[INFO] fetching crate openbabel-sys 0.1.8+openbabel-3.1.1... [INFO] testing openbabel-sys-0.1.8+openbabel-3.1.1 against beta-2022-08-09 for beta-1.64-2 [INFO] extracting crate openbabel-sys 0.1.8+openbabel-3.1.1 into /workspace/builds/worker-5/source [INFO] validating manifest of crates.io crate openbabel-sys 0.1.8+openbabel-3.1.1 on toolchain beta-2022-08-09 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-08-09" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate openbabel-sys 0.1.8+openbabel-3.1.1 [INFO] finished tweaking crates.io crate openbabel-sys 0.1.8+openbabel-3.1.1 [INFO] tweaked toml for crates.io crate openbabel-sys 0.1.8+openbabel-3.1.1 written to /workspace/builds/worker-5/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-08-09" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-08-09" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:824c28ce115f6b999260af6986f3384c158e782489540e41c0b698ca1d9fd927" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-08-09" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] bf50c6296b142d6998c67869f88012406321deb9f96a37fdc41bbb749f3205d7 [INFO] running `Command { std: "docker" "start" "-a" "bf50c6296b142d6998c67869f88012406321deb9f96a37fdc41bbb749f3205d7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "bf50c6296b142d6998c67869f88012406321deb9f96a37fdc41bbb749f3205d7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "bf50c6296b142d6998c67869f88012406321deb9f96a37fdc41bbb749f3205d7", kill_on_drop: false }` [INFO] [stdout] bf50c6296b142d6998c67869f88012406321deb9f96a37fdc41bbb749f3205d7 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:824c28ce115f6b999260af6986f3384c158e782489540e41c0b698ca1d9fd927" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-08-09" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 9ca0a857e29d0ddedd6305f6a22a21741706f68eba8e24aed86a7bd068bb4e17 [INFO] running `Command { std: "docker" "start" "-a" "9ca0a857e29d0ddedd6305f6a22a21741706f68eba8e24aed86a7bd068bb4e17", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling cc v1.0.73 [INFO] [stderr] Compiling proc-macro2 v1.0.43 [INFO] [stderr] Compiling unicode-ident v1.0.3 [INFO] [stderr] Compiling quote v1.0.21 [INFO] [stderr] Compiling syn v1.0.99 [INFO] [stderr] Compiling scratch v1.0.2 [INFO] [stderr] Compiling cxxbridge-flags v1.0.73 [INFO] [stderr] Compiling unicode-width v0.1.9 [INFO] [stderr] Compiling termcolor v1.1.3 [INFO] [stderr] Compiling once_cell v1.13.0 [INFO] [stderr] Compiling fs_extra v1.2.0 [INFO] [stderr] Compiling codespan-reporting v0.11.1 [INFO] [stderr] Compiling link-cplusplus v1.0.6 [INFO] [stderr] Compiling cxx v1.0.73 [INFO] [stderr] Compiling cxx-build v1.0.73 [INFO] [stderr] Compiling cxxbridge-macro v1.0.73 [INFO] [stderr] Compiling openbabel-sys v0.1.8+openbabel-3.1.1 (/opt/rustwide/workdir) [INFO] [stderr] warning: In file included from openbabel/src/atom.cpp:26: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:833:43: warning: implicitly-declared 'OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 833 | {return new OBVibrationData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:835:23: note: because 'OpenBabel::OBVibrationData' has user-provided 'OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)' [INFO] [stderr] warning: 835 | OBVibrationData & operator=(const OBVibrationData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:878:37: warning: implicitly-declared 'OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 878 | {return new OBDOSData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:880:17: note: because 'OpenBabel::OBDOSData' has user-provided 'OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)' [INFO] [stderr] warning: 880 | OBDOSData & operator=(const OBDOSData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:925:41: warning: implicitly-declared 'OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 925 | {return new OBOrbitalData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:927:21: note: because 'OpenBabel::OBOrbitalData' has user-provided 'OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)' [INFO] [stderr] warning: 927 | OBOrbitalData & operator=(const OBOrbitalData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: In file included from openbabel/src/atom.cpp:26: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:985:54: warning: implicitly-declared 'OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 985 | {return new OBElectronicTransitionData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:987:34: note: because 'OpenBabel::OBElectronicTransitionData' has user-provided 'OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)' [INFO] [stderr] warning: 987 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: At global scope: [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-extra-tokens' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-c99-extensions' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-unused-private-field' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-reorder-ctor' [INFO] [stderr] warning: In file included from openbabel/src/bond.cpp:27: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:833:43: warning: implicitly-declared 'OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 833 | {return new OBVibrationData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:835:23: note: because 'OpenBabel::OBVibrationData' has user-provided 'OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)' [INFO] [stderr] warning: 835 | OBVibrationData & operator=(const OBVibrationData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:878:37: warning: implicitly-declared 'OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 878 | {return new OBDOSData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:880:17: note: because 'OpenBabel::OBDOSData' has user-provided 'OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)' [INFO] [stderr] warning: 880 | OBDOSData & operator=(const OBDOSData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:925:41: warning: implicitly-declared 'OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 925 | {return new OBOrbitalData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:927:21: note: because 'OpenBabel::OBOrbitalData' has user-provided 'OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)' [INFO] [stderr] warning: 927 | OBOrbitalData & operator=(const OBOrbitalData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: In file included from openbabel/src/bond.cpp:27: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:985:54: warning: implicitly-declared 'OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 985 | {return new OBElectronicTransitionData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:987:34: note: because 'OpenBabel::OBElectronicTransitionData' has user-provided 'OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)' [INFO] [stderr] warning: 987 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: At global scope: [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-extra-tokens' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-c99-extensions' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-unused-private-field' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-reorder-ctor' [INFO] [stderr] warning: In file included from openbabel/src/generic.cpp:30: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:833:43: warning: implicitly-declared 'OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 833 | {return new OBVibrationData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:835:23: note: because 'OpenBabel::OBVibrationData' has user-provided 'OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)' [INFO] [stderr] warning: 835 | OBVibrationData & operator=(const OBVibrationData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:878:37: warning: implicitly-declared 'OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 878 | {return new OBDOSData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:880:17: note: because 'OpenBabel::OBDOSData' has user-provided 'OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)' [INFO] [stderr] warning: 880 | OBDOSData & operator=(const OBDOSData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:925:41: warning: implicitly-declared 'OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 925 | {return new OBOrbitalData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:927:21: note: because 'OpenBabel::OBOrbitalData' has user-provided 'OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)' [INFO] [stderr] warning: 927 | OBOrbitalData & operator=(const OBOrbitalData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: In file included from openbabel/src/generic.cpp:30: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:985:54: warning: implicitly-declared 'OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 985 | {return new OBElectronicTransitionData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:987:34: note: because 'OpenBabel::OBElectronicTransitionData' has user-provided 'OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)' [INFO] [stderr] warning: 987 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: At global scope: [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-extra-tokens' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-c99-extensions' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-unused-private-field' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-reorder-ctor' [INFO] [stderr] warning: In file included from openbabel/src/graphsym.cpp:32: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:833:43: warning: implicitly-declared 'OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 833 | {return new OBVibrationData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:835:23: note: because 'OpenBabel::OBVibrationData' has user-provided 'OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)' [INFO] [stderr] warning: 835 | OBVibrationData & operator=(const OBVibrationData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:878:37: warning: implicitly-declared 'OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 878 | {return new OBDOSData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:880:17: note: because 'OpenBabel::OBDOSData' has user-provided 'OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)' [INFO] [stderr] warning: 880 | OBDOSData & operator=(const OBDOSData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:925:41: warning: implicitly-declared 'OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 925 | {return new OBOrbitalData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:927:21: note: because 'OpenBabel::OBOrbitalData' has user-provided 'OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)' [INFO] [stderr] warning: 927 | OBOrbitalData & operator=(const OBOrbitalData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: In file included from openbabel/src/graphsym.cpp:32: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:985:54: warning: implicitly-declared 'OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 985 | {return new OBElectronicTransitionData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:987:34: note: because 'OpenBabel::OBElectronicTransitionData' has user-provided 'OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)' [INFO] [stderr] warning: 987 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: At global scope: [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-extra-tokens' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-c99-extensions' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-unused-private-field' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-reorder-ctor' [INFO] [stderr] warning: In file included from openbabel/src/ring.cpp:28: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:833:43: warning: implicitly-declared 'OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 833 | {return new OBVibrationData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:835:23: note: because 'OpenBabel::OBVibrationData' has user-provided 'OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)' [INFO] [stderr] warning: 835 | OBVibrationData & operator=(const OBVibrationData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:878:37: warning: implicitly-declared 'OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 878 | {return new OBDOSData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:880:17: note: because 'OpenBabel::OBDOSData' has user-provided 'OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)' [INFO] [stderr] warning: 880 | OBDOSData & operator=(const OBDOSData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:925:41: warning: implicitly-declared 'OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 925 | {return new OBOrbitalData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:927:21: note: because 'OpenBabel::OBOrbitalData' has user-provided 'OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)' [INFO] [stderr] warning: 927 | OBOrbitalData & operator=(const OBOrbitalData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: In file included from openbabel/src/ring.cpp:28: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:985:54: warning: implicitly-declared 'OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 985 | {return new OBElectronicTransitionData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:987:34: note: because 'OpenBabel::OBElectronicTransitionData' has user-provided 'OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)' [INFO] [stderr] warning: 987 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: At global scope: [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-extra-tokens' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-c99-extensions' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-unused-private-field' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-reorder-ctor' [INFO] [stderr] warning: In file included from openbabel/src/obiter.cpp:26: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:833:43: warning: implicitly-declared 'OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 833 | {return new OBVibrationData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:835:23: note: because 'OpenBabel::OBVibrationData' has user-provided 'OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)' [INFO] [stderr] warning: 835 | OBVibrationData & operator=(const OBVibrationData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:878:37: warning: implicitly-declared 'OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 878 | {return new OBDOSData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:880:17: note: because 'OpenBabel::OBDOSData' has user-provided 'OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)' [INFO] [stderr] warning: 880 | OBDOSData & operator=(const OBDOSData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:925:41: warning: implicitly-declared 'OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 925 | {return new OBOrbitalData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:927:21: note: because 'OpenBabel::OBOrbitalData' has user-provided 'OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)' [INFO] [stderr] warning: 927 | OBOrbitalData & operator=(const OBOrbitalData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: In file included from openbabel/src/obiter.cpp:26: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:985:54: warning: implicitly-declared 'OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 985 | {return new OBElectronicTransitionData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:987:34: note: because 'OpenBabel::OBElectronicTransitionData' has user-provided 'OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)' [INFO] [stderr] warning: 987 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: In file included from openbabel/src/obiter.cpp:27: [INFO] [stderr] warning: openbabel/include/openbabel/obiter.h: In constructor 'OpenBabel::OBMolRingIter::OBMolRingIter(OpenBabel::OBMol*)': [INFO] [stderr] warning: openbabel/include/openbabel/obiter.h:375:12: warning: 'OpenBabel::OBMolRingIter::_parent' will be initialized after [-Wreorder] [INFO] [stderr] warning: 375 | OBMol *_parent; [INFO] [stderr] warning: | ^~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/obiter.h:374:13: warning: 'OpenBabel::OBRing* OpenBabel::OBMolRingIter::_ptr' [-Wreorder] [INFO] [stderr] warning: 374 | OBRing *_ptr; [INFO] [stderr] warning: | ^~~~ [INFO] [stderr] warning: openbabel/src/obiter.cpp:1022:3: warning: when initialized here [-Wreorder] [INFO] [stderr] warning: 1022 | OBMolRingIter::OBMolRingIter(OBMol *mol): _parent(mol), _ptr(nullptr) [INFO] [stderr] warning: | ^~~~~~~~~~~~~ [INFO] [stderr] warning: In file included from openbabel/src/obiter.cpp:27: [INFO] [stderr] warning: openbabel/include/openbabel/obiter.h: In constructor 'OpenBabel::OBMolRingIter::OBMolRingIter(OpenBabel::OBMol&)': [INFO] [stderr] warning: openbabel/include/openbabel/obiter.h:375:12: warning: 'OpenBabel::OBMolRingIter::_parent' will be initialized after [-Wreorder] [INFO] [stderr] warning: 375 | OBMol *_parent; [INFO] [stderr] warning: | ^~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/obiter.h:374:13: warning: 'OpenBabel::OBRing* OpenBabel::OBMolRingIter::_ptr' [-Wreorder] [INFO] [stderr] warning: 374 | OBRing *_ptr; [INFO] [stderr] warning: | ^~~~ [INFO] [stderr] warning: openbabel/src/obiter.cpp:1032:3: warning: when initialized here [-Wreorder] [INFO] [stderr] warning: 1032 | OBMolRingIter::OBMolRingIter(OBMol &mol): _parent(&mol), _ptr(nullptr) [INFO] [stderr] warning: | ^~~~~~~~~~~~~ [INFO] [stderr] warning: At global scope: [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-extra-tokens' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-c99-extensions' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-unused-private-field' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-reorder-ctor' [INFO] [stderr] warning: In file included from openbabel/include/openbabel/rotamer.h:27, [INFO] [stderr] warning: from openbabel/src/builder.cpp:29: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:833:43: warning: implicitly-declared 'OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 833 | {return new OBVibrationData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:835:23: note: because 'OpenBabel::OBVibrationData' has user-provided 'OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)' [INFO] [stderr] warning: 835 | OBVibrationData & operator=(const OBVibrationData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:878:37: warning: implicitly-declared 'OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 878 | {return new OBDOSData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:880:17: note: because 'OpenBabel::OBDOSData' has user-provided 'OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)' [INFO] [stderr] warning: 880 | OBDOSData & operator=(const OBDOSData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:925:41: warning: implicitly-declared 'OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 925 | {return new OBOrbitalData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:927:21: note: because 'OpenBabel::OBOrbitalData' has user-provided 'OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)' [INFO] [stderr] warning: 927 | OBOrbitalData & operator=(const OBOrbitalData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: In file included from openbabel/include/openbabel/rotamer.h:27, [INFO] [stderr] warning: from openbabel/src/builder.cpp:29: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:985:54: warning: implicitly-declared 'OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 985 | {return new OBElectronicTransitionData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:987:34: note: because 'OpenBabel::OBElectronicTransitionData' has user-provided 'OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)' [INFO] [stderr] warning: 987 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: At global scope: [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-extra-tokens' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-c99-extensions' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-unused-private-field' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-reorder-ctor' [INFO] [stderr] warning: In file included from openbabel/src/data.cpp:37: [INFO] [stderr] warning: src/data/atomizationenergies.h:12:23: warning: extra tokens at end of #ifndef directive [INFO] [stderr] warning: 12 | #ifndef OB_ATOMIZATION-ENERGIES_H [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: src/data/atomizationenergies.h:13:9: warning: ISO C++11 requires whitespace after the macro name [INFO] [stderr] warning: 13 | #define OB_ATOMIZATION-ENERGIES_H [INFO] [stderr] warning: | ^~~~~~~~~~~~~~ [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-extra-tokens' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-c99-extensions' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-unused-private-field' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-reorder-ctor' [INFO] [stderr] warning: In file included from openbabel/src/descriptor.cpp:21: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:833:43: warning: implicitly-declared 'OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 833 | {return new OBVibrationData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:835:23: note: because 'OpenBabel::OBVibrationData' has user-provided 'OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)' [INFO] [stderr] warning: 835 | OBVibrationData & operator=(const OBVibrationData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:878:37: warning: implicitly-declared 'OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 878 | {return new OBDOSData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:880:17: note: because 'OpenBabel::OBDOSData' has user-provided 'OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)' [INFO] [stderr] warning: 880 | OBDOSData & operator=(const OBDOSData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:925:41: warning: implicitly-declared 'OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 925 | {return new OBOrbitalData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:927:21: note: because 'OpenBabel::OBOrbitalData' has user-provided 'OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)' [INFO] [stderr] warning: 927 | OBOrbitalData & operator=(const OBOrbitalData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: In file included from openbabel/src/descriptor.cpp:21: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:985:54: warning: implicitly-declared 'OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 985 | {return new OBElectronicTransitionData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:987:34: note: because 'OpenBabel::OBElectronicTransitionData' has user-provided 'OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)' [INFO] [stderr] warning: 987 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: At global scope: [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-extra-tokens' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-c99-extensions' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-unused-private-field' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-reorder-ctor' [INFO] [stderr] warning: openbabel/src/typer.cpp: In function 'bool OpenBabel::AssignOBAromaticityModel(OpenBabel::OBAtom*, int&, int&)': [INFO] [stderr] warning: openbabel/src/typer.cpp:484:9: warning: this statement may fall through [-Wimplicit-fallthrough=] [INFO] [stderr] warning: 484 | if (val == 2 && deg == 2) { [INFO] [stderr] warning: | ^~ [INFO] [stderr] warning: openbabel/src/typer.cpp:487:7: note: here [INFO] [stderr] warning: 487 | case 1: [INFO] [stderr] warning: | ^~~~ [INFO] [stderr] warning: At global scope: [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-extra-tokens' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-c99-extensions' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-unused-private-field' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-reorder-ctor' [INFO] [stderr] warning: openbabel/src/parsmart.cpp: In function 'int OpenBabel::CreateAtom(OpenBabel::Pattern*, OpenBabel::AtomExpr*, int, int)': [INFO] [stderr] warning: openbabel/src/parsmart.cpp:446:15: warning: variable 'size' set but not used [-Wunused-but-set-variable] [INFO] [stderr] warning: 446 | int index,size; [INFO] [stderr] warning: | ^~~~ [INFO] [stderr] warning: openbabel/src/parsmart.cpp: In function 'int OpenBabel::CreateBond(OpenBabel::Pattern*, OpenBabel::BondExpr*, int, int)': [INFO] [stderr] warning: openbabel/src/parsmart.cpp:478:15: warning: variable 'size' set but not used [-Wunused-but-set-variable] [INFO] [stderr] warning: 478 | int index,size; [INFO] [stderr] warning: | ^~~~ [INFO] [stderr] warning: At global scope: [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-extra-tokens' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-c99-extensions' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-unused-private-field' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-reorder-ctor' [INFO] [stderr] warning: In file included from openbabel/include/openbabel/rotamer.h:27, [INFO] [stderr] warning: from openbabel/src/mol.cpp:25: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:833:43: warning: implicitly-declared 'OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 833 | {return new OBVibrationData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:835:23: note: because 'OpenBabel::OBVibrationData' has user-provided 'OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)' [INFO] [stderr] warning: 835 | OBVibrationData & operator=(const OBVibrationData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:878:37: warning: implicitly-declared 'OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 878 | {return new OBDOSData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:880:17: note: because 'OpenBabel::OBDOSData' has user-provided 'OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)' [INFO] [stderr] warning: 880 | OBDOSData & operator=(const OBDOSData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:925:41: warning: implicitly-declared 'OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 925 | {return new OBOrbitalData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:927:21: note: because 'OpenBabel::OBOrbitalData' has user-provided 'OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)' [INFO] [stderr] warning: 927 | OBOrbitalData & operator=(const OBOrbitalData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: In file included from openbabel/include/openbabel/rotamer.h:27, [INFO] [stderr] warning: from openbabel/src/mol.cpp:25: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:985:54: warning: implicitly-declared 'OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 985 | {return new OBElectronicTransitionData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:987:34: note: because 'OpenBabel::OBElectronicTransitionData' has user-provided 'OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)' [INFO] [stderr] warning: 987 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/src/mol.cpp: In member function 'unsigned int OpenBabel::OBMol::NumHvyAtoms() const': [INFO] [stderr] warning: openbabel/src/mol.cpp:809:36: warning: unnecessary parentheses in declaration of 'i' [-Wparentheses] [INFO] [stderr] warning: 809 | vector::const_iterator(i); [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/src/mol.cpp: In member function 'bool OpenBabel::OBMol::CopySubstructure(OpenBabel::OBMol&, OpenBabel::OBBitVec*, OpenBabel::OBBitVec*, unsigned int, std::vector*, std::vector*)': [INFO] [stderr] warning: openbabel/src/mol.cpp:4210:59: warning: enumeral and non-enumeral type in conditional expression [-Wextra] [INFO] [stderr] warning: 4210 | newcfg.begin = cfg.begin == OBStereo::ImplicitRef ? OBStereo::ImplicitRef : AtomMap[GetAtomById(cfg.begin)]->GetId(); [INFO] [stderr] warning: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel/src/mol.cpp:4211:55: warning: enumeral and non-enumeral type in conditional expression [-Wextra] [INFO] [stderr] warning: 4211 | newcfg.end = cfg.end == OBStereo::ImplicitRef ? OBStereo::ImplicitRef : AtomMap[GetAtomById(cfg.end)]->GetId(); [INFO] [stderr] warning: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel/src/mol.cpp:4214:60: warning: enumeral and non-enumeral type in conditional expression [-Wextra] [INFO] [stderr] warning: 4214 | OBStereo::Ref ref = *ri == OBStereo::ImplicitRef ? OBStereo::ImplicitRef : AtomMap[GetAtomById(*ri)]->GetId(); [INFO] [stderr] warning: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel/src/mol.cpp:4257:57: warning: enumeral and non-enumeral type in conditional expression [-Wextra] [INFO] [stderr] warning: 4257 | newcfg.from = cfg.from == OBStereo::ImplicitRef ? OBStereo::ImplicitRef : AtomMap[GetAtomById(cfg.from)]->GetId(); [INFO] [stderr] warning: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel/src/mol.cpp:4260:60: warning: enumeral and non-enumeral type in conditional expression [-Wextra] [INFO] [stderr] warning: 4260 | OBStereo::Ref ref = *ri == OBStereo::ImplicitRef ? OBStereo::ImplicitRef : AtomMap[GetAtomById(*ri)]->GetId(); [INFO] [stderr] warning: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: At global scope: [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-extra-tokens' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-c99-extensions' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-unused-private-field' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-reorder-ctor' [INFO] [stderr] warning: In file included from openbabel/src/transform.cpp:21: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:833:43: warning: implicitly-declared 'OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 833 | {return new OBVibrationData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:835:23: note: because 'OpenBabel::OBVibrationData' has user-provided 'OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)' [INFO] [stderr] warning: 835 | OBVibrationData & operator=(const OBVibrationData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:878:37: warning: implicitly-declared 'OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 878 | {return new OBDOSData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:880:17: note: because 'OpenBabel::OBDOSData' has user-provided 'OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)' [INFO] [stderr] warning: 880 | OBDOSData & operator=(const OBDOSData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:925:41: warning: implicitly-declared 'OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 925 | {return new OBOrbitalData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:927:21: note: because 'OpenBabel::OBOrbitalData' has user-provided 'OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)' [INFO] [stderr] warning: 927 | OBOrbitalData & operator=(const OBOrbitalData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: In file included from openbabel/src/transform.cpp:21: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:985:54: warning: implicitly-declared 'OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 985 | {return new OBElectronicTransitionData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:987:34: note: because 'OpenBabel::OBElectronicTransitionData' has user-provided 'OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)' [INFO] [stderr] warning: 987 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: At global scope: [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-extra-tokens' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-c99-extensions' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-unused-private-field' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-reorder-ctor' [INFO] [stderr] warning: In file included from openbabel/src/reactionfacade.cpp:23: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:833:43: warning: implicitly-declared 'OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 833 | {return new OBVibrationData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:835:23: note: because 'OpenBabel::OBVibrationData' has user-provided 'OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)' [INFO] [stderr] warning: 835 | OBVibrationData & operator=(const OBVibrationData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:878:37: warning: implicitly-declared 'OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 878 | {return new OBDOSData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:880:17: note: because 'OpenBabel::OBDOSData' has user-provided 'OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)' [INFO] [stderr] warning: 880 | OBDOSData & operator=(const OBDOSData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:925:41: warning: implicitly-declared 'OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 925 | {return new OBOrbitalData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:927:21: note: because 'OpenBabel::OBOrbitalData' has user-provided 'OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)' [INFO] [stderr] warning: 927 | OBOrbitalData & operator=(const OBOrbitalData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: In file included from openbabel/src/reactionfacade.cpp:23: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:985:54: warning: implicitly-declared 'OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 985 | {return new OBElectronicTransitionData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:987:34: note: because 'OpenBabel::OBElectronicTransitionData' has user-provided 'OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)' [INFO] [stderr] warning: 987 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: At global scope: [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-extra-tokens' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-c99-extensions' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-unused-private-field' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-reorder-ctor' [INFO] [stderr] warning: In file included from openbabel/src/stereo/perception.cpp:34: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:833:43: warning: implicitly-declared 'OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 833 | {return new OBVibrationData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:835:23: note: because 'OpenBabel::OBVibrationData' has user-provided 'OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)' [INFO] [stderr] warning: 835 | OBVibrationData & operator=(const OBVibrationData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:878:37: warning: implicitly-declared 'OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 878 | {return new OBDOSData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:880:17: note: because 