[INFO] cloning repository https://github.com/Mr-Milk/SpatialTis-core [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/Mr-Milk/SpatialTis-core" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMr-Milk%2FSpatialTis-core", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMr-Milk%2FSpatialTis-core'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] d574a42052209fd637162651f6a528e45a2a0531 [INFO] documenting Mr-Milk/SpatialTis-core against 1.66.0 for beta-1.67-rustdoc-3 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMr-Milk%2FSpatialTis-core" "/workspace/builds/worker-0-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc1/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/Mr-Milk/SpatialTis-core on toolchain 1.66.0 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.66.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] removed /workspace/builds/worker-0-tc1/source/rust-toolchain.toml [INFO] started tweaking git repo https://github.com/Mr-Milk/SpatialTis-core [INFO] finished tweaking git repo https://github.com/Mr-Milk/SpatialTis-core [INFO] tweaked toml for git repo https://github.com/Mr-Milk/SpatialTis-core written to /workspace/builds/worker-0-tc1/source/Cargo.toml [INFO] crate git repo https://github.com/Mr-Milk/SpatialTis-core already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.66.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] warning: unused manifest key: target.x86_64-apple-darwin.rustflags [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded bitflags v1.3.1 [INFO] [stderr] Downloaded permutation v0.4.0 [INFO] [stderr] Downloaded rstar v0.9.3 [INFO] [stderr] Downloaded numpy v0.17.2 [INFO] [stderr] Downloaded ndarray-stats v0.5.0 [INFO] [stderr] Downloaded wide v0.7.0 [INFO] [stderr] Downloaded geo v0.23.0 [INFO] [stderr] Downloaded kiddo v0.2.4 [INFO] [stderr] Downloaded counter v0.5.5 [INFO] [stderr] Downloaded delaunator v1.0.1 [INFO] [stderr] Downloaded geo-types v0.7.7 [INFO] [stderr] Downloaded pyo3-build-config v0.17.1 [INFO] [stderr] Downloaded pyo3-ffi v0.17.1 [INFO] [stderr] Downloaded itertools-num v0.1.3 [INFO] [stderr] Downloaded nalgebra-sparse v0.7.0 [INFO] [stderr] Downloaded pyo3-macros v0.17.1 [INFO] [stderr] Downloaded pyo3-macros-backend v0.17.1 [INFO] [stderr] Downloaded pyo3 v0.17.1 [INFO] [stderr] Downloaded heapless v0.7.14 [INFO] [stderr] Downloaded thiserror-impl v1.0.28 [INFO] [stderr] Downloaded wkt v0.10.3 [INFO] [stderr] Downloaded thiserror v1.0.28 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:9042d5c95763f71f7b0904716b98ccadf9fc47b0f382ee962aaaed2ac70c9b8d" "/opt/rustwide/cargo-home/bin/cargo" "+1.66.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 73d56746b290871dbcccb49398ea14ec909135e109702d90885d5d6216d18f98 [INFO] running `Command { std: "docker" "start" "-a" "73d56746b290871dbcccb49398ea14ec909135e109702d90885d5d6216d18f98", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "73d56746b290871dbcccb49398ea14ec909135e109702d90885d5d6216d18f98", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "73d56746b290871dbcccb49398ea14ec909135e109702d90885d5d6216d18f98", kill_on_drop: false }` [INFO] [stdout] 73d56746b290871dbcccb49398ea14ec909135e109702d90885d5d6216d18f98 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:9042d5c95763f71f7b0904716b98ccadf9fc47b0f382ee962aaaed2ac70c9b8d" "/opt/rustwide/cargo-home/bin/cargo" "+1.66.0" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 7313d6e5cf6b2677eb73d1d527a9854ba454641d78c48b3655e78809b1e28cf3 [INFO] running `Command { std: "docker" "start" "-a" "7313d6e5cf6b2677eb73d1d527a9854ba454641d78c48b3655e78809b1e28cf3", kill_on_drop: false }` [INFO] [stderr] warning: unused manifest key: target.x86_64-apple-darwin.rustflags [INFO] [stderr] Compiling libm v0.2.1 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Checking cfg-if v1.0.0 [INFO] [stderr] Checking scopeguard v1.1.0 [INFO] [stderr] Compiling syn v1.0.74 [INFO] [stderr] Compiling