[INFO] cloning repository https://github.com/10XGenomics/bamtofastq
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/10XGenomics/bamtofastq" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Fbamtofastq", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Fbamtofastq'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 1a1849eb8cb357f8f2ded7345ad91d11204e076f
[INFO] testing 10XGenomics/bamtofastq against 1.69.0 for beta-1.70-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Fbamtofastq" "/workspace/builds/worker-2-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc1/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/10XGenomics/bamtofastq on toolchain 1.69.0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.69.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] removed /workspace/builds/worker-2-tc1/source/.cargo/config.toml
[INFO] started tweaking git repo https://github.com/10XGenomics/bamtofastq
[INFO] finished tweaking git repo https://github.com/10XGenomics/bamtofastq
[INFO] tweaked toml for git repo https://github.com/10XGenomics/bamtofastq written to /workspace/builds/worker-2-tc1/source/Cargo.toml
[INFO] crate git repo https://github.com/10XGenomics/bamtofastq already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.69.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded openssl-sys v0.9.82
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded libdeflate-sys v0.7.5
[INFO] [stderr]   Downloaded rust-htslib v0.42.0
[INFO] [stderr]   Downloaded shardio v0.8.2
[INFO] [stderr]   Downloaded hts-sys v2.0.3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5ff2268d62e97bff2cde7d5815dd6ed5b47097566f13b8d0ca110b04b60e07ed" "/opt/rustwide/cargo-home/bin/cargo" "+1.69.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] f16fbac60749484bba4333484cc432d5dc8127ae937877302fb472f8f0a1b355
[INFO] running `Command { std: "docker" "start" "-a" "f16fbac60749484bba4333484cc432d5dc8127ae937877302fb472f8f0a1b355", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "f16fbac60749484bba4333484cc432d5dc8127ae937877302fb472f8f0a1b355", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f16fbac60749484bba4333484cc432d5dc8127ae937877302fb472f8f0a1b355", kill_on_drop: false }`
[INFO] [stdout] f16fbac60749484bba4333484cc432d5dc8127ae937877302fb472f8f0a1b355
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5ff2268d62e97bff2cde7d5815dd6ed5b47097566f13b8d0ca110b04b60e07ed" "/opt/rustwide/cargo-home/bin/cargo" "+1.69.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] a2afa6ae4f0144f773662546b6bbdb907d46e4a4351df24f6f3d8ec9c9307805
[INFO] running `Command { std: "docker" "start" "-a" "a2afa6ae4f0144f773662546b6bbdb907d46e4a4351df24f6f3d8ec9c9307805", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.52
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling libc v0.2.140
[INFO] [stderr]    Compiling memchr v2.5.0
[INFO] [stderr]    Compiling cfg-if v1.0.0
[INFO] [stderr]    Compiling serde_derive v1.0.156
[INFO] [stderr]    Compiling jobserver v0.1.26
[INFO] [stderr]    Compiling serde v1.0.156
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling cc v1.0.79
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling tinyvec_macros v0.1.1
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling thiserror v1.0.39
[INFO] [stderr]    Compiling tinyvec v1.6.0
[INFO] [stderr]    Compiling cmake v0.1.49
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling aho-corasick v1.0.1
[INFO] [stderr]    Compiling quote v1.0.26
[INFO] [stderr]    Compiling adler v1.0.2
[INFO] [stderr]    Compiling glob v0.3.1
[INFO] [stderr]    Compiling libz-sys v1.1.8
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling libdeflate-sys v0.7.5
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling lz4-sys v1.9.4
[INFO] [stderr]    Compiling backtrace v0.3.67
[INFO] [stderr]    Compiling io-lifetimes v1.0.4
[INFO] [stderr]    Compiling regex-syntax v0.7.1
[INFO] [stderr]    Compiling gimli v0.27.2
[INFO] [stderr]    Compiling crossbeam-utils v0.8.15
[INFO] [stderr]    Compiling hts-sys v2.0.3
[INFO] [stderr]    Compiling unicode-normalization v0.1.22
[INFO] [stderr]    Compiling miniz_oxide v0.6.2
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling object v0.30.3
[INFO] [stderr]    Compiling anyhow v1.0.70
[INFO] [stderr]    Compiling regex v1.8.1
[INFO] [stderr]    Compiling unicode-bidi v0.3.13
[INFO] [stderr]    Compiling addr2line v0.19.0