'OpenBabel::OBDOSData' has user-provided 'OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)' [INFO] [stderr] warning: 880 | OBDOSData & operator=(const OBDOSData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:925:41: warning: implicitly-declared 'OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 925 | {return new OBOrbitalData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:927:21: note: because 'OpenBabel::OBOrbitalData' has user-provided 'OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)' [INFO] [stderr] warning: 927 | OBOrbitalData & operator=(const OBOrbitalData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: In file included from openbabel/src/stereo/perception.cpp:34: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:985:54: warning: implicitly-declared 'OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 985 | {return new OBElectronicTransitionData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:987:34: note: because 'OpenBabel::OBElectronicTransitionData' has user-provided 'OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)' [INFO] [stderr] warning: 987 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/src/stereo/perception.cpp: In function 'bool OpenBabel::TetStereoToWedgeHash(OpenBabel::OBMol&, std::map&, std::map&)': [INFO] [stderr] warning: openbabel/src/stereo/perception.cpp:2795:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] [INFO] [stderr] warning: 2795 | for (std::vector::iterator data = vdata.begin(); data != vdata.end(); ++data) [INFO] [stderr] warning: | ^~~ [INFO] [stderr] warning: openbabel/src/stereo/perception.cpp:2951:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' [INFO] [stderr] warning: 2951 | return true; [INFO] [stderr] warning: | ^~~~~~ [INFO] [stderr] warning: At global scope: [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-extra-tokens' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-c99-extensions' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-unused-private-field' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-reorder-ctor' [INFO] [stderr] warning: In file included from openbabel/src/formats/smilesformat.cpp:30: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:833:43: warning: implicitly-declared 'OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 833 | {return new OBVibrationData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:835:23: note: because 'OpenBabel::OBVibrationData' has user-provided 'OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)' [INFO] [stderr] warning: 835 | OBVibrationData & operator=(const OBVibrationData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:878:37: warning: implicitly-declared 'OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 878 | {return new OBDOSData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:880:17: note: because 'OpenBabel::OBDOSData' has user-provided 'OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)' [INFO] [stderr] warning: 880 | OBDOSData & operator=(const OBDOSData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:925:41: warning: implicitly-declared 'OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 925 | {return new OBOrbitalData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:927:21: note: because 'OpenBabel::OBOrbitalData' has user-provided 'OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)' [INFO] [stderr] warning: 927 | OBOrbitalData & operator=(const OBOrbitalData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: In file included from openbabel/src/formats/smilesformat.cpp:30: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:985:54: warning: implicitly-declared 'OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 985 | {return new OBElectronicTransitionData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:987:34: note: because 'OpenBabel::OBElectronicTransitionData' has user-provided 'OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)' [INFO] [stderr] warning: 987 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/src/formats/smilesformat.cpp: In constructor 'OpenBabel::OBSmilesParser::OBSmilesParser(bool)': [INFO] [stderr] warning: openbabel/src/formats/smilesformat.cpp:291:10: warning: 'OpenBabel::OBSmilesParser::_preserve_aromaticity' will be initialized after [-Wreorder] [INFO] [stderr] warning: 291 | bool _preserve_aromaticity; [INFO] [stderr] warning: | ^~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel/src/formats/smilesformat.cpp:289:9: warning: 'int OpenBabel::OBSmilesParser::_rxnrole' [-Wreorder] [INFO] [stderr] warning: 289 | int _rxnrole; [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/src/formats/smilesformat.cpp:318:5: warning: when initialized here [-Wreorder] [INFO] [stderr] warning: 318 | OBSmilesParser(bool preserve_aromaticity=false): _preserve_aromaticity(preserve_aromaticity), _rxnrole(1) { } [INFO] [stderr] warning: | ^~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel/src/formats/smilesformat.cpp: In member function 'bool OpenBabel::OBSmilesParser::ParseSmiles(OpenBabel::OBMol&, const string&)': [INFO] [stderr] warning: openbabel/src/formats/smilesformat.cpp:655:15: warning: variable 'atom' set but not used [-Wunused-but-set-variable] [INFO] [stderr] warning: 655 | OBAtom* atom; [INFO] [stderr] warning: | ^~~~ [INFO] [stderr] warning: openbabel/src/formats/smilesformat.cpp: In member function 'void OpenBabel::OBSmilesParser::CreateCisTrans(OpenBabel::OBMol&)': [INFO] [stderr] warning: openbabel/src/formats/smilesformat.cpp:844:56: warning: enumeral and non-enumeral type in conditional expression [-Wextra] [INFO] [stderr] warning: 844 | unsigned int second = (other_bond[0] == nullptr) ? OBStereo::ImplicitRef : other_bond[0]->GetNbrAtom(a1)->GetId(); [INFO] [stderr] warning: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel/src/formats/smilesformat.cpp:845:56: warning: enumeral and non-enumeral type in conditional expression [-Wextra] [INFO] [stderr] warning: 845 | unsigned int fourth = (other_bond[1] == nullptr) ? OBStereo::ImplicitRef : other_bond[1]->GetNbrAtom(a2)->GetId(); [INFO] [stderr] warning: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel/src/formats/smilesformat.cpp: In member function 'bool OpenBabel::OBMol2Cansmi::GetSmilesElement(OpenBabel::OBCanSmiNode*, std::vector&, std::vector&, std::string&)': [INFO] [stderr] warning: openbabel/src/formats/smilesformat.cpp:2685:10: warning: variable 'symbol' set but not used [-Wunused-but-set-variable] [INFO] [stderr] warning: 2685 | char symbol[10]; [INFO] [stderr] warning: | ^~~~~~ [INFO] [stderr] warning: openbabel/src/formats/smilesformat.cpp: In member function 'bool OpenBabel::OBSmilesParser::ParseComplex(OpenBabel::OBMol&)': [INFO] [stderr] warning: openbabel/src/formats/smilesformat.cpp:1694:9: warning: this statement may fall through [-Wimplicit-fallthrough=] [INFO] [stderr] warning: 1694 | } [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/src/formats/smilesformat.cpp:1697:7: note: here [INFO] [stderr] warning: 1697 | default: [INFO] [stderr] warning: | ^~~~~~~ [INFO] [stderr] warning: At global scope: [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-extra-tokens' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-c99-extensions' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-unused-private-field' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-reorder-ctor' [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp: In function 'unsigned int OpenBabel::ECFPHash(unsigned char*, unsigned int)': [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:115:14: warning: this statement may fall through [-Wimplicit-fallthrough=] [INFO] [stderr] warning: 115 | case 11: c += ((unsigned int)ptr[10]<<24); [INFO] [stderr] warning: | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:116:3: note: here [INFO] [stderr] warning: 116 | case 10: c += ((unsigned int)ptr[9]<<16); [INFO] [stderr] warning: | ^~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:116:14: warning: this statement may fall through [-Wimplicit-fallthrough=] [INFO] [stderr] warning: 116 | case 10: c += ((unsigned int)ptr[9]<<16); [INFO] [stderr] warning: | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:117:3: note: here [INFO] [stderr] warning: 117 | case 9: c += ((unsigned int)ptr[8]<<8); [INFO] [stderr] warning: | ^~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:117:14: warning: this statement may fall through [-Wimplicit-fallthrough=] [INFO] [stderr] warning: 117 | case 9: c += ((unsigned int)ptr[8]<<8); [INFO] [stderr] warning: | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:118:3: note: here [INFO] [stderr] warning: 118 | case 8: b += ((unsigned int)ptr[7]<<24); [INFO] [stderr] warning: | ^~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:118:14: warning: this statement may fall through [-Wimplicit-fallthrough=] [INFO] [stderr] warning: 118 | case 8: b += ((unsigned int)ptr[7]<<24); [INFO] [stderr] warning: | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:119:3: note: here [INFO] [stderr] warning: 119 | case 7: b += ((unsigned int)ptr[6]<<16); [INFO] [stderr] warning: | ^~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:119:14: warning: this statement may fall through [-Wimplicit-fallthrough=] [INFO] [stderr] warning: 119 | case 7: b += ((unsigned int)ptr[6]<<16); [INFO] [stderr] warning: | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:120:3: note: here [INFO] [stderr] warning: 120 | case 6: b += ((unsigned int)ptr[5]<<8); [INFO] [stderr] warning: | ^~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:120:14: warning: this statement may fall through [-Wimplicit-fallthrough=] [INFO] [stderr] warning: 120 | case 6: b += ((unsigned int)ptr[5]<<8); [INFO] [stderr] warning: | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:121:3: note: here [INFO] [stderr] warning: 121 | case 5: b += ptr[4]; [INFO] [stderr] warning: | ^~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:121:14: warning: this statement may fall through [-Wimplicit-fallthrough=] [INFO] [stderr] warning: 121 | case 5: b += ptr[4]; [INFO] [stderr] warning: | ~~^~~~~~~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:122:3: note: here [INFO] [stderr] warning: 122 | case 4: a += ((unsigned int)ptr[3]<<24); [INFO] [stderr] warning: | ^~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:122:14: warning: this statement may fall through [-Wimplicit-fallthrough=] [INFO] [stderr] warning: 122 | case 4: a += ((unsigned int)ptr[3]<<24); [INFO] [stderr] warning: | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:123:3: note: here [INFO] [stderr] warning: 123 | case 3: a += ((unsigned int)ptr[2]<<16); [INFO] [stderr] warning: | ^~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:123:14: warning: this statement may fall through [-Wimplicit-fallthrough=] [INFO] [stderr] warning: 123 | case 3: a += ((unsigned int)ptr[2]<<16); [INFO] [stderr] warning: | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:124:3: note: here [INFO] [stderr] warning: 124 | case 2: a += ((unsigned int)ptr[1]<<8); [INFO] [stderr] warning: | ^~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:124:14: warning: this statement may fall through [-Wimplicit-fallthrough=] [INFO] [stderr] warning: 124 | case 2: a += ((unsigned int)ptr[1]<<8); [INFO] [stderr] warning: | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:125:3: note: here [INFO] [stderr] warning: 125 | case 1: a += ptr[0]; [INFO] [stderr] warning: | ^~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp: In function 'unsigned int OpenBabel::ECFPHash(std::vector&)': [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:149:14: warning: this statement may fall through [-Wimplicit-fallthrough=] [INFO] [stderr] warning: 149 | case 2: b += v[i+1]; [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:150:3: note: here [INFO] [stderr] warning: 150 | case 1: a += v[i]; [INFO] [stderr] warning: | ^~~~ [INFO] [stderr] warning: At global scope: [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-extra-tokens' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-c99-extensions' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-unused-private-field' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-reorder-ctor' [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 2m 05s [INFO] running `Command { std: "docker" "inspect" "9ca0a857e29d0ddedd6305f6a22a21741706f68eba8e24aed86a7bd068bb4e17", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "9ca0a857e29d0ddedd6305f6a22a21741706f68eba8e24aed86a7bd068bb4e17", kill_on_drop: false }` [INFO] [stdout] 9ca0a857e29d0ddedd6305f6a22a21741706f68eba8e24aed86a7bd068bb4e17 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:824c28ce115f6b999260af6986f3384c158e782489540e41c0b698ca1d9fd927" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-08-09" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 0f99a48a901d42ac7797796f210ab042948ba8375b6bc61ca054374dd432327e [INFO] running `Command { std: "docker" "start" "-a" "0f99a48a901d42ac7797796f210ab042948ba8375b6bc61ca054374dd432327e", kill_on_drop: false }` [INFO] [stderr] warning: In file included from openbabel/src/atom.cpp:26: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:833:43: warning: implicitly-declared 'OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 833 | {return new OBVibrationData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:835:23: note: because 'OpenBabel::OBVibrationData' has user-provided 'OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)' [INFO] [stderr] warning: 835 | OBVibrationData & operator=(const OBVibrationData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:878:37: warning: implicitly-declared 'OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 878 | {return new OBDOSData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:880:17: note: because 'OpenBabel::OBDOSData' has user-provided 'OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)' [INFO] [stderr] warning: 880 | OBDOSData & operator=(const OBDOSData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:925:41: warning: implicitly-declared 'OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 925 | {return new OBOrbitalData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:927:21: note: because 'OpenBabel::OBOrbitalData' has user-provided 'OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)' [INFO] [stderr] warning: 927 | OBOrbitalData & operator=(const OBOrbitalData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: In file included from openbabel/src/atom.cpp:26: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:985:54: warning: implicitly-declared 'OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 985 | {return new OBElectronicTransitionData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:987:34: note: because 'OpenBabel::OBElectronicTransitionData' has user-provided 'OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)' [INFO] [stderr] warning: 987 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: At global scope: [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-extra-tokens' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-c99-extensions' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-unused-private-field' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-reorder-ctor' [INFO] [stderr] warning: In file included from openbabel/src/bond.cpp:27: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:833:43: warning: implicitly-declared 'OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 833 | {return new OBVibrationData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:835:23: note: because 'OpenBabel::OBVibrationData' has user-provided 'OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)' [INFO] [stderr] warning: 835 | OBVibrationData & operator=(const OBVibrationData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:878:37: warning: implicitly-declared 'OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 878 | {return new OBDOSData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:880:17: note: because 'OpenBabel::OBDOSData' has user-provided 'OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)' [INFO] [stderr] warning: 880 | OBDOSData & operator=(const OBDOSData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:925:41: warning: implicitly-declared 'OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 925 | {return new OBOrbitalData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:927:21: note: because 'OpenBabel::OBOrbitalData' has user-provided 'OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)' [INFO] [stderr] warning: 927 | OBOrbitalData & operator=(const OBOrbitalData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: In file included from openbabel/src/bond.cpp:27: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:985:54: warning: implicitly-declared 'OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 985 | {return new OBElectronicTransitionData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:987:34: note: because 'OpenBabel::OBElectronicTransitionData' has user-provided 'OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)' [INFO] [stderr] warning: 987 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: At global scope: [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-extra-tokens' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-c99-extensions' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-unused-private-field' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-reorder-ctor' [INFO] [stderr] warning: In file included from openbabel/src/generic.cpp:30: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:833:43: warning: implicitly-declared 'OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 833 | {return new OBVibrationData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:835:23: note: because 'OpenBabel::OBVibrationData' has user-provided 'OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)' [INFO] [stderr] warning: 835 | OBVibrationData & operator=(const OBVibrationData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:878:37: warning: implicitly-declared 'OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 878 | {return new OBDOSData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:880:17: note: because 'OpenBabel::OBDOSData' has user-provided 'OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)' [INFO] [stderr] warning: 880 | OBDOSData & operator=(const OBDOSData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:925:41: warning: implicitly-declared 'OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 925 | {return new OBOrbitalData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:927:21: note: because 'OpenBabel::OBOrbitalData' has user-provided 'OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)' [INFO] [stderr] warning: 927 | OBOrbitalData & operator=(const OBOrbitalData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: In file included from openbabel/src/generic.cpp:30: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:985:54: warning: implicitly-declared 'OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 985 | {return new OBElectronicTransitionData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:987:34: note: because 'OpenBabel::OBElectronicTransitionData' has user-provided 'OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)' [INFO] [stderr] warning: 987 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: At global scope: [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-extra-tokens' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-c99-extensions' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-unused-private-field' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-reorder-ctor' [INFO] [stderr] warning: In file included from openbabel/src/graphsym.cpp:32: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:833:43: warning: implicitly-declared 'OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 833 | {return new OBVibrationData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:835:23: note: because 'OpenBabel::OBVibrationData' has user-provided 'OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)' [INFO] [stderr] warning: 835 | OBVibrationData & operator=(const OBVibrationData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:878:37: warning: implicitly-declared 'OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 878 | {return new OBDOSData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:880:17: note: because 'OpenBabel::OBDOSData' has user-provided 'OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)' [INFO] [stderr] warning: 880 | OBDOSData & operator=(const OBDOSData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:925:41: warning: implicitly-declared 'OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 925 | {return new OBOrbitalData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:927:21: note: because 'OpenBabel::OBOrbitalData' has user-provided 'OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)' [INFO] [stderr] warning: 927 | OBOrbitalData & operator=(const OBOrbitalData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: In file included from openbabel/src/graphsym.cpp:32: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:985:54: warning: implicitly-declared 'OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 985 | {return new OBElectronicTransitionData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:987:34: note: because 'OpenBabel::OBElectronicTransitionData' has user-provided 'OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)' [INFO] [stderr] warning: 987 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: At global scope: [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-extra-tokens' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-c99-extensions' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-unused-private-field' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-reorder-ctor' [INFO] [stderr] warning: In file included from openbabel/src/ring.cpp:28: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:833:43: warning: implicitly-declared 'OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 833 | {return new OBVibrationData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:835:23: note: because 'OpenBabel::OBVibrationData' has user-provided 'OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)' [INFO] [stderr] warning: 835 | OBVibrationData & operator=(const OBVibrationData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:878:37: warning: implicitly-declared 'OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 878 | {return new OBDOSData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:880:17: note: because 'OpenBabel::OBDOSData' has user-provided 'OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)' [INFO] [stderr] warning: 880 | OBDOSData & operator=(const OBDOSData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:925:41: warning: implicitly-declared 'OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 925 | {return new OBOrbitalData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:927:21: note: because 'OpenBabel::OBOrbitalData' has user-provided 'OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)' [INFO] [stderr] warning: 927 | OBOrbitalData & operator=(const OBOrbitalData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: In file included from openbabel/src/ring.cpp:28: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:985:54: warning: implicitly-declared 'OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 985 | {return new OBElectronicTransitionData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:987:34: note: because 'OpenBabel::OBElectronicTransitionData' has user-provided 'OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)' [INFO] [stderr] warning: 987 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: At global scope: [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-extra-tokens' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-c99-extensions' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-unused-private-field' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-reorder-ctor' [INFO] [stderr] warning: In file included from openbabel/src/obiter.cpp:26: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:833:43: warning: implicitly-declared 'OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 833 | {return new OBVibrationData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:835:23: note: because 'OpenBabel::OBVibrationData' has user-provided 'OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)' [INFO] [stderr] warning: 835 | OBVibrationData & operator=(const OBVibrationData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:878:37: warning: implicitly-declared 'OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 878 | {return new OBDOSData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:880:17: note: because 'OpenBabel::OBDOSData' has user-provided 'OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)' [INFO] [stderr] warning: 880 | OBDOSData & operator=(const OBDOSData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:925:41: warning: implicitly-declared 'OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 925 | {return new OBOrbitalData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:927:21: note: because 'OpenBabel::OBOrbitalData' has user-provided 'OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)' [INFO] [stderr] warning: 927 | OBOrbitalData & operator=(const OBOrbitalData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: In file included from openbabel/src/obiter.cpp:26: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:985:54: warning: implicitly-declared 'OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 985 | {return new OBElectronicTransitionData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:987:34: note: because 'OpenBabel::OBElectronicTransitionData' has user-provided 'OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)' [INFO] [stderr] warning: 987 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: In file included from openbabel/src/obiter.cpp:27: [INFO] [stderr] warning: openbabel/include/openbabel/obiter.h: In constructor 'OpenBabel::OBMolRingIter::OBMolRingIter(OpenBabel::OBMol*)': [INFO] [stderr] warning: openbabel/include/openbabel/obiter.h:375:12: warning: 'OpenBabel::OBMolRingIter::_parent' will be initialized after [-Wreorder] [INFO] [stderr] warning: 375 | OBMol *_parent; [INFO] [stderr] warning: | ^~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/obiter.h:374:13: warning: 'OpenBabel::OBRing* OpenBabel::OBMolRingIter::_ptr' [-Wreorder] [INFO] [stderr] warning: 374 | OBRing *_ptr; [INFO] [stderr] warning: | ^~~~ [INFO] [stderr] warning: openbabel/src/obiter.cpp:1022:3: warning: when initialized here [-Wreorder] [INFO] [stderr] warning: 1022 | OBMolRingIter::OBMolRingIter(OBMol *mol): _parent(mol), _ptr(nullptr) [INFO] [stderr] warning: | ^~~~~~~~~~~~~ [INFO] [stderr] warning: In file included from openbabel/src/obiter.cpp:27: [INFO] [stderr] warning: openbabel/include/openbabel/obiter.h: In constructor 'OpenBabel::OBMolRingIter::OBMolRingIter(OpenBabel::OBMol&)': [INFO] [stderr] warning: openbabel/include/openbabel/obiter.h:375:12: warning: 'OpenBabel::OBMolRingIter::_parent' will be initialized after [-Wreorder] [INFO] [stderr] warning: 375 | OBMol *_parent; [INFO] [stderr] warning: | ^~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/obiter.h:374:13: warning: 'OpenBabel::OBRing* OpenBabel::OBMolRingIter::_ptr' [-Wreorder] [INFO] [stderr] warning: 374 | OBRing *_ptr; [INFO] [stderr] warning: | ^~~~ [INFO] [stderr] warning: openbabel/src/obiter.cpp:1032:3: warning: when initialized here [-Wreorder] [INFO] [stderr] warning: 1032 | OBMolRingIter::OBMolRingIter(OBMol &mol): _parent(&mol), _ptr(nullptr) [INFO] [stderr] warning: | ^~~~~~~~~~~~~ [INFO] [stderr] warning: At global scope: [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-extra-tokens' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-c99-extensions' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-unused-private-field' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-reorder-ctor' [INFO] [stderr] warning: In file included from openbabel/include/openbabel/rotamer.h:27, [INFO] [stderr] warning: from openbabel/src/builder.cpp:29: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:833:43: warning: implicitly-declared 'OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 833 | {return new OBVibrationData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:835:23: note: because 'OpenBabel::OBVibrationData' has user-provided 'OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)' [INFO] [stderr] warning: 835 | OBVibrationData & operator=(const OBVibrationData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:878:37: warning: implicitly-declared 'OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 878 | {return new OBDOSData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:880:17: note: because 'OpenBabel::OBDOSData' has user-provided 'OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)' [INFO] [stderr] warning: 880 | OBDOSData & operator=(const OBDOSData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:925:41: warning: implicitly-declared 'OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 925 | {return new OBOrbitalData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:927:21: note: because 'OpenBabel::OBOrbitalData' has user-provided 'OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)' [INFO] [stderr] warning: 927 | OBOrbitalData & operator=(const OBOrbitalData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: In file included from openbabel/include/openbabel/rotamer.h:27, [INFO] [stderr] warning: from openbabel/src/builder.cpp:29: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:985:54: warning: implicitly-declared 'OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 985 | {return new OBElectronicTransitionData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:987:34: note: because 'OpenBabel::OBElectronicTransitionData' has user-provided 'OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)' [INFO] [stderr] warning: 987 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: At global scope: [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-extra-tokens' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-c99-extensions' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-unused-private-field' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-reorder-ctor' [INFO] [stderr] warning: In file included from openbabel/src/data.cpp:37: [INFO] [stderr] warning: src/data/atomizationenergies.h:12:23: warning: extra tokens at end of #ifndef directive [INFO] [stderr] warning: 12 | #ifndef OB_ATOMIZATION-ENERGIES_H [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: src/data/atomizationenergies.h:13:9: warning: ISO C++11 requires whitespace after the macro name [INFO] [stderr] warning: 13 | #define OB_ATOMIZATION-ENERGIES_H [INFO] [stderr] warning: | ^~~~~~~~~~~~~~ [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-extra-tokens' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-c99-extensions' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-unused-private-field' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-reorder-ctor' [INFO] [stderr] warning: In file included from openbabel/src/descriptor.cpp:21: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:833:43: warning: implicitly-declared 'OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 833 | {return new OBVibrationData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:835:23: note: because 'OpenBabel::OBVibrationData' has user-provided 'OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)' [INFO] [stderr] warning: 835 | OBVibrationData & operator=(const OBVibrationData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:878:37: warning: implicitly-declared 'OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 878 | {return new OBDOSData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:880:17: note: because 'OpenBabel::OBDOSData' has user-provided 'OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)' [INFO] [stderr] warning: 880 | OBDOSData & operator=(const OBDOSData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:925:41: warning: implicitly-declared 'OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 925 | {return new OBOrbitalData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:927:21: note: because 'OpenBabel::OBOrbitalData' has user-provided 'OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)' [INFO] [stderr] warning: 927 | OBOrbitalData & operator=(const OBOrbitalData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: In file included from openbabel/src/descriptor.cpp:21: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:985:54: warning: implicitly-declared 'OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 985 | {return new OBElectronicTransitionData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:987:34: note: because 'OpenBabel::OBElectronicTransitionData' has user-provided 'OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)' [INFO] [stderr] warning: 987 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: At global scope: [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-extra-tokens' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-c99-extensions' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-unused-private-field' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-reorder-ctor' [INFO] [stderr] warning: openbabel/src/typer.cpp: In function 'bool OpenBabel::AssignOBAromaticityModel(OpenBabel::OBAtom*, int&, int&)': [INFO] [stderr] warning: openbabel/src/typer.cpp:484:9: warning: this statement may fall through [-Wimplicit-fallthrough=] [INFO] [stderr] warning: 484 | if (val == 2 && deg == 2) { [INFO] [stderr] warning: | ^~ [INFO] [stderr] warning: openbabel/src/typer.cpp:487:7: note: here [INFO] [stderr] warning: 487 | case 1: [INFO] [stderr] warning: | ^~~~ [INFO] [stderr] warning: At global scope: [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-extra-tokens' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-c99-extensions' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-unused-private-field' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-reorder-ctor' [INFO] [stderr] warning: openbabel/src/parsmart.cpp: In function 'int OpenBabel::CreateAtom(OpenBabel::Pattern*, OpenBabel::AtomExpr*, int, int)': [INFO] [stderr] warning: openbabel/src/parsmart.cpp:446:15: warning: variable 'size' set but not used [-Wunused-but-set-variable] [INFO] [stderr] warning: 446 | int index,size; [INFO] [stderr] warning: | ^~~~ [INFO] [stderr] warning: openbabel/src/parsmart.cpp: In function 'int OpenBabel::CreateBond(OpenBabel::Pattern*, OpenBabel::BondExpr*, int, int)': [INFO] [stderr] warning: openbabel/src/parsmart.cpp:478:15: warning: variable 'size' set but not used [-Wunused-but-set-variable] [INFO] [stderr] warning: 478 | int index,size; [INFO] [stderr] warning: | ^~~~ [INFO] [stderr] warning: At global scope: [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-extra-tokens' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-c99-extensions' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-unused-private-field' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-reorder-ctor' [INFO] [stderr] warning: In file included from openbabel/include/openbabel/rotamer.h:27, [INFO] [stderr] warning: from openbabel/src/mol.cpp:25: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:833:43: warning: implicitly-declared 'OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 833 | {return new OBVibrationData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:835:23: note: because 'OpenBabel::OBVibrationData' has user-provided 'OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)' [INFO] [stderr] warning: 835 | OBVibrationData & operator=(const OBVibrationData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:878:37: warning: implicitly-declared 'OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 878 | {return new OBDOSData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:880:17: note: because 'OpenBabel::OBDOSData' has user-provided 'OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)' [INFO] [stderr] warning: 880 | OBDOSData & operator=(const OBDOSData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:925:41: warning: implicitly-declared 'OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 925 | {return new OBOrbitalData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:927:21: note: because 'OpenBabel::OBOrbitalData' has user-provided 'OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)' [INFO] [stderr] warning: 927 | OBOrbitalData & operator=(const OBOrbitalData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: In file included from openbabel/include/openbabel/rotamer.h:27, [INFO] [stderr] warning: from openbabel/src/mol.cpp:25: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:985:54: warning: implicitly-declared 'OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 985 | {return new OBElectronicTransitionData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:987:34: note: because 'OpenBabel::OBElectronicTransitionData' has user-provided 'OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)' [INFO] [stderr] warning: 987 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/src/mol.cpp: In member function 'unsigned int OpenBabel::OBMol::NumHvyAtoms() const': [INFO] [stderr] warning: openbabel/src/mol.cpp:809:36: warning: unnecessary parentheses in declaration of 'i' [-Wparentheses] [INFO] [stderr] warning: 809 | vector::const_iterator(i); [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/src/mol.cpp: In member function 'bool OpenBabel::OBMol::CopySubstructure(OpenBabel::OBMol&, OpenBabel::OBBitVec*, OpenBabel::OBBitVec*, unsigned int, std::vector*, std::vector*)': [INFO] [stderr] warning: openbabel/src/mol.cpp:4210:59: warning: enumeral and non-enumeral type in conditional expression [-Wextra] [INFO] [stderr] warning: 4210 | newcfg.begin = cfg.begin == OBStereo::ImplicitRef ? OBStereo::ImplicitRef : AtomMap[GetAtomById(cfg.begin)]->GetId(); [INFO] [stderr] warning: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel/src/mol.cpp:4211:55: warning: enumeral and non-enumeral type in conditional expression [-Wextra] [INFO] [stderr] warning: 4211 | newcfg.end = cfg.end == OBStereo::ImplicitRef ? OBStereo::ImplicitRef : AtomMap[GetAtomById(cfg.end)]->GetId(); [INFO] [stderr] warning: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel/src/mol.cpp:4214:60: warning: enumeral and non-enumeral type in conditional expression [-Wextra] [INFO] [stderr] warning: 4214 | OBStereo::Ref ref = *ri == OBStereo::ImplicitRef ? OBStereo::ImplicitRef : AtomMap[GetAtomById(*ri)]->GetId(); [INFO] [stderr] warning: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel/src/mol.cpp:4257:57: warning: enumeral and non-enumeral type in conditional expression [-Wextra] [INFO] [stderr] warning: 4257 | newcfg.from = cfg.from == OBStereo::ImplicitRef ? OBStereo::ImplicitRef : AtomMap[GetAtomById(cfg.from)]->GetId(); [INFO] [stderr] warning: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel/src/mol.cpp:4260:60: warning: enumeral and non-enumeral type in conditional expression [-Wextra] [INFO] [stderr] warning: 4260 | OBStereo::Ref ref = *ri == OBStereo::ImplicitRef ? OBStereo::ImplicitRef : AtomMap[GetAtomById(*ri)]->GetId(); [INFO] [stderr] warning: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: At global scope: [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-extra-tokens' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-c99-extensions' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-unused-private-field' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-reorder-ctor' [INFO] [stderr] warning: In file included from openbabel/src/transform.cpp:21: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:833:43: warning: implicitly-declared 'OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 833 | {return new OBVibrationData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:835:23: note: because 'OpenBabel::OBVibrationData' has user-provided 'OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)' [INFO] [stderr] warning: 835 | OBVibrationData & operator=(const OBVibrationData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:878:37: warning: implicitly-declared 'OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 878 | {return new OBDOSData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:880:17: note: because 'OpenBabel::OBDOSData' has user-provided 'OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)' [INFO] [stderr] warning: 880 | OBDOSData & operator=(const OBDOSData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:925:41: warning: implicitly-declared 'OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 925 | {return new OBOrbitalData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:927:21: note: because 'OpenBabel::OBOrbitalData' has user-provided 'OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)' [INFO] [stderr] warning: 927 | OBOrbitalData & operator=(const OBOrbitalData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: In file included from openbabel/src/transform.cpp:21: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:985:54: warning: implicitly-declared 'OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 985 | {return new OBElectronicTransitionData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:987:34: note: because 'OpenBabel::OBElectronicTransitionData' has user-provided 'OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)' [INFO] [stderr] warning: 987 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: At global scope: [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-extra-tokens' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-c99-extensions' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-unused-private-field' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-reorder-ctor' [INFO] [stderr] warning: In file included from openbabel/src/reactionfacade.cpp:23: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:833:43: warning: implicitly-declared 'OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 833 | {return new OBVibrationData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:835:23: note: because 'OpenBabel::OBVibrationData' has user-provided 'OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)' [INFO] [stderr] warning: 835 | OBVibrationData & operator=(const OBVibrationData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:878:37: warning: implicitly-declared 'OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 878 | {return new OBDOSData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:880:17: note: because 'OpenBabel::OBDOSData' has user-provided 'OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)' [INFO] [stderr] warning: 880 | OBDOSData & operator=(const OBDOSData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:925:41: warning: implicitly-declared 'OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 925 | {return new OBOrbitalData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:927:21: note: because 'OpenBabel::OBOrbitalData' has user-provided 'OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)' [INFO] [stderr] warning: 927 | OBOrbitalData & operator=(const OBOrbitalData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: In file included from openbabel/src/reactionfacade.cpp:23: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:985:54: warning: implicitly-declared 'OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 985 | {return new OBElectronicTransitionData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:987:34: note: because 'OpenBabel::OBElectronicTransitionData' has user-provided 'OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)' [INFO] [stderr] warning: 987 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: At global scope: [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-extra-tokens' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-c99-extensions' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-unused-private-field' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-reorder-ctor' [INFO] [stderr] warning: In file included from openbabel/src/stereo/perception.cpp:34: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:833:43: warning: implicitly-declared 'OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 833 | {return new OBVibrationData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:835:23: note: because 'OpenBabel::OBVibrationData' has user-provided 'OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)' [INFO] [stderr] warning: 835 | OBVibrationData & operator=(const OBVibrationData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:878:37: warning: implicitly-declared 'OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 878 | {return new OBDOSData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:880:17: note: because 'OpenBabel::OBDOSData' has user-provided 'OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)' [INFO] [stderr] warning: 880 | OBDOSData & operator=(const OBDOSData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:925:41: warning: implicitly-declared 'OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 925 | {return new OBOrbitalData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:927:21: note: because 'OpenBabel::OBOrbitalData' has user-provided 'OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)' [INFO] [stderr] warning: 927 | OBOrbitalData & operator=(const OBOrbitalData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: In file included from openbabel/src/stereo/perception.cpp:34: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:985:54: warning: implicitly-declared 'OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 985 | {return new OBElectronicTransitionData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:987:34: note: because 'OpenBabel::OBElectronicTransitionData' has user-provided 'OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)' [INFO] [stderr] warning: 987 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/src/stereo/perception.cpp: In function 'bool OpenBabel::TetStereoToWedgeHash(OpenBabel::OBMol&, std::map&, std::map&)': [INFO] [stderr] warning: openbabel/src/stereo/perception.cpp:2795:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] [INFO] [stderr] warning: 2795 | for (std::vector::iterator data = vdata.begin(); data != vdata.end(); ++data) [INFO] [stderr] warning: | ^~~ [INFO] [stderr] warning: openbabel/src/stereo/perception.cpp:2951:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' [INFO] [stderr] warning: 2951 | return true; [INFO] [stderr] warning: | ^~~~~~ [INFO] [stderr] warning: At global scope: [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-extra-tokens' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-c99-extensions' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-unused-private-field' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-reorder-ctor' [INFO] [stderr] warning: In file included from openbabel/src/formats/smilesformat.cpp:30: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:833:43: warning: implicitly-declared 'OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 833 | {return new OBVibrationData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:835:23: note: because 'OpenBabel::OBVibrationData' has user-provided 'OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)' [INFO] [stderr] warning: 835 | OBVibrationData & operator=(const OBVibrationData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:878:37: warning: implicitly-declared 'OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 878 | {return new OBDOSData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:880:17: note: because 'OpenBabel::OBDOSData' has user-provided 'OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)' [INFO] [stderr] warning: 880 | OBDOSData & operator=(const OBDOSData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:925:41: warning: implicitly-declared 'OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 925 | {return new OBOrbitalData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:927:21: note: because 'OpenBabel::OBOrbitalData' has user-provided 'OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)' [INFO] [stderr] warning: 927 | OBOrbitalData & operator=(const OBOrbitalData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: In file included from openbabel/src/formats/smilesformat.cpp:30: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:985:54: warning: implicitly-declared 'OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 985 | {return new OBElectronicTransitionData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:987:34: note: because 'OpenBabel::OBElectronicTransitionData' has user-provided 'OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)' [INFO] [stderr] warning: 987 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/src/formats/smilesformat.cpp: In constructor 'OpenBabel::OBSmilesParser::OBSmilesParser(bool)': [INFO] [stderr] warning: openbabel/src/formats/smilesformat.cpp:291:10: warning: 'OpenBabel::OBSmilesParser::_preserve_aromaticity' will be initialized after [-Wreorder] [INFO] [stderr] warning: 291 | bool _preserve_aromaticity; [INFO] [stderr] warning: | ^~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel/src/formats/smilesformat.cpp:289:9: warning: 'int OpenBabel::OBSmilesParser::_rxnrole' [-Wreorder] [INFO] [stderr] warning: 289 | int _rxnrole; [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/src/formats/smilesformat.cpp:318:5: warning: when initialized here [-Wreorder] [INFO] [stderr] warning: 318 | OBSmilesParser(bool preserve_aromaticity=false): _preserve_aromaticity(preserve_aromaticity), _rxnrole(1) { } [INFO] [stderr] warning: | ^~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel/src/formats/smilesformat.cpp: In member function 'bool OpenBabel::OBSmilesParser::ParseSmiles(OpenBabel::OBMol&, const string&)': [INFO] [stderr] warning: openbabel/src/formats/smilesformat.cpp:655:15: warning: variable 'atom' set but not used [-Wunused-but-set-variable] [INFO] [stderr] warning: 655 | OBAtom* atom; [INFO] [stderr] warning: | ^~~~ [INFO] [stderr] warning: openbabel/src/formats/smilesformat.cpp: In member function 'void OpenBabel::OBSmilesParser::CreateCisTrans(OpenBabel::OBMol&)': [INFO] [stderr] warning: openbabel/src/formats/smilesformat.cpp:844:56: warning: enumeral and non-enumeral type in conditional expression [-Wextra] [INFO] [stderr] warning: 844 | unsigned int second = (other_bond[0] == nullptr) ? OBStereo::ImplicitRef : other_bond[0]->GetNbrAtom(a1)->GetId(); [INFO] [stderr] warning: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel/src/formats/smilesformat.cpp:845:56: warning: enumeral and non-enumeral type in conditional expression [-Wextra] [INFO] [stderr] warning: 845 | unsigned int fourth = (other_bond[1] == nullptr) ? OBStereo::ImplicitRef : other_bond[1]->GetNbrAtom(a2)->GetId(); [INFO] [stderr] warning: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel/src/formats/smilesformat.cpp: In member function 'bool OpenBabel::OBMol2Cansmi::GetSmilesElement(OpenBabel::OBCanSmiNode*, std::vector&, std::vector&, std::string&)': [INFO] [stderr] warning: openbabel/src/formats/smilesformat.cpp:2685:10: warning: variable 'symbol' set but not used [-Wunused-but-set-variable] [INFO] [stderr] warning: 2685 | char symbol[10]; [INFO] [stderr] warning: | ^~~~~~ [INFO] [stderr] warning: openbabel/src/formats/smilesformat.cpp: In member function 'bool OpenBabel::OBSmilesParser::ParseComplex(OpenBabel::OBMol&)': [INFO] [stderr] warning: openbabel/src/formats/smilesformat.cpp:1694:9: warning: this statement may fall through [-Wimplicit-fallthrough=] [INFO] [stderr] warning: 1694 | } [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/src/formats/smilesformat.cpp:1697:7: note: here [INFO] [stderr] warning: 1697 | default: [INFO] [stderr] warning: | ^~~~~~~ [INFO] [stderr] warning: At global scope: [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-extra-tokens' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-c99-extensions' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-unused-private-field' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-reorder-ctor' [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp: In function 'unsigned int OpenBabel::ECFPHash(unsigned char*, unsigned int)': [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:115:14: warning: this statement may fall through [-Wimplicit-fallthrough=] [INFO] [stderr] warning: 115 | case 11: c += ((unsigned int)ptr[10]<<24); [INFO] [stderr] warning: | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:116:3: note: here [INFO] [stderr] warning: 116 | case 10: c += ((unsigned int)ptr[9]<<16); [INFO] [stderr] warning: | ^~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:116:14: warning: this statement may fall through [-Wimplicit-fallthrough=] [INFO] [stderr] warning: 116 | case 10: c += ((unsigned int)ptr[9]<<16); [INFO] [stderr] warning: | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:117:3: note: here [INFO] [stderr] warning: 117 | case 9: c += ((unsigned int)ptr[8]<<8); [INFO] [stderr] warning: | ^~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:117:14: warning: this statement may fall through [-Wimplicit-fallthrough=] [INFO] [stderr] warning: 117 | case 9: c += ((unsigned int)ptr[8]<<8); [INFO] [stderr] warning: | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:118:3: note: here [INFO] [stderr] warning: 118 | case 8: b += ((unsigned int)ptr[7]<<24); [INFO] [stderr] warning: | ^~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:118:14: warning: this statement may fall through [-Wimplicit-fallthrough=] [INFO] [stderr] warning: 118 | case 8: b += ((unsigned int)ptr[7]<<24); [INFO] [stderr] warning: | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:119:3: note: here [INFO] [stderr] warning: 119 | case 7: b += ((unsigned int)ptr[6]<<16); [INFO] [stderr] warning: | ^~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:119:14: warning: this statement may fall through [-Wimplicit-fallthrough=] [INFO] [stderr] warning: 119 | case 7: b += ((unsigned int)ptr[6]<<16); [INFO] [stderr] warning: | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:120:3: note: here [INFO] [stderr] warning: 120 | case 6: b += ((unsigned int)ptr[5]<<8); [INFO] [stderr] warning: | ^~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:120:14: warning: this statement may fall through [-Wimplicit-fallthrough=] [INFO] [stderr] warning: 120 | case 6: b += ((unsigned int)ptr[5]<<8); [INFO] [stderr] warning: | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:121:3: note: here [INFO] [stderr] warning: 121 | case 5: b += ptr[4]; [INFO] [stderr] warning: | ^~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:121:14: warning: this statement may fall through [-Wimplicit-fallthrough=] [INFO] [stderr] warning: 121 | case 5: b += ptr[4]; [INFO] [stderr] warning: | ~~^~~~~~~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:122:3: note: here [INFO] [stderr] warning: 122 | case 4: a += ((unsigned int)ptr[3]<<24); [INFO] [stderr] warning: | ^~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:122:14: warning: this statement may fall through [-Wimplicit-fallthrough=] [INFO] [stderr] warning: 122 | case 4: a += ((unsigned int)ptr[3]<<24); [INFO] [stderr] warning: | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:123:3: note: here [INFO] [stderr] warning: 123 | case 3: a += ((unsigned int)ptr[2]<<16); [INFO] [stderr] warning: | ^~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:123:14: warning: this statement may fall through [-Wimplicit-fallthrough=] [INFO] [stderr] warning: 123 | case 3: a += ((unsigned int)ptr[2]<<16); [INFO] [stderr] warning: | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:124:3: note: here [INFO] [stderr] warning: 124 | case 2: a += ((unsigned int)ptr[1]<<8); [INFO] [stderr] warning: | ^~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:124:14: warning: this statement may fall through [-Wimplicit-fallthrough=] [INFO] [stderr] warning: 124 | case 2: a += ((unsigned int)ptr[1]<<8); [INFO] [stderr] warning: | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:125:3: note: here [INFO] [stderr] warning: 125 | case 1: a += ptr[0]; [INFO] [stderr] warning: | ^~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp: In function 'unsigned int OpenBabel::ECFPHash(std::vector&)': [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:149:14: warning: this statement may fall through [-Wimplicit-fallthrough=] [INFO] [stderr] warning: 149 | case 2: b += v[i+1]; [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:150:3: note: here [INFO] [stderr] warning: 150 | case 1: a += v[i]; [INFO] [stderr] warning: | ^~~~ [INFO] [stderr] warning: At global scope: [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-extra-tokens' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-c99-extensions' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-unused-private-field' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-reorder-ctor' [INFO] [stderr] Compiling openbabel-sys v0.1.8+openbabel-3.1.1 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 2.43s [INFO] running `Command { std: "docker" "inspect" "0f99a48a901d42ac7797796f210ab042948ba8375b6bc61ca054374dd432327e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0f99a48a901d42ac7797796f210ab042948ba8375b6bc61ca054374dd432327e", kill_on_drop: false }` [INFO] [stdout] 0f99a48a901d42ac7797796f210ab042948ba8375b6bc61ca054374dd432327e [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:824c28ce115f6b999260af6986f3384c158e782489540e41c0b698ca1d9fd927" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-08-09" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] c35e8af06eb0cf58730a14e0763dfd7f40f42283a5fbc2da9f1ec104fc3bbbfe [INFO] running `Command { std: "docker" "start" "-a" "c35e8af06eb0cf58730a14e0763dfd7f40f42283a5fbc2da9f1ec104fc3bbbfe", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] warning: In file included from openbabel/src/atom.cpp:26: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:833:43: warning: implicitly-declared 'OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 833 | {return new OBVibrationData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:835:23: note: because 'OpenBabel::OBVibrationData' has user-provided 'OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)' [INFO] [stderr] warning: 835 | OBVibrationData & operator=(const OBVibrationData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:878:37: warning: implicitly-declared 'OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 878 | {return new OBDOSData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:880:17: note: because 'OpenBabel::OBDOSData' has user-provided 'OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)' [INFO] [stderr] warning: 880 | OBDOSData & operator=(const OBDOSData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:925:41: warning: implicitly-declared 'OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 925 | {return new OBOrbitalData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:927:21: note: because 'OpenBabel::OBOrbitalData' has user-provided 'OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)' [INFO] [stderr] warning: 927 | OBOrbitalData & operator=(const OBOrbitalData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: In file included from openbabel/src/atom.cpp:26: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:985:54: warning: implicitly-declared 'OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 985 | {return new OBElectronicTransitionData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:987:34: note: because 'OpenBabel::OBElectronicTransitionData' has user-provided 'OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)' [INFO] [stderr] warning: 987 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: At global scope: [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-extra-tokens' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-c99-extensions' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-unused-private-field' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-reorder-ctor' [INFO] [stderr] warning: In file included from openbabel/src/bond.cpp:27: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:833:43: warning: implicitly-declared 'OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 833 | {return new OBVibrationData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:835:23: note: because 'OpenBabel::OBVibrationData' has user-provided 'OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)' [INFO] [stderr] warning: 835 | OBVibrationData & operator=(const OBVibrationData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:878:37: warning: implicitly-declared 'OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 878 | {return new OBDOSData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:880:17: note: because 'OpenBabel::OBDOSData' has user-provided 'OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)' [INFO] [stderr] warning: 880 | OBDOSData & operator=(const OBDOSData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:925:41: warning: implicitly-declared 'OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 925 | {return new OBOrbitalData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:927:21: note: because 'OpenBabel::OBOrbitalData' has user-provided 'OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)' [INFO] [stderr] warning: 927 | OBOrbitalData & operator=(const OBOrbitalData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: In file included from openbabel/src/bond.cpp:27: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:985:54: warning: implicitly-declared 'OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 985 | {return new OBElectronicTransitionData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:987:34: note: because 'OpenBabel::OBElectronicTransitionData' has user-provided 'OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)' [INFO] [stderr] warning: 987 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: At global scope: [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-extra-tokens' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-c99-extensions' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-unused-private-field' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-reorder-ctor' [INFO] [stderr] warning: In file included from openbabel/src/generic.cpp:30: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:833:43: warning: implicitly-declared 'OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 833 | {return new OBVibrationData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:835:23: note: because 'OpenBabel::OBVibrationData' has user-provided 'OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)' [INFO] [stderr] warning: 835 | OBVibrationData & operator=(const OBVibrationData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:878:37: warning: implicitly-declared 'OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 878 | {return new OBDOSData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:880:17: note: because 'OpenBabel::OBDOSData' has user-provided 'OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)' [INFO] [stderr] warning: 880 | OBDOSData & operator=(const OBDOSData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:925:41: warning: implicitly-declared 'OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 925 | {return new OBOrbitalData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:927:21: note: because 'OpenBabel::OBOrbitalData' has user-provided 'OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)' [INFO] [stderr] warning: 927 | OBOrbitalData & operator=(const OBOrbitalData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: In file included from openbabel/src/generic.cpp:30: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:985:54: warning: implicitly-declared 'OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 985 | {return new OBElectronicTransitionData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:987:34: note: because 'OpenBabel::OBElectronicTransitionData' has user-provided 'OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)' [INFO] [stderr] warning: 987 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: At global scope: [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-extra-tokens' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-c99-extensions' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-unused-private-field' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-reorder-ctor' [INFO] [stderr] warning: In file included from openbabel/src/graphsym.cpp:32: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:833:43: warning: implicitly-declared 'OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 833 | {return new OBVibrationData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:835:23: note: because 'OpenBabel::OBVibrationData' has user-provided 'OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)' [INFO] [stderr] warning: 835 | OBVibrationData & operator=(const OBVibrationData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:878:37: warning: implicitly-declared 'OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 878 | {return new OBDOSData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:880:17: note: because 'OpenBabel::OBDOSData' has user-provided 'OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)' [INFO] [stderr] warning: 880 | OBDOSData & operator=(const OBDOSData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:925:41: warning: implicitly-declared 'OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 925 | {return new OBOrbitalData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:927:21: note: because 'OpenBabel::OBOrbitalData' has user-provided 'OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)' [INFO] [stderr] warning: 927 | OBOrbitalData & operator=(const OBOrbitalData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: In file included from openbabel/src/graphsym.cpp:32: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:985:54: warning: implicitly-declared 'OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 985 | {return new OBElectronicTransitionData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:987:34: note: because 'OpenBabel::OBElectronicTransitionData' has user-provided 'OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)' [INFO] [stderr] warning: 987 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: At global scope: [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-extra-tokens' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-c99-extensions' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-unused-private-field' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-reorder-ctor' [INFO] [stderr] warning: In file included from openbabel/src/ring.cpp:28: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:833:43: warning: implicitly-declared 'OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 833 | {return new OBVibrationData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:835:23: note: because 'OpenBabel::OBVibrationData' has user-provided 'OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)' [INFO] [stderr] warning: 835 | OBVibrationData & operator=(const OBVibrationData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:878:37: warning: implicitly-declared 'OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 878 | {return new OBDOSData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:880:17: note: because 'OpenBabel::OBDOSData' has user-provided 'OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)' [INFO] [stderr] warning: 880 | OBDOSData & operator=(const OBDOSData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:925:41: warning: implicitly-declared 'OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 925 | {return new OBOrbitalData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:927:21: note: because 'OpenBabel::OBOrbitalData' has user-provided 'OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)' [INFO] [stderr] warning: 927 | OBOrbitalData & operator=(const OBOrbitalData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: In file included from openbabel/src/ring.cpp:28: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:985:54: warning: implicitly-declared 'OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 985 | {return new OBElectronicTransitionData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:987:34: note: because 'OpenBabel::OBElectronicTransitionData' has user-provided 'OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)' [INFO] [stderr] warning: 987 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: At global scope: [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-extra-tokens' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-c99-extensions' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-unused-private-field' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-reorder-ctor' [INFO] [stderr] warning: In file included from openbabel/src/obiter.cpp:26: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:833:43: warning: implicitly-declared 'OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 833 | {return new OBVibrationData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:835:23: note: because 'OpenBabel::OBVibrationData' has user-provided 'OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)' [INFO] [stderr] warning: 835 | OBVibrationData & operator=(const OBVibrationData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:878:37: warning: implicitly-declared 'OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 878 | {return new OBDOSData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:880:17: note: because 'OpenBabel::OBDOSData' has user-provided 'OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)' [INFO] [stderr] warning: 880 | OBDOSData & operator=(const OBDOSData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:925:41: warning: implicitly-declared 'OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 925 | {return new OBOrbitalData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:927:21: note: because 'OpenBabel::OBOrbitalData' has user-provided 'OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)' [INFO] [stderr] warning: 927 | OBOrbitalData & operator=(const OBOrbitalData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: In file included from openbabel/src/obiter.cpp:26: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:985:54: warning: implicitly-declared 'OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 985 | {return new OBElectronicTransitionData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:987:34: note: because 'OpenBabel::OBElectronicTransitionData' has user-provided 'OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)' [INFO] [stderr] warning: 987 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: In file included from openbabel/src/obiter.cpp:27: [INFO] [stderr] warning: openbabel/include/openbabel/obiter.h: In constructor 'OpenBabel::OBMolRingIter::OBMolRingIter(OpenBabel::OBMol*)': [INFO] [stderr] warning: openbabel/include/openbabel/obiter.h:375:12: warning: 'OpenBabel::OBMolRingIter::_parent' will be initialized after [-Wreorder] [INFO] [stderr] warning: 375 | OBMol *_parent; [INFO] [stderr] warning: | ^~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/obiter.h:374:13: warning: 'OpenBabel::OBRing* OpenBabel::OBMolRingIter::_ptr' [-Wreorder] [INFO] [stderr] warning: 374 | OBRing *_ptr; [INFO] [stderr] warning: | ^~~~ [INFO] [stderr] warning: openbabel/src/obiter.cpp:1022:3: warning: when initialized here [-Wreorder] [INFO] [stderr] warning: 1022 | OBMolRingIter::OBMolRingIter(OBMol *mol): _parent(mol), _ptr(nullptr) [INFO] [stderr] warning: | ^~~~~~~~~~~~~ [INFO] [stderr] warning: In file included from openbabel/src/obiter.cpp:27: [INFO] [stderr] warning: openbabel/include/openbabel/obiter.h: In constructor 'OpenBabel::OBMolRingIter::OBMolRingIter(OpenBabel::OBMol&)': [INFO] [stderr] warning: openbabel/include/openbabel/obiter.h:375:12: warning: 'OpenBabel::OBMolRingIter::_parent' will be initialized after [-Wreorder] [INFO] [stderr] warning: 375 | OBMol *_parent; [INFO] [stderr] warning: | ^~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/obiter.h:374:13: warning: 'OpenBabel::OBRing* OpenBabel::OBMolRingIter::_ptr' [-Wreorder] [INFO] [stderr] warning: 374 | OBRing *_ptr; [INFO] [stderr] warning: | ^~~~ [INFO] [stderr] warning: openbabel/src/obiter.cpp:1032:3: warning: when initialized here [-Wreorder] [INFO] [stderr] warning: 1032 | OBMolRingIter::OBMolRingIter(OBMol &mol): _parent(&mol), _ptr(nullptr) [INFO] [stderr] warning: | ^~~~~~~~~~~~~ [INFO] [stderr] warning: At global scope: [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-extra-tokens' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-c99-extensions' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-unused-private-field' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-reorder-ctor' [INFO] [stderr] warning: In file included from openbabel/include/openbabel/rotamer.h:27, [INFO] [stderr] warning: from openbabel/src/builder.cpp:29: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:833:43: warning: implicitly-declared 'OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 833 | {return new OBVibrationData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:835:23: note: because 'OpenBabel::OBVibrationData' has user-provided 'OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)' [INFO] [stderr] warning: 835 | OBVibrationData & operator=(const OBVibrationData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:878:37: warning: implicitly-declared 'OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 878 | {return new OBDOSData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:880:17: note: because 'OpenBabel::OBDOSData' has user-provided 'OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)' [INFO] [stderr] warning: 880 | OBDOSData & operator=(const OBDOSData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:925:41: warning: implicitly-declared 'OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 925 | {return new OBOrbitalData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:927:21: note: because 'OpenBabel::OBOrbitalData' has user-provided 'OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)' [INFO] [stderr] warning: 927 | OBOrbitalData & operator=(const OBOrbitalData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: In file included from openbabel/include/openbabel/rotamer.h:27, [INFO] [stderr] warning: from openbabel/src/builder.cpp:29: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:985:54: warning: implicitly-declared 'OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 985 | {return new OBElectronicTransitionData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:987:34: note: because 'OpenBabel::OBElectronicTransitionData' has user-provided 'OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)' [INFO] [stderr] warning: 987 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: At global scope: [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-extra-tokens' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-c99-extensions' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-unused-private-field' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-reorder-ctor' [INFO] [stderr] warning: In file included from openbabel/src/data.cpp:37: [INFO] [stderr] warning: src/data/atomizationenergies.h:12:23: warning: extra tokens at end of #ifndef directive [INFO] [stderr] warning: 12 | #ifndef OB_ATOMIZATION-ENERGIES_H [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: src/data/atomizationenergies.h:13:9: warning: ISO C++11 requires whitespace after the macro name [INFO] [stderr] warning: 13 | #define OB_ATOMIZATION-ENERGIES_H [INFO] [stderr] warning: | ^~~~~~~~~~~~~~ [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-extra-tokens' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-c99-extensions' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-unused-private-field' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-reorder-ctor' [INFO] [stderr] warning: In file included from openbabel/src/descriptor.cpp:21: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:833:43: warning: implicitly-declared 'OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 833 | {return new OBVibrationData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:835:23: note: because 'OpenBabel::OBVibrationData' has user-provided 'OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)' [INFO] [stderr] warning: 835 | OBVibrationData & operator=(const OBVibrationData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:878:37: warning: implicitly-declared 'OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 878 | {return new OBDOSData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:880:17: note: because 'OpenBabel::OBDOSData' has user-provided 'OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)' [INFO] [stderr] warning: 880 | OBDOSData & operator=(const OBDOSData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:925:41: warning: implicitly-declared 'OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 925 | {return new OBOrbitalData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:927:21: note: because 'OpenBabel::OBOrbitalData' has user-provided 'OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)' [INFO] [stderr] warning: 927 | OBOrbitalData & operator=(const OBOrbitalData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: In file included from openbabel/src/descriptor.cpp:21: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:985:54: warning: implicitly-declared 'OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 985 | {return new OBElectronicTransitionData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:987:34: note: because 'OpenBabel::OBElectronicTransitionData' has user-provided 'OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)' [INFO] [stderr] warning: 987 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: At global scope: [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-extra-tokens' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-c99-extensions' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-unused-private-field' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-reorder-ctor' [INFO] [stderr] warning: openbabel/src/typer.cpp: In function 'bool OpenBabel::AssignOBAromaticityModel(OpenBabel::OBAtom*, int&, int&)': [INFO] [stderr] warning: openbabel/src/typer.cpp:484:9: warning: this statement may fall through [-Wimplicit-fallthrough=] [INFO] [stderr] warning: 484 | if (val == 2 && deg == 2) { [INFO] [stderr] warning: | ^~ [INFO] [stderr] warning: openbabel/src/typer.cpp:487:7: note: here [INFO] [stderr] warning: 487 | case 1: [INFO] [stderr] warning: | ^~~~ [INFO] [stderr] warning: At global scope: [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-extra-tokens' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-c99-extensions' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-unused-private-field' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-reorder-ctor' [INFO] [stderr] warning: openbabel/src/parsmart.cpp: In function 'int OpenBabel::CreateAtom(OpenBabel::Pattern*, OpenBabel::AtomExpr*, int, int)': [INFO] [stderr] warning: openbabel/src/parsmart.cpp:446:15: warning: variable 'size' set but not used [-Wunused-but-set-variable] [INFO] [stderr] warning: 446 | int index,size; [INFO] [stderr] warning: | ^~~~ [INFO] [stderr] warning: openbabel/src/parsmart.cpp: In function 'int OpenBabel::CreateBond(OpenBabel::Pattern*, OpenBabel::BondExpr*, int, int)': [INFO] [stderr] warning: openbabel/src/parsmart.cpp:478:15: warning: variable 'size' set but not used [-Wunused-but-set-variable] [INFO] [stderr] warning: 478 | int index,size; [INFO] [stderr] warning: | ^~~~ [INFO] [stderr] warning: At global scope: [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-extra-tokens' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-c99-extensions' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-unused-private-field' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-reorder-ctor' [INFO] [stderr] warning: In file included from openbabel/include/openbabel/rotamer.h:27, [INFO] [stderr] warning: from openbabel/src/mol.cpp:25: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:833:43: warning: implicitly-declared 'OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 833 | {return new OBVibrationData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:835:23: note: because 'OpenBabel::OBVibrationData' has user-provided 'OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)' [INFO] [stderr] warning: 835 | OBVibrationData & operator=(const OBVibrationData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:878:37: warning: implicitly-declared 'OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 878 | {return new OBDOSData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:880:17: note: because 'OpenBabel::OBDOSData' has user-provided 'OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)' [INFO] [stderr] warning: 880 | OBDOSData & operator=(const OBDOSData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:925:41: warning: implicitly-declared 'OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 925 | {return new OBOrbitalData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:927:21: note: because 'OpenBabel::OBOrbitalData' has user-provided 'OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)' [INFO] [stderr] warning: 927 | OBOrbitalData & operator=(const OBOrbitalData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: In file included from openbabel/include/openbabel/rotamer.h:27, [INFO] [stderr] warning: from openbabel/src/mol.cpp:25: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:985:54: warning: implicitly-declared 'OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 985 | {return new OBElectronicTransitionData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:987:34: note: because 'OpenBabel::OBElectronicTransitionData' has user-provided 'OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)' [INFO] [stderr] warning: 987 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/src/mol.cpp: In member function 'unsigned int OpenBabel::OBMol::NumHvyAtoms() const': [INFO] [stderr] warning: openbabel/src/mol.cpp:809:36: warning: unnecessary parentheses in declaration of 'i' [-Wparentheses] [INFO] [stderr] warning: 809 | vector::const_iterator(i); [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/src/mol.cpp: In member function 'bool OpenBabel::OBMol::CopySubstructure(OpenBabel::OBMol&, OpenBabel::OBBitVec*, OpenBabel::OBBitVec*, unsigned int, std::vector*, std::vector*)': [INFO] [stderr] warning: openbabel/src/mol.cpp:4210:59: warning: enumeral and non-enumeral type in conditional expression [-Wextra] [INFO] [stderr] warning: 4210 | newcfg.begin = cfg.begin == OBStereo::ImplicitRef ? OBStereo::ImplicitRef : AtomMap[GetAtomById(cfg.begin)]->GetId(); [INFO] [stderr] warning: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel/src/mol.cpp:4211:55: warning: enumeral and non-enumeral type in conditional expression [-Wextra] [INFO] [stderr] warning: 4211 | newcfg.end = cfg.end == OBStereo::ImplicitRef ? OBStereo::ImplicitRef : AtomMap[GetAtomById(cfg.end)]->GetId(); [INFO] [stderr] warning: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel/src/mol.cpp:4214:60: warning: enumeral and non-enumeral type in conditional expression [-Wextra] [INFO] [stderr] warning: 4214 | OBStereo::Ref ref = *ri == OBStereo::ImplicitRef ? OBStereo::ImplicitRef : AtomMap[GetAtomById(*ri)]->GetId(); [INFO] [stderr] warning: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel/src/mol.cpp:4257:57: warning: enumeral and non-enumeral type in conditional expression [-Wextra] [INFO] [stderr] warning: 4257 | newcfg.from = cfg.from == OBStereo::ImplicitRef ? OBStereo::ImplicitRef : AtomMap[GetAtomById(cfg.from)]->GetId(); [INFO] [stderr] warning: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel/src/mol.cpp:4260:60: warning: enumeral and non-enumeral type in conditional expression [-Wextra] [INFO] [stderr] warning: 4260 | OBStereo::Ref ref = *ri == OBStereo::ImplicitRef ? OBStereo::ImplicitRef : AtomMap[GetAtomById(*ri)]->GetId(); [INFO] [stderr] warning: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: At global scope: [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-extra-tokens' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-c99-extensions' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-unused-private-field' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-reorder-ctor' [INFO] [stderr] warning: In file included from openbabel/src/transform.cpp:21: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:833:43: warning: implicitly-declared 'OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 833 | {return new OBVibrationData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:835:23: note: because 'OpenBabel::OBVibrationData' has user-provided 'OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)' [INFO] [stderr] warning: 835 | OBVibrationData & operator=(const OBVibrationData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:878:37: warning: implicitly-declared 'OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 878 | {return new OBDOSData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:880:17: note: because 'OpenBabel::OBDOSData' has user-provided 'OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)' [INFO] [stderr] warning: 880 | OBDOSData & operator=(const OBDOSData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:925:41: warning: implicitly-declared 'OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 925 | {return new OBOrbitalData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:927:21: note: because 'OpenBabel::OBOrbitalData' has user-provided 'OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)' [INFO] [stderr] warning: 927 | OBOrbitalData & operator=(const OBOrbitalData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: In file included from openbabel/src/transform.cpp:21: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:985:54: warning: implicitly-declared 'OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 985 | {return new OBElectronicTransitionData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:987:34: note: because 'OpenBabel::OBElectronicTransitionData' has user-provided 'OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)' [INFO] [stderr] warning: 987 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: At global scope: [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-extra-tokens' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-c99-extensions' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-unused-private-field' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-reorder-ctor' [INFO] [stderr] warning: