[INFO] fetching crate sigalign 0.1.0... [INFO] documenting sigalign-0.1.0 against 1.64.0 for beta-1.65-rustdoc-1 [INFO] extracting crate sigalign 0.1.0 into /workspace/builds/worker-0/source [INFO] validating manifest of crates.io crate sigalign 0.1.0 on toolchain 1.64.0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.64.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate sigalign 0.1.0 [INFO] finished tweaking crates.io crate sigalign 0.1.0 [INFO] tweaked toml for crates.io crate sigalign 0.1.0 written to /workspace/builds/worker-0/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.64.0" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.64.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded triple_accel v0.4.0 [INFO] [stderr] Downloaded bio-types v0.13.0 [INFO] [stderr] Downloaded fm-index v0.1.2 [INFO] [stderr] Downloaded simba v0.5.1 [INFO] [stderr] Downloaded statrs v0.15.0 [INFO] [stderr] Downloaded nalgebra v0.27.1 [INFO] [stderr] Downloaded fid v0.1.7 [INFO] [stderr] Downloaded libdivsufsort-rs v0.1.1 [INFO] [stderr] Downloaded bio v0.37.1 [INFO] [stderr] Downloaded bio v0.39.2 [INFO] [stderr] Downloaded lt-fm-index v0.4.2 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3d1cd00eb6e6ea2a7969240779edeaeff35b24be85036c63b883ba933028a15f" "/opt/rustwide/cargo-home/bin/cargo" "+1.64.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 3a610a45f9854678f21a0b1e9c9262450cad292c248518b166f3cb47e3c021ad [INFO] running `Command { std: "docker" "start" "-a" "3a610a45f9854678f21a0b1e9c9262450cad292c248518b166f3cb47e3c021ad", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "3a610a45f9854678f21a0b1e9c9262450cad292c248518b166f3cb47e3c021ad", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "3a610a45f9854678f21a0b1e9c9262450cad292c248518b166f3cb47e3c021ad", kill_on_drop: false }` [INFO] [stdout] 3a610a45f9854678f21a0b1e9c9262450cad292c248518b166f3cb47e3c021ad [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3d1cd00eb6e6ea2a7969240779edeaeff35b24be85036c63b883ba933028a15f" "/opt/rustwide/cargo-home/bin/cargo" "+1.64.0" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 2a064c297b67778bdf8ce901dca114b042558ed8fc03e8195ef30ece89546067 [INFO] running `Command { std: "docker" "start" "-a" "2a064c297b67778bdf8ce901dca114b042558ed8fc03e8195ef30ece89546067", kill_on_drop: false }` [INFO] [stderr] Compiling syn v1.0.101 [INFO] [stderr] Compiling libm v0.2.5 [INFO] [stderr] Compiling rustversion v1.0.9 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling paste v1.0.9 [INFO] [stderr] Compiling unicode-segmentation v1.10.0 [INFO] [stderr] Compiling thiserror v1.0.37 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Checking regex-automata v0.1.10 [INFO] [stderr] Compiling heck v0.4.0 [INFO] [stderr] Compiling anyhow v1.0.65 [INFO] [stderr] Checking regex-syntax v0.6.27 [INFO] [stderr] Checking bit-vec v0.6.3 [INFO] [stderr] Checking either v1.8.0 [INFO] [stderr] Compiling vcpkg v0.2.15 [INFO] [stderr] Checking itoa v0.4.8 [INFO] [stderr] Checking fixedbitset v0.4.2 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking triple_accel v0.4.0 [INFO] [stderr] Compiling fid v0.1.7 [INFO] [stderr] Checking bytecount v0.6.3 [INFO] [stderr] Compiling bio v0.37.1 [INFO] [stderr] Checking fixedbitset v0.2.0 [INFO] [stderr] Checking strum v0.23.0 [INFO] [stderr] Checking fallible-iterator v0.2.0 [INFO] [stderr] Checking fallible-streaming-iterator v0.1.9 [INFO] [stderr] Checking strum v0.21.0 [INFO] [stderr] Compiling num-traits v0.2.15 [INFO] [stderr] Compiling num-integer v0.1.45 [INFO] [stderr] Compiling num-bigint v0.4.3 [INFO] [stderr] Compiling num-rational v0.4.1 [INFO] [stderr] Compiling num-iter v0.1.43 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Compiling ahash v0.7.6 [INFO] [stderr] Checking fxhash v0.2.1 [INFO] [stderr] Checking matrixmultiply v0.3.2 [INFO] [stderr] Checking itertools v0.10.5 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Checking bit-set v0.5.3 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling heck v0.3.3 [INFO] [stderr] Compiling libdivsufsort-rs v0.1.1 [INFO] [stderr] Checking getrandom v0.2.7 [INFO] [stderr] Checking aho-corasick v0.7.19 [INFO] [stderr] Checking csv-core v0.1.10 [INFO] [stderr] Checking petgraph v0.6.2 [INFO] [stderr] Checking