[INFO] fetching crate fasten 0.4.4... [INFO] testing fasten-0.4.4 against beta-2022-09-25 for beta-1.65-1 [INFO] extracting crate fasten 0.4.4 into /workspace/builds/worker-6/source [INFO] validating manifest of crates.io crate fasten 0.4.4 on toolchain beta-2022-09-25 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-09-25" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate fasten 0.4.4 [INFO] finished tweaking crates.io crate fasten 0.4.4 [INFO] tweaked toml for crates.io crate fasten 0.4.4 written to /workspace/builds/worker-6/source/Cargo.toml [INFO] crate crates.io crate fasten 0.4.4 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-09-25" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3d1cd00eb6e6ea2a7969240779edeaeff35b24be85036c63b883ba933028a15f" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-09-25" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 4c3a430396167b6aefd120ff7e4a49c4d82ae7c5415a7049728e7ac3475b93bc [INFO] running `Command { std: "docker" "start" "-a" "4c3a430396167b6aefd120ff7e4a49c4d82ae7c5415a7049728e7ac3475b93bc", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "4c3a430396167b6aefd120ff7e4a49c4d82ae7c5415a7049728e7ac3475b93bc", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4c3a430396167b6aefd120ff7e4a49c4d82ae7c5415a7049728e7ac3475b93bc", kill_on_drop: false }` [INFO] [stdout] 4c3a430396167b6aefd120ff7e4a49c4d82ae7c5415a7049728e7ac3475b93bc [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3d1cd00eb6e6ea2a7969240779edeaeff35b24be85036c63b883ba933028a15f" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-09-25" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 0e3f36f52b2d5685fc8262da9609e93e8816c596ee4164b83284f59cc8bca43a [INFO] running `Command { std: "docker" "start" "-a" "0e3f36f52b2d5685fc8262da9609e93e8816c596ee4164b83284f59cc8bca43a", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.101 [INFO] [stderr] Compiling cc v1.0.69 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling pkg-config v0.3.19 [INFO] [stderr] Compiling memchr v2.4.1 [INFO] [stderr] Compiling rustc-serialize v0.3.24 [INFO] [stderr] Compiling crc32fast v1.2.1 [INFO] [stderr] Compiling num-iter v0.1.42 [INFO] [stderr] Compiling owning_ref v0.2.4 [INFO] [stderr] Compiling regex v0.2.11 [INFO] [stderr] Compiling ucd-util v0.1.8 [INFO] [stderr] Compiling thread_local v0.3.6 [INFO] [stderr] Compiling futures v0.1.31 [INFO] [stderr] Compiling crossbeam v0.2.12 [INFO] [stderr] Compiling utf8-ranges v1.0.4 [INFO] [stderr] Compiling regex-syntax v0.5.6 [INFO] [stderr] Compiling smallvec v0.3.4 [INFO] [stderr] Compiling getopts v0.2.21 [INFO] [stderr] Compiling rand v0.4.6 [INFO] [stderr] Compiling thread-id v3.3.0 [INFO] [stderr] Compiling time v0.1.44 [INFO] [stderr] Compiling num_cpus v1.13.0 [INFO] [stderr] Compiling aho-corasick v0.6.10 [INFO] [stderr] Compiling lz4-sys v1.9.2 [INFO] [stderr] Compiling libz-sys v1.1.3 [INFO] [stderr] Compiling threadpool v1.8.1 [INFO] [stderr] Compiling num-complex v0.1.43 [INFO] [stderr] Compiling parking_lot_core v0.2.14 [INFO] [stderr] Compiling rand v0.3.23 [INFO] [stderr] Compiling num-bigint v0.1.44 [INFO] [stderr] Compiling flate2 v1.0.20 [INFO] [stderr] Compiling parking_lot v0.3.8 [INFO] [stderr] Compiling multiqueue v0.3.2 [INFO] [stderr] Compiling bam v0.1.4 [INFO] [stderr] Compiling num-rational v0.1.42 [INFO] [stderr] Compiling num v0.1.42 [INFO] [stderr] Compiling statistical v0.1.1 [INFO] [stderr] Compiling lz4 v1.23.2 [INFO] [stderr] Compiling fastq v0.6.0 [INFO] [stderr] Compiling fasten v0.4.4 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 39.13s [INFO] running `Command { std: "docker" "inspect" "0e3f36f52b2d5685fc8262da9609e93e8816c596ee4164b83284f59cc8bca43a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0e3f36f52b2d5685fc8262da9609e93e8816c596ee4164b83284f59cc8bca43a", kill_on_drop: false }` [INFO] [stdout] 0e3f36f52b2d5685fc8262da9609e93e8816c596ee4164b83284f59cc8bca43a [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3d1cd00eb6e6ea2a7969240779edeaeff35b24be85036c63b883ba933028a15f" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-09-25" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 45518a8c2514245a99255bc50935d1511abf0e17a5a3486ae3ab02f8ccea32b3 [INFO] running `Command { std: "docker" "start" "-a" "45518a8c2514245a99255bc50935d1511abf0e17a5a3486ae3ab02f8ccea32b3", kill_on_drop: false }` [INFO] [stderr] Compiling fasten v0.4.4 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 2.75s [INFO] running `Command { std: "docker" "inspect" "45518a8c2514245a99255bc50935d1511abf0e17a5a3486ae3ab02f8ccea32b3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "45518a8c2514245a99255bc50935d1511abf0e17a5a3486ae3ab02f8ccea32b3", kill_on_drop: false }` [INFO] [stdout] 45518a8c2514245a99255bc50935d1511abf0e17a5a3486ae3ab02f8ccea32b3 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3d1cd00eb6e6ea2a7969240779edeaeff35b24be85036c63b883ba933028a15f" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-09-25" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] f04f436e4e1ec1abecdead5b3a132f48a2029a6dc17cf21f371d4a728907a4eb [INFO] running `Command { std: "docker" "start" "-a" "f04f436e4e1ec1abecdead5b3a132f48a2029a6dc17cf21f371d4a728907a4eb", kill_on_drop: false }` [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.05s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/fasten-7fb8a364286087ef) [INFO] [stdout] [INFO] [stdout] running 4 tests [INFO] [stdout] test io::fastq::test_the_fast_reader ... ok [INFO] [stdout] test io::seq::test_cleanable ... ok [INFO] [stdout] test io::fastq::test_the_careful_reader ... ok [INFO] [stdout] test io::seq::test_new_seq ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/fasten_clean.rs (/opt/rustwide/target/debug/deps/fasten_clean-78dc6af3d35e9399) [INFO] [stdout] [INFO] [stdout] running 2 tests [INFO] [stdout] test test_clean_entry ... ok [INFO] [stderr] Running unittests src/bin/fasten_combine.rs (/opt/rustwide/target/debug/deps/fasten_combine-49f5715762ab905b) [INFO] [stdout] test test_clean_entry_basic ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 2 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/fasten_convert.rs (/opt/rustwide/target/debug/deps/fasten_convert-46ac5614640f008b) [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/fasten_kmer.rs (/opt/rustwide/target/debug/deps/fasten_kmer-2e9ff6f619bf4c02) [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 2 tests [INFO] [stdout] test test_kmer_counting_4mers ... ok [INFO] [stdout] test test_kmer_counting_homopolymers ... ok [INFO] [stderr] Running unittests src/bin/fasten_metrics.rs (/opt/rustwide/target/debug/deps/fasten_metrics-e36104c352ab4afd) [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/fasten_mutate.rs (/opt/rustwide/target/debug/deps/fasten_mutate-dfb351d5e6ad5e4e) [INFO] [stdout] test result: ok. 2 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stdout] test test_average_quality ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/fasten_pe.rs (/opt/rustwide/target/debug/deps/fasten_pe-b8ba5b39c72609ab) [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/fasten_progress.rs (/opt/rustwide/target/debug/deps/fasten_progress-3a30233c2a928bdb) [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/fasten_quality_filter.rs (/opt/rustwide/target/debug/deps/fasten_quality_filter-39bc1c1c1b805fae) [INFO] [stdout] running 0 tests [INFO] [stderr] Running unittests src/bin/fasten_randomize.rs (/opt/rustwide/target/debug/deps/fasten_randomize-2ff64e0e1fb15868) [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/fasten_regex.rs (/opt/rustwide/target/debug/deps/fasten_regex-3ba5e105f1125089) [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/fasten_replace.rs (/opt/rustwide/target/debug/deps/fasten_replace-890e779f4a2469a2) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/fasten_sample.rs (/opt/rustwide/target/debug/deps/fasten_sample-7e8b56fb6c200b6a) [INFO] [stdout] running 0 tests [INFO] [stderr] Running unittests src/bin/fasten_shuffle.rs (/opt/rustwide/target/debug/deps/fasten_shuffle-f21dc1a7f5f5a8ee) [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/fasten_sort.rs (/opt/rustwide/target/debug/deps/fasten_sort-2e8ede9928fe5738) [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/fasten_straighten.rs (/opt/rustwide/target/debug/deps/fasten_straighten-9850b38624584314) [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stdout] test test_sort_fastq_basic ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stderr] Running unittests src/bin/fasten_trim.rs (/opt/rustwide/target/debug/deps/fasten_trim-74c38165fca751e2) [INFO] [stdout] test challenge_dataset ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/fasten_validate.rs (/opt/rustwide/target/debug/deps/fasten_validate-8303f29aef61a4b0) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Doc-tests fasten [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "f04f436e4e1ec1abecdead5b3a132f48a2029a6dc17cf21f371d4a728907a4eb", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f04f436e4e1ec1abecdead5b3a132f48a2029a6dc17cf21f371d4a728907a4eb", kill_on_drop: false }` [INFO] [stdout] f04f436e4e1ec1abecdead5b3a132f48a2029a6dc17cf21f371d4a728907a4eb