[INFO] fetching crate nu_plugin_bio 0.76.0...
[INFO] documenting nu_plugin_bio-0.76.0 against 1.68.0 for beta-1.69-rustdoc-1.2
[INFO] extracting crate nu_plugin_bio 0.76.0 into /workspace/builds/worker-1-tc1/source
[INFO] validating manifest of crates.io crate nu_plugin_bio 0.76.0 on toolchain 1.68.0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.68.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate nu_plugin_bio 0.76.0
[INFO] finished tweaking crates.io crate nu_plugin_bio 0.76.0
[INFO] tweaked toml for crates.io crate nu_plugin_bio 0.76.0 written to /workspace/builds/worker-1-tc1/source/Cargo.toml
[INFO] crate crates.io crate nu_plugin_bio 0.76.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.68.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
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[INFO] [stderr]   Downloaded gfa v0.10.1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:6ef671f6951f6f7b82eaf49ad0b3b99466e493f2d9d82dd96208252612681f61" "/opt/rustwide/cargo-home/bin/cargo" "+1.68.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] ed28c67882746208247f0028c94a475fab46bbe0c96a3b8de68af2a3e254b7e6
[INFO] running `Command { std: "docker" "start" "-a" "ed28c67882746208247f0028c94a475fab46bbe0c96a3b8de68af2a3e254b7e6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "ed28c67882746208247f0028c94a475fab46bbe0c96a3b8de68af2a3e254b7e6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ed28c67882746208247f0028c94a475fab46bbe0c96a3b8de68af2a3e254b7e6", kill_on_drop: false }`
[INFO] [stdout] ed28c67882746208247f0028c94a475fab46bbe0c96a3b8de68af2a3e254b7e6
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:6ef671f6951f6f7b82eaf49ad0b3b99466e493f2d9d82dd96208252612681f61" "/opt/rustwide/cargo-home/bin/cargo" "+1.68.0" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] b84ba6c19255e5879f9854288be33b1c212191caab2cda1ba75c7e995a12351f
[INFO] running `Command { std: "docker" "start" "-a" "b84ba6c19255e5879f9854288be33b1c212191caab2cda1ba75c7e995a12351f", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.137
[INFO] [stderr]    Compiling proc-macro2 v1.0.47
[INFO] [stderr]    Compiling quote v1.0.21
[INFO] [stderr]    Compiling unicode-ident v1.0.5
[INFO] [stderr]    Compiling syn v1.0.104
[INFO] [stderr]    Compiling memchr v2.5.0
[INFO] [stderr]    Compiling crossbeam-utils v0.8.14
[INFO] [stderr]    Compiling serde_derive v1.0.148
[INFO] [stderr]    Compiling serde v1.0.148
[INFO] [stderr]     Checking scopeguard v1.1.0
[INFO] [stderr]     Checking static_assertions v1.1.0
[INFO] [stderr]     Checking byteorder v1.4.3
[INFO] [stderr]     Checking bit-vec v0.6.3
[INFO] [stderr]    Compiling crc32fast v1.3.2
[INFO] [stderr]    Compiling indexmap v1.9.2
[INFO] [stderr]     Checking adler v1.0.2
[INFO] [stderr]     Checking hashbrown v0.12.3
[INFO] [stderr]     Checking noodles-core v0.10.0
[INFO] [stderr]     Checking miniz_oxide v0.6.2
[INFO] [stderr]    Compiling cc v1.0.77
[INFO] [stderr]    Compiling once_cell v1.16.0
[INFO] [stderr]    Compiling pkg-config v0.3.26
[INFO] [stderr]     Checking bytes v1.3.0
[INFO] [stderr]     Checking lexical-util v0.8.5
[INFO] [stderr]    Compiling lock_api v0.4.9
[INFO] [stderr]    Compiling memoffset v0.7.1
[INFO] [stderr]    Compiling typenum v1.15.0
[INFO] [stderr]     Checking crossbeam-channel v0.5.6
[INFO] [stderr]     Checking arrayvec v0.5.2
[INFO] [stderr]    Compiling regex-syntax v0.6.28
[INFO] [stderr]     Checking flate2 v1.0.25
[INFO] [stderr]    Compiling signal-hook v0.3.14
[INFO] [stderr]    Compiling parking_lot_core v0.9.4
[INFO] [stderr]     Checking log v0.4.17
[INFO] [stderr]    Compiling generic-array v0.14.6