target-lexicon v0.12.3 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling memoffset v0.6.5 [INFO] [stderr] Compiling crossbeam-utils v0.8.5 [INFO] [stderr] Compiling semver v1.0.10 [INFO] [stderr] Checking smallvec v1.6.1 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Compiling libc v0.2.99 [INFO] [stderr] Compiling once_cell v1.8.0 [INFO] [stderr] Compiling crossbeam-epoch v0.9.5 [INFO] [stderr] Compiling rayon-core v1.9.3 [INFO] [stderr] Checking lock_api v0.4.4 [INFO] [stderr] Compiling num-rational v0.4.0 [INFO] [stderr] Checking matrixmultiply v0.3.2 [INFO] [stderr] Checking byteorder v1.4.3 [INFO] [stderr] Compiling paste v1.0.5 [INFO] [stderr] Compiling typenum v1.13.0 [INFO] [stderr] Checking ppv-lite86 v0.2.10 [INFO] [stderr] Checking spin v0.9.3 [INFO] [stderr] Compiling rayon v1.5.3 [INFO] [stderr] Checking hash32 v0.2.1 [INFO] [stderr] Checking either v1.6.1 [INFO] [stderr] Checking stable_deref_trait v1.2.0 [INFO] [stderr] Checking bytemuck v1.7.2 [INFO] [stderr] Checking instant v0.1.10 [INFO] [stderr] Compiling log v0.4.17 [INFO] [stderr] Compiling ahash v0.7.6 [INFO] [stderr] Checking crossbeam-channel v0.5.1 [INFO] [stderr] Compiling unindent v0.1.8 [INFO] [stderr] Compiling indexmap v1.7.0 [INFO] [stderr] Checking safe_arch v0.6.0 [INFO] [stderr] Checking getrandom v0.2.3 [INFO] [stderr] Compiling rustc_version v0.4.0 [INFO] [stderr] Checking crossbeam-deque v0.8.1 [INFO] [stderr] Checking num_cpus v1.13.0 [INFO] [stderr] Checking parking_lot_core v0.8.3 [INFO] [stderr] Checking rand_core v0.6.3 [INFO] [stderr] Compiling indoc v1.0.4 [INFO] [stderr] Checking hashbrown v0.11.2 [INFO] [stderr] Checking robust v0.2.3 [INFO] [stderr] Checking wide v0.7.0 [INFO] [stderr] Checking itertools v0.10.3 [INFO] [stderr] Checking geographiclib-rs v0.2.0 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Checking parking_lot v0.11.1 [INFO] [stderr] Checking permutation v0.4.0 [INFO] [stderr] Checking delaunator v1.0.1 [INFO] [stderr] Checking rand v0.8.5 [INFO] [stderr] Compiling heapless v0.7.14 [INFO] [stderr] Compiling pyo3-build-config v0.17.1 [INFO] [stderr] Checking approx v0.5.0 [INFO] [stderr] Checking num-complex v0.4.0 [INFO] [stderr] Checking noisy_float v0.2.0 [INFO] [stderr] Checking float_next_after v0.1.5 [INFO] [stderr] Checking kiddo v0.2.4 [INFO] [stderr] Checking ordered-float v3.0.0 [INFO] [stderr] Checking counter v0.5.5 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking rand_distr v0.4.1 [INFO] [stderr] Checking simba v0.5.1 [INFO] [stderr] Checking rstar v0.9.3 [INFO] [stderr] Checking simba v0.7.0 [INFO] [stderr] Checking geo-types v0.7.7 [INFO] [stderr] Checking geo v0.23.0 [INFO] [stderr] Compiling pyo3-ffi v0.17.1 [INFO] [stderr] Compiling pyo3 v0.17.1 [INFO] [stderr] Checking ndarray v0.15.4 [INFO] [stderr] Compiling pyo3-macros-backend v0.17.1 [INFO] [stderr] Compiling nalgebra-macros v0.1.0 [INFO] [stderr] Compiling thiserror-impl v1.0.28 [INFO] [stderr] Compiling pyo3-macros v0.17.1 [INFO] [stderr] Checking ndarray-stats v0.5.0 [INFO] [stderr] Checking thiserror v1.0.28 [INFO] [stderr] Checking wkt v0.10.3 [INFO] [stderr] Checking nalgebra v0.27.1 [INFO] [stderr] Checking nalgebra v0.31.0 [INFO] [stderr] Checking numpy v0.17.2 [INFO] [stderr] Checking statrs v0.15.0 [INFO] [stderr] Checking nalgebra-sparse v0.7.0 [INFO] [stderr] Documenting spatialtis_core v0.2.3 (/opt/rustwide/workdir) [INFO] [stdout] warning: unresolved link to `int` [INFO] [stdout] --> src/cell_interaction.rs:141:5 [INFO] [stdout] | [INFO] [stdout] 141 | / /// Bootstrap functions [INFO] [stdout] 142 | | /// [INFO] [stdout] 143 | | /// If method is 'pval', 1.0 means association, -1.0 means avoidance, 0.0 means insignificance. [INFO] [stdout] 144 | | /// If method is 'zscore', results is the exact z-score value. [INFO] [stdout] ... | [INFO] [stdout] 155 | | /// List of tuples, eg.