In file included from openbabel/src/reactionfacade.cpp:23: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:833:43: warning: implicitly-declared 'OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 833 | {return new OBVibrationData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:835:23: note: because 'OpenBabel::OBVibrationData' has user-provided 'OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)' [INFO] [stderr] warning: 835 | OBVibrationData & operator=(const OBVibrationData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:878:37: warning: implicitly-declared 'OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 878 | {return new OBDOSData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:880:17: note: because 'OpenBabel::OBDOSData' has user-provided 'OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)' [INFO] [stderr] warning: 880 | OBDOSData & operator=(const OBDOSData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:925:41: warning: implicitly-declared 'OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 925 | {return new OBOrbitalData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:927:21: note: because 'OpenBabel::OBOrbitalData' has user-provided 'OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)' [INFO] [stderr] warning: 927 | OBOrbitalData & operator=(const OBOrbitalData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: In file included from openbabel/src/reactionfacade.cpp:23: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:985:54: warning: implicitly-declared 'OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 985 | {return new OBElectronicTransitionData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:987:34: note: because 'OpenBabel::OBElectronicTransitionData' has user-provided 'OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)' [INFO] [stderr] warning: 987 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: At global scope: [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-extra-tokens' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-c99-extensions' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-unused-private-field' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-reorder-ctor' [INFO] [stderr] warning: In file included from openbabel/src/stereo/perception.cpp:34: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:833:43: warning: implicitly-declared 'OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 833 | {return new OBVibrationData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:835:23: note: because 'OpenBabel::OBVibrationData' has user-provided 'OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)' [INFO] [stderr] warning: 835 | OBVibrationData & operator=(const OBVibrationData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:878:37: warning: implicitly-declared 'OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 878 | {return new OBDOSData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:880:17: note: because 'OpenBabel::OBDOSData' has user-provided 'OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)' [INFO] [stderr] warning: 880 | OBDOSData & operator=(const OBDOSData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:925:41: warning: implicitly-declared 'OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 925 | {return new OBOrbitalData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:927:21: note: because 'OpenBabel::OBOrbitalData' has user-provided 'OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)' [INFO] [stderr] warning: 927 | OBOrbitalData & operator=(const OBOrbitalData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: In file included from openbabel/src/stereo/perception.cpp:34: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:985:54: warning: implicitly-declared 'OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 985 | {return new OBElectronicTransitionData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:987:34: note: because 'OpenBabel::OBElectronicTransitionData' has user-provided 'OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)' [INFO] [stderr] warning: 987 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/src/stereo/perception.cpp: In function 'bool OpenBabel::TetStereoToWedgeHash(OpenBabel::OBMol&, std::map&, std::map&)': [INFO] [stderr] warning: openbabel/src/stereo/perception.cpp:2795:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] [INFO] [stderr] warning: 2795 | for (std::vector::iterator data = vdata.begin(); data != vdata.end(); ++data) [INFO] [stderr] warning: | ^~~ [INFO] [stderr] warning: openbabel/src/stereo/perception.cpp:2951:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' [INFO] [stderr] warning: 2951 | return true; [INFO] [stderr] warning: | ^~~~~~ [INFO] [stderr] warning: At global scope: [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-extra-tokens' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-c99-extensions' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-unused-private-field' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-reorder-ctor' [INFO] [stderr] warning: In file included from openbabel/src/formats/smilesformat.cpp:30: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBVibrationData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:833:43: warning: implicitly-declared 'OpenBabel::OBVibrationData::OBVibrationData(const OpenBabel::OBVibrationData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 833 | {return new OBVibrationData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:835:23: note: because 'OpenBabel::OBVibrationData' has user-provided 'OpenBabel::OBVibrationData& OpenBabel::OBVibrationData::operator=(const OpenBabel::OBVibrationData&)' [INFO] [stderr] warning: 835 | OBVibrationData & operator=(const OBVibrationData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBDOSData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:878:37: warning: implicitly-declared 'OpenBabel::OBDOSData::OBDOSData(const OpenBabel::OBDOSData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 878 | {return new OBDOSData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:880:17: note: because 'OpenBabel::OBDOSData' has user-provided 'OpenBabel::OBDOSData& OpenBabel::OBDOSData::operator=(const OpenBabel::OBDOSData&)' [INFO] [stderr] warning: 880 | OBDOSData & operator=(const OBDOSData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBOrbitalData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:925:41: warning: implicitly-declared 'OpenBabel::OBOrbitalData::OBOrbitalData(const OpenBabel::OBOrbitalData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 925 | {return new OBOrbitalData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:927:21: note: because 'OpenBabel::OBOrbitalData' has user-provided 'OpenBabel::OBOrbitalData& OpenBabel::OBOrbitalData::operator=(const OpenBabel::OBOrbitalData&)' [INFO] [stderr] warning: 927 | OBOrbitalData & operator=(const OBOrbitalData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: In file included from openbabel/src/formats/smilesformat.cpp:30: [INFO] [stderr] warning: openbabel/include/openbabel/generic.h: In member function 'virtual OpenBabel::OBGenericData* OpenBabel::OBElectronicTransitionData::Clone(OpenBabel::OBBase*) const': [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:985:54: warning: implicitly-declared 'OpenBabel::OBElectronicTransitionData::OBElectronicTransitionData(const OpenBabel::OBElectronicTransitionData&)' is deprecated [-Wdeprecated-copy] [INFO] [stderr] warning: 985 | {return new OBElectronicTransitionData(*this);} [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/include/openbabel/generic.h:987:34: note: because 'OpenBabel::OBElectronicTransitionData' has user-provided 'OpenBabel::OBElectronicTransitionData& OpenBabel::OBElectronicTransitionData::operator=(const OpenBabel::OBElectronicTransitionData&)' [INFO] [stderr] warning: 987 | OBElectronicTransitionData & operator=(const OBElectronicTransitionData &); [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/src/formats/smilesformat.cpp: In constructor 'OpenBabel::OBSmilesParser::OBSmilesParser(bool)': [INFO] [stderr] warning: openbabel/src/formats/smilesformat.cpp:291:10: warning: 'OpenBabel::OBSmilesParser::_preserve_aromaticity' will be initialized after [-Wreorder] [INFO] [stderr] warning: 291 | bool _preserve_aromaticity; [INFO] [stderr] warning: | ^~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel/src/formats/smilesformat.cpp:289:9: warning: 'int OpenBabel::OBSmilesParser::_rxnrole' [-Wreorder] [INFO] [stderr] warning: 289 | int _rxnrole; [INFO] [stderr] warning: | ^~~~~~~~ [INFO] [stderr] warning: openbabel/src/formats/smilesformat.cpp:318:5: warning: when initialized here [-Wreorder] [INFO] [stderr] warning: 318 | OBSmilesParser(bool preserve_aromaticity=false): _preserve_aromaticity(preserve_aromaticity), _rxnrole(1) { } [INFO] [stderr] warning: | ^~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel/src/formats/smilesformat.cpp: In member function 'bool OpenBabel::OBSmilesParser::ParseSmiles(OpenBabel::OBMol&, const string&)': [INFO] [stderr] warning: openbabel/src/formats/smilesformat.cpp:655:15: warning: variable 'atom' set but not used [-Wunused-but-set-variable] [INFO] [stderr] warning: 655 | OBAtom* atom; [INFO] [stderr] warning: | ^~~~ [INFO] [stderr] warning: openbabel/src/formats/smilesformat.cpp: In member function 'void OpenBabel::OBSmilesParser::CreateCisTrans(OpenBabel::OBMol&)': [INFO] [stderr] warning: openbabel/src/formats/smilesformat.cpp:844:56: warning: enumeral and non-enumeral type in conditional expression [-Wextra] [INFO] [stderr] warning: 844 | unsigned int second = (other_bond[0] == nullptr) ? OBStereo::ImplicitRef : other_bond[0]->GetNbrAtom(a1)->GetId(); [INFO] [stderr] warning: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel/src/formats/smilesformat.cpp:845:56: warning: enumeral and non-enumeral type in conditional expression [-Wextra] [INFO] [stderr] warning: 845 | unsigned int fourth = (other_bond[1] == nullptr) ? OBStereo::ImplicitRef : other_bond[1]->GetNbrAtom(a2)->GetId(); [INFO] [stderr] warning: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel/src/formats/smilesformat.cpp: In member function 'bool OpenBabel::OBMol2Cansmi::GetSmilesElement(OpenBabel::OBCanSmiNode*, std::vector&, std::vector&, std::string&)': [INFO] [stderr] warning: openbabel/src/formats/smilesformat.cpp:2685:10: warning: variable 'symbol' set but not used [-Wunused-but-set-variable] [INFO] [stderr] warning: 2685 | char symbol[10]; [INFO] [stderr] warning: | ^~~~~~ [INFO] [stderr] warning: openbabel/src/formats/smilesformat.cpp: In member function 'bool OpenBabel::OBSmilesParser::ParseComplex(OpenBabel::OBMol&)': [INFO] [stderr] warning: openbabel/src/formats/smilesformat.cpp:1694:9: warning: this statement may fall through [-Wimplicit-fallthrough=] [INFO] [stderr] warning: 1694 | } [INFO] [stderr] warning: | ^ [INFO] [stderr] warning: openbabel/src/formats/smilesformat.cpp:1697:7: note: here [INFO] [stderr] warning: 1697 | default: [INFO] [stderr] warning: | ^~~~~~~ [INFO] [stderr] warning: At global scope: [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-extra-tokens' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-c99-extensions' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-unused-private-field' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-reorder-ctor' [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp: In function 'unsigned int OpenBabel::ECFPHash(unsigned char*, unsigned int)': [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:115:14: warning: this statement may fall through [-Wimplicit-fallthrough=] [INFO] [stderr] warning: 115 | case 11: c += ((unsigned int)ptr[10]<<24); [INFO] [stderr] warning: | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:116:3: note: here [INFO] [stderr] warning: 116 | case 10: c += ((unsigned int)ptr[9]<<16); [INFO] [stderr] warning: | ^~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:116:14: warning: this statement may fall through [-Wimplicit-fallthrough=] [INFO] [stderr] warning: 116 | case 10: c += ((unsigned int)ptr[9]<<16); [INFO] [stderr] warning: | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:117:3: note: here [INFO] [stderr] warning: 117 | case 9: c += ((unsigned int)ptr[8]<<8); [INFO] [stderr] warning: | ^~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:117:14: warning: this statement may fall through [-Wimplicit-fallthrough=] [INFO] [stderr] warning: 117 | case 9: c += ((unsigned int)ptr[8]<<8); [INFO] [stderr] warning: | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:118:3: note: here [INFO] [stderr] warning: 118 | case 8: b += ((unsigned int)ptr[7]<<24); [INFO] [stderr] warning: | ^~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:118:14: warning: this statement may fall through [-Wimplicit-fallthrough=] [INFO] [stderr] warning: 118 | case 8: b += ((unsigned int)ptr[7]<<24); [INFO] [stderr] warning: | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:119:3: note: here [INFO] [stderr] warning: 119 | case 7: b += ((unsigned int)ptr[6]<<16); [INFO] [stderr] warning: | ^~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:119:14: warning: this statement may fall through [-Wimplicit-fallthrough=] [INFO] [stderr] warning: 119 | case 7: b += ((unsigned int)ptr[6]<<16); [INFO] [stderr] warning: | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:120:3: note: here [INFO] [stderr] warning: 120 | case 6: b += ((unsigned int)ptr[5]<<8); [INFO] [stderr] warning: | ^~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:120:14: warning: this statement may fall through [-Wimplicit-fallthrough=] [INFO] [stderr] warning: 120 | case 6: b += ((unsigned int)ptr[5]<<8); [INFO] [stderr] warning: | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:121:3: note: here [INFO] [stderr] warning: 121 | case 5: b += ptr[4]; [INFO] [stderr] warning: | ^~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:121:14: warning: this statement may fall through [-Wimplicit-fallthrough=] [INFO] [stderr] warning: 121 | case 5: b += ptr[4]; [INFO] [stderr] warning: | ~~^~~~~~~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:122:3: note: here [INFO] [stderr] warning: 122 | case 4: a += ((unsigned int)ptr[3]<<24); [INFO] [stderr] warning: | ^~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:122:14: warning: this statement may fall through [-Wimplicit-fallthrough=] [INFO] [stderr] warning: 122 | case 4: a += ((unsigned int)ptr[3]<<24); [INFO] [stderr] warning: | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:123:3: note: here [INFO] [stderr] warning: 123 | case 3: a += ((unsigned int)ptr[2]<<16); [INFO] [stderr] warning: | ^~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:123:14: warning: this statement may fall through [-Wimplicit-fallthrough=] [INFO] [stderr] warning: 123 | case 3: a += ((unsigned int)ptr[2]<<16); [INFO] [stderr] warning: | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:124:3: note: here [INFO] [stderr] warning: 124 | case 2: a += ((unsigned int)ptr[1]<<8); [INFO] [stderr] warning: | ^~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:124:14: warning: this statement may fall through [-Wimplicit-fallthrough=] [INFO] [stderr] warning: 124 | case 2: a += ((unsigned int)ptr[1]<<8); [INFO] [stderr] warning: | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:125:3: note: here [INFO] [stderr] warning: 125 | case 1: a += ptr[0]; [INFO] [stderr] warning: | ^~~~ [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp: In function 'unsigned int OpenBabel::ECFPHash(std::vector&)': [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:149:14: warning: this statement may fall through [-Wimplicit-fallthrough=] [INFO] [stderr] warning: 149 | case 2: b += v[i+1]; [INFO] [stderr] warning: openbabel/src/fingerprints/fingerecfp.cpp:150:3: note: here [INFO] [stderr] warning: 150 | case 1: a += v[i]; [INFO] [stderr] warning: | ^~~~ [INFO] [stderr] warning: At global scope: [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-extra-tokens' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-c99-extensions' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-unused-private-field' [INFO] [stderr] warning: cc1plus: warning: unrecognized command line option '-Wno-reorder-ctor' [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.48s [INFO] [stdout] [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/openbabel_sys-e818e551f9f37d98) [INFO] [stdout] running 3 tests [INFO] [stdout] test tests::test::test_smarts_pattern ... ok [INFO] [stderr] ============================== [INFO] [stderr] *** Open Babel Error in ReadPatternFile [INFO] [stderr] Cannot open patterns.txt [INFO] [stderr] [INFO] [stderr] ============================== [INFO] [stderr] *** Open Babel Error in ReadPatternFile [INFO] [stderr] Cannot open SMARTS_InteLigand.txt [INFO] [stderr] [INFO] [stdout] test tests::test::test_fingerprint ... ok [INFO] [stderr] Doc-tests openbabel_sys [INFO] [stdout] test tests::test::test_mol ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 3 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "c35e8af06eb0cf58730a14e0763dfd7f40f42283a5fbc2da9f1ec104fc3bbbfe", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c35e8af06eb0cf58730a14e0763dfd7f40f42283a5fbc2da9f1ec104fc3bbbfe", kill_on_drop: false }` [INFO] [stdout] c35e8af06eb0cf58730a14e0763dfd7f40f42283a5fbc2da9f1ec104fc3bbbfe