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.13
[INFO] [stderr]    Compiling thiserror v1.0.37
[INFO] [stderr]     Checking smallvec v1.10.0
[INFO] [stderr]     Checking signal-hook-registry v1.4.0
[INFO] [stderr]     Checking mio v0.8.5
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]    Compiling ahash v0.8.3
[INFO] [stderr]    Compiling num-integer v0.1.45
[INFO] [stderr]     Checking noodles-bgzf v0.19.0
[INFO] [stderr]     Checking ryu v1.0.11
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[INFO] [stderr]    Compiling getrandom v0.2.8
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[INFO] [stderr]     Checking signal-hook-mio v0.2.3
[INFO] [stderr]     Checking aho-corasick v0.7.20
[INFO] [stderr]     Checking utf8parse v0.2.0
[INFO] [stderr]     Checking itoa v1.0.4
[INFO] [stderr]     Checking noodles-csi v0.13.0
[INFO] [stderr]    Compiling rayon-core v1.10.1
[INFO] [stderr]     Checking parking_lot v0.12.1
[INFO] [stderr]    Compiling erased-serde v0.3.23
[INFO] [stderr]    Compiling rustversion v1.0.9
[INFO] [stderr]     Checking crossbeam-deque v0.8.2
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]     Checking crossterm v0.24.0
[INFO] [stderr]    Compiling vte_generate_state_changes v0.1.1
[INFO] [stderr]     Checking lexical-parse-float v0.8.5
[INFO] [stderr]     Checking lexical-write-float v0.8.5
[INFO] [stderr]     Checking num_cpus v1.14.0
[INFO] [stderr]     Checking time v0.1.45
[INFO] [stderr]     Checking iana-time-zone v0.1.53
[INFO] [stderr]    Compiling serde_json v1.0.89
[INFO] [stderr]     Checking is_ci v1.1.1
[INFO] [stderr]     Checking arrayvec v0.7.2
[INFO] [stderr]     Checking smawk v0.3.1
[INFO] [stderr]     Checking unicode-width v0.1.10
[INFO] [stderr]     Checking supports-color v1.3.1
[INFO] [stderr]     Checking vte v0.10.1
[INFO] [stderr]     Checking hashbrown v0.13.2
[INFO] [stderr]     Checking noodles-fasta v0.18.0
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[INFO] [stderr]     Checking supports-hyperlinks v1.2.0
[INFO] [stderr]     Checking lexical-core v0.8.5
[INFO] [stderr]     Checking terminal_size v0.1.17
[INFO] [stderr]     Checking dirs-sys-next v0.1.2
[INFO] [stderr]     Checking lscolors v0.12.0
[INFO] [stderr]     Checking bit-set v0.5.3
[INFO] [stderr]    Compiling lexical-core v0.7.6
[INFO] [stderr]     Checking minimal-lexical v0.2.1
[INFO] [stderr]     Checking sys-locale v0.2.3
[INFO] [stderr]     Checking percent-encoding v2.2.0
[INFO] [stderr]     Checking owo-colors v3.5.0
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[INFO] [stderr]     Checking either v1.8.0
[INFO] [stderr]    Compiling heck v0.4.0
[INFO] [stderr]     Checking dirs-next v2.0.0
[INFO] [stderr]     Checking noodles-sam v0.23.0
[INFO] [stderr]     Checking noodles-tabix v0.16.0
[INFO] [stderr]     Checking strip-ansi-escapes v0.1.1
[INFO] [stderr]     Checking crypto-common v0.1.6
[INFO] [stderr]     Checking block-buffer v0.10.3
[INFO] [stderr]     Checking rayon v1.6.0
[INFO] [stderr]     Checking nu-utils v0.76.0
[INFO] [stderr]     Checking regex v1.7.0
[INFO] [stderr]    Compiling nom v5.1.2
[INFO] [stderr]     Checking nom v7.1.1
[INFO] [stderr]    Compiling paste v1.0.9
[INFO] [stderr]     Checking strum v0.24.1
[INFO] [stderr]     Checking lru v0.9.0
[INFO] [stderr]     Checking digest v0.10.6
[INFO] [stderr]    Compiling anyhow v1.0.66
[INFO] [stderr]     Checking bzip2 v0.4.3
[INFO] [stderr]     Checking md-5 v0.10.5
[INFO] [stderr]     Checking xz2 v0.1.7
[INFO] [stderr]     Checking nu-glob v0.76.0
[INFO] [stderr]     Checking noodles-gff v0.10.0
[INFO] [stderr]     Checking memmap v0.7.0