petgraph v0.5.1 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking rand_core v0.6.4 [INFO] [stderr] Compiling libsqlite3-sys v0.23.2 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Checking hashbrown v0.11.2 [INFO] [stderr] Checking rand v0.8.5 [INFO] [stderr] Checking hashlink v0.7.0 [INFO] [stderr] Checking regex v1.6.0 [INFO] [stderr] Checking num-complex v0.4.2 [INFO] [stderr] Checking approx v0.5.1 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking ordered-float v1.1.1 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Checking simba v0.5.1 [INFO] [stderr] Checking ndarray v0.15.6 [INFO] [stderr] Checking num v0.4.0 [INFO] [stderr] Compiling serde_derive v1.0.145 [INFO] [stderr] Compiling thiserror-impl v1.0.37 [INFO] [stderr] Compiling nalgebra-macros v0.1.0 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Compiling enum-map-derive v0.6.0 [INFO] [stderr] Compiling strum_macros v0.24.3 [INFO] [stderr] Compiling getset v0.1.2 [INFO] [stderr] Compiling strum_macros v0.23.1 [INFO] [stderr] Compiling strum_macros v0.21.1 [INFO] [stderr] Checking enum-map v1.1.1 [INFO] [stderr] Checking nalgebra v0.27.1 [INFO] [stderr] Checking bio-types v0.13.0 [INFO] [stderr] Checking serde v1.0.145 [INFO] [stderr] Checking rusqlite v0.26.3 [INFO] [stderr] Checking bstr v0.2.17 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking multimap v0.8.3 [INFO] [stderr] Checking bincode v1.3.3 [INFO] [stderr] Checking serde_json v1.0.85 [INFO] [stderr] Checking fm-index v0.1.2 [INFO] [stderr] Checking csv v1.1.6 [INFO] [stderr] Checking statrs v0.15.0 [INFO] [stderr] Checking bio v0.39.2 [INFO] [stderr] Checking lt-fm-index v0.4.2 [INFO] [stderr] Documenting sigalign v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unresolved link to `super::SequenceRecords` [INFO] [stdout] --> src/deprecated/database/sequence_provider/memory.rs:10:6 [INFO] [stdout] | [INFO] [stdout] 10 | /// [super::SequenceRecords] that stores sequences in memory. [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ no item named `SequenceRecords` in module `sequence_provider` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(rustdoc::broken_intra_doc_links)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 1 warning emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 50.32s [INFO] running `Command { std: "docker" "inspect" "2a064c297b67778bdf8ce901dca114b042558ed8fc03e8195ef30ece89546067", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2a064c297b67778bdf8ce901dca114b042558ed8fc03e8195ef30ece89546067", kill_on_drop: false }` [INFO] [stdout] 2a064c297b67778bdf8ce901dca114b042558ed8fc03e8195ef30ece89546067 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "RUSTC_BOOTSTRAP=1" "-e" "DOCS_RS=1" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3d1cd00eb6e6ea2a7969240779edeaeff35b24be85036c63b883ba933028a15f" "/opt/rustwide/cargo-home/bin/cargo" "+1.64.0" "rustdoc" "--lib" "-Zrustdoc-map" "-Z" "unstable-options" "--config" "build.rustdocflags=[\"-Z\", \"unstable-options\", \"--document-private-items\"]" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] b48c61356c4514a46c902cc3638b204d1e6cc970d56dc71ae0cdfd31eabd20ee [INFO] running `Command { std: "docker" "start" "-a" "b48c61356c4514a46c902cc3638b204d1e6cc970d56dc71ae0cdfd31eabd20ee", kill_on_drop: false }` [INFO] [stderr] Documenting sigalign v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unresolved link to `super::SequenceRecords` [INFO] [stdout] --> src/deprecated/database/sequence_provider/memory.rs:10:6 [INFO] [stdout] | [INFO] [stdout] 10 | /// [super::SequenceRecords] that stores sequences in memory. [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ no item named `SequenceRecords` in module `sequence_provider` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(rustdoc::broken_intra_doc_links)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 1 warning emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 3.46s [INFO] running `Command { std: "docker" "inspect" "b48c61356c4514a46c902cc3638b204d1e6cc970d56dc71ae0cdfd31eabd20ee", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b48c61356c4514a46c902cc3638b204d1e6cc970d56dc71ae0cdfd31eabd20ee", kill_on_drop: false }` [INFO] [stdout] b48c61356c4514a46c902cc3638b204d1e6cc970d56dc71ae0cdfd31eabd20ee