('a', 'b', 1.0), the type a and type b has a relationship as association [INFO] [stdout] 156 | | /// [INFO] [stdout] | |_______^ [INFO] [stdout] | [INFO] [stdout] = note: the link appears in this line: [INFO] [stdout] [INFO] [stdout] neighbors: List[List[int]]; eg. {1:[4,5], 2:[6,7]}, cell at index 1 has neighbor cells from index 4 and 5 [INFO] [stdout] ^^^ [INFO] [stdout] = note: no item named `int` in scope [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] = note: `#[warn(rustdoc::broken_intra_doc_links)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `4,5` [INFO] [stdout] --> src/cell_interaction.rs:141:5 [INFO] [stdout] | [INFO] [stdout] 141 | / /// Bootstrap functions [INFO] [stdout] 142 | | /// [INFO] [stdout] 143 | | /// If method is 'pval', 1.0 means association, -1.0 means avoidance, 0.0 means insignificance. [INFO] [stdout] 144 | | /// If method is 'zscore', results is the exact z-score value. [INFO] [stdout] ... | [INFO] [stdout] 155 | | /// List of tuples, eg.('a', 'b', 1.0), the type a and type b has a relationship as association [INFO] [stdout] 156 | | /// [INFO] [stdout] | |_______^ [INFO] [stdout] | [INFO] [stdout] = note: the link appears in this line: [INFO] [stdout] [INFO] [stdout] neighbors: List[List[int]]; eg. {1:[4,5], 2:[6,7]}, cell at index 1 has neighbor cells from index 4 and 5 [INFO] [stdout] ^^^ [INFO] [stdout] = note: no item named `4,5` in scope [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `6,7` [INFO] [stdout] --> src/cell_interaction.rs:141:5 [INFO] [stdout] | [INFO] [stdout] 141 | / /// Bootstrap functions [INFO] [stdout] 142 | | /// [INFO] [stdout] 143 | | /// If method is 'pval', 1.0 means association, -1.0 means avoidance, 0.0 means insignificance. [INFO] [stdout] 144 | | /// If method is 'zscore', results is the exact z-score value. [INFO] [stdout] ... | [INFO] [stdout] 155 | | /// List of tuples, eg.('a', 'b', 1.0), the type a and type b has a relationship as association [INFO] [stdout] 156 | | /// [INFO] [stdout] | |_______^ [INFO] [stdout] | [INFO] [stdout] = note: the link appears in this line: [INFO] [stdout] [INFO] [stdout] neighbors: List[List[int]]; eg. {1:[4,5], 2:[6,7]}, cell at index 1 has neighbor cells from index 4 and 5 [INFO] [stdout] ^^^ [INFO] [stdout] = note: no item named `6,7` in scope [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 3 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [optimized + debuginfo] target(s) in 17.22s [INFO] running `Command { std: "docker" "inspect" "7313d6e5cf6b2677eb73d1d527a9854ba454641d78c48b3655e78809b1e28cf3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7313d6e5cf6b2677eb73d1d527a9854ba454641d78c48b3655e78809b1e28cf3", kill_on_drop: false }` [INFO] [stdout] 7313d6e5cf6b2677eb73d1d527a9854ba454641d78c48b3655e78809b1e28cf3 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "RUSTC_BOOTSTRAP=1" "-e" "DOCS_RS=1" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:9042d5c95763f71f7b0904716b98ccadf9fc47b0f382ee962aaaed2ac70c9b8d" "/opt/rustwide/cargo-home/bin/cargo" "+1.66.0" "rustdoc" "--lib" "-Zrustdoc-map" "-Z" "unstable-options" "--config" "build.rustdocflags=[\"-Z\", \"unstable-options\", \"--document-private-items\"]" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 8e5f47deec985b314d0f2bc1f541c2024fa02f47bc405e58a843b433d31ca959 [INFO] running `Command { std: "docker" "start" "-a" "8e5f47deec985b314d0f2bc1f541c2024fa02f47bc405e58a843b433d31ca959", kill_on_drop: false }` [INFO] [stderr] warning: unused manifest key: target.x86_64-apple-darwin.rustflags [INFO] [stderr] Documenting spatialtis_core v0.2.3 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [optimized + debuginfo] target(s) in 1.41s [INFO] running `Command { std: "docker" "inspect" "8e5f47deec985b314d0f2bc1f541c2024fa02f47bc405e58a843b433d31ca959", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "8e5f47deec985b314d0f2bc1f541c2024fa02f47bc405e58a843b433d31ca959", kill_on_drop: false }` [INFO] [stdout] 8e5f47deec985b314d0f2bc1f541c2024fa02f47bc405e58a843b433d31ca959