[INFO] [stderr]     Checking bstr v0.2.17
[INFO] [stderr]     Checking noodles-bed v0.7.0
[INFO] [stderr]     Checking regex-automata v0.1.10
[INFO] [stderr]     Checking noodles-fastq v0.6.0
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[INFO] [stderr]     Checking fancy-regex v0.11.0
[INFO] [stderr]     Checking bstr v1.0.1
[INFO] [stderr]     Checking noodles-bam v0.26.0
[INFO] [stderr]     Checking rmp v0.8.11
[INFO] [stderr]     Checking noodles-cram v0.23.0
[INFO] [stderr]     Checking sysinfo v0.28.0
[INFO] [stderr]     Checking noodles-vcf v0.24.0
[INFO] [stderr]    Compiling unicode-linebreak v0.1.4
[INFO] [stderr]     Checking noodles-bcf v0.20.0
[INFO] [stderr]     Checking noodles v0.32.0
[INFO] [stderr]    Compiling thiserror-impl v1.0.37
[INFO] [stderr]    Compiling ghost v0.1.6
[INFO] [stderr]    Compiling ctor v0.1.26
[INFO] [stderr]    Compiling miette-derive v5.5.0
[INFO] [stderr]    Compiling typetag-impl v0.2.5
[INFO] [stderr]    Compiling strum_macros v0.24.3
[INFO] [stderr]    Compiling bytemuck_derive v1.3.0
[INFO] [stderr]     Checking textwrap v0.15.2
[INFO] [stderr]     Checking inventory v0.3.3
[INFO] [stderr]     Checking bytemuck v1.12.3
[INFO] [stderr]     Checking gfa v0.10.1
[INFO] [stderr]     Checking pwd v1.4.0
[INFO] [stderr]     Checking miette v5.5.0
[INFO] [stderr]     Checking nu-path v0.76.0
[INFO] [stderr]     Checking chrono v0.4.23
[INFO] [stderr]     Checking linked-hash-map v0.5.6
[INFO] [stderr]     Checking byte-unit v4.0.17
[INFO] [stderr]     Checking bincode v1.3.3
[INFO] [stderr]     Checking rmp-serde v1.1.1
[INFO] [stderr]     Checking nu-json v0.76.0
[INFO] [stderr]     Checking typetag v0.2.5
[INFO] [stderr]     Checking chrono-humanize v0.2.2
[INFO] [stderr]     Checking nu-protocol v0.76.0
[INFO] [stderr]     Checking nu-engine v0.76.0
[INFO] [stderr]     Checking nu-plugin v0.76.0
[INFO] [stderr]  Documenting nu_plugin_bio v0.76.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 55.86s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nom v5.1.2
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 3`
[INFO] running `Command { std: "docker" "inspect" "b84ba6c19255e5879f9854288be33b1c212191caab2cda1ba75c7e995a12351f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b84ba6c19255e5879f9854288be33b1c212191caab2cda1ba75c7e995a12351f", kill_on_drop: false }`
[INFO] [stdout] b84ba6c19255e5879f9854288be33b1c212191caab2cda1ba75c7e995a12351f
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "RUSTC_BOOTSTRAP=1" "-e" "DOCS_RS=1" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:6ef671f6951f6f7b82eaf49ad0b3b99466e493f2d9d82dd96208252612681f61" "/opt/rustwide/cargo-home/bin/cargo" "+1.68.0" "rustdoc" "--lib" "-Zrustdoc-map" "-Z" "unstable-options" "--config" "build.rustdocflags=[\"-Z\", \"unstable-options\", \"--document-private-items\"]" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] f882b1e27017b67c7c87f90c206653bfb75a25c19d4d6ac03edb603aaebb81b5
[INFO] running `Command { std: "docker" "start" "-a" "f882b1e27017b67c7c87f90c206653bfb75a25c19d4d6ac03edb603aaebb81b5", kill_on_drop: false }`
[INFO] [stderr]  Documenting nu_plugin_bio v0.76.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1.76s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nom v5.1.2
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 4`
[INFO] running `Command { std: "docker" "inspect" "f882b1e27017b67c7c87f90c206653bfb75a25c19d4d6ac03edb603aaebb81b5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f882b1e27017b67c7c87f90c206653bfb75a25c19d4d6ac03edb603aaebb81b5", kill_on_drop: false }`
[INFO] [stdout] f882b1e27017b67c7c87f90c206653bfb75a25c19d4d6ac03edb603aaebb81b5