[INFO] [stderr]    Compiling thiserror-impl v1.0.39
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling percent-encoding v2.2.0
[INFO] [stderr]    Compiling rustix v0.37.7
[INFO] [stderr]    Compiling rustc-demangle v0.1.21
[INFO] [stderr]    Compiling crc32fast v1.3.2
[INFO] [stderr]    Compiling strum_macros v0.24.3
[INFO] [stderr]    Compiling log v0.4.17
[INFO] [stderr]    Compiling form_urlencoded v1.1.0
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling idna v0.3.0
[INFO] [stderr]    Compiling byteorder v1.4.3
[INFO] [stderr]    Compiling linux-raw-sys v0.3.1
[INFO] [stderr]    Compiling bitflags v1.3.2
[INFO] [stderr]    Compiling bio-types v0.13.0
[INFO] [stderr]    Compiling bincode v1.3.3
[INFO] [stderr]    Compiling crossbeam-channel v0.5.7
[INFO] [stderr]    Compiling url v2.3.1
[INFO] [stderr]    Compiling csv-core v0.1.10
[INFO] [stderr]    Compiling strsim v0.10.0
[INFO] [stderr]    Compiling either v1.8.1
[INFO] [stderr]    Compiling ryu v1.0.13
[INFO] [stderr]    Compiling min-max-heap v1.3.0
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling itoa v1.0.6
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling fastrand v1.9.0
[INFO] [stderr]    Compiling ieee754 v0.2.6
[INFO] [stderr]    Compiling csv v1.2.1
[INFO] [stderr]    Compiling tempfile v3.5.0
[INFO] [stderr]    Compiling itertools v0.10.5
[INFO] [stderr]    Compiling docopt v1.1.1
[INFO] [stderr]    Compiling serde_bytes v0.11.9
[INFO] [stderr]    Compiling flate2 v1.0.25
[INFO] [stderr]    Compiling lz4 v1.24.0
[INFO] [stderr]    Compiling shardio v0.8.2
[INFO] [stderr]    Compiling rust-htslib v0.42.0
[INFO] [stderr]    Compiling bamtofastq v1.4.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [optimized + debuginfo] target(s) in 48.57s
[INFO] running `Command { std: "docker" "inspect" "a2afa6ae4f0144f773662546b6bbdb907d46e4a4351df24f6f3d8ec9c9307805", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a2afa6ae4f0144f773662546b6bbdb907d46e4a4351df24f6f3d8ec9c9307805", kill_on_drop: false }`
[INFO] [stdout] a2afa6ae4f0144f773662546b6bbdb907d46e4a4351df24f6f3d8ec9c9307805
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5ff2268d62e97bff2cde7d5815dd6ed5b47097566f13b8d0ca110b04b60e07ed" "/opt/rustwide/cargo-home/bin/cargo" "+1.69.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 6da85e992c3fc8cabae90bce538bdc3596cbcae47e0eb11c5c28c547647aa5a9
[INFO] running `Command { std: "docker" "start" "-a" "6da85e992c3fc8cabae90bce538bdc3596cbcae47e0eb11c5c28c547647aa5a9", kill_on_drop: false }`
[INFO] [stderr]    Compiling bamtofastq v1.4.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [optimized + debuginfo] target(s) in 13.24s
[INFO] running `Command { std: "docker" "inspect" "6da85e992c3fc8cabae90bce538bdc3596cbcae47e0eb11c5c28c547647aa5a9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "6da85e992c3fc8cabae90bce538bdc3596cbcae47e0eb11c5c28c547647aa5a9", kill_on_drop: false }`
[INFO] [stdout] 6da85e992c3fc8cabae90bce538bdc3596cbcae47e0eb11c5c28c547647aa5a9
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:5ff2268d62e97bff2cde7d5815dd6ed5b47097566f13b8d0ca110b04b60e07ed" "/opt/rustwide/cargo-home/bin/cargo" "+1.69.0" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 59783ef410a04675e597607dddbd9dedd99586985614bdad03426b1b5b71051e
[INFO] running `Command { std: "docker" "start" "-a" "59783ef410a04675e597607dddbd9dedd99586985614bdad03426b1b5b71051e", kill_on_drop: false }`
[INFO] [stderr]     Finished test [optimized + debuginfo] target(s) in 0.10s
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/bamtofastq-a33eff3d58675db1)
[INFO] [stdout] 
[INFO] [stdout] running 7 tests
[INFO] [stdout] test tests::wrong_header ... ok
[INFO] [stdout] test tests::bad_bam ... ok
[INFO] [stdout] test tests::unpaired_record ... ok
[INFO] [stdout] test tests::test_cr12 ... ok
[INFO] [stdout] test tests::test_lr21 ... ok
[INFO] [stdout] test tests::test_lr20 ... ok
[INFO] [stdout] test tests::test_cr12_v1 ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 7 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.53s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "59783ef410a04675e597607dddbd9dedd99586985614bdad03426b1b5b71051e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "59783ef410a04675e597607dddbd9dedd99586985614bdad03426b1b5b71051e", kill_on_drop: false }`
[INFO] [stdout] 59783ef410a04675e597607dddbd9dedd99586985614bdad03426b1b5b71051e
