[INFO] fetