f67c165f1c582bad9861f1cfc49d65df2ad57ef5511dcafc1532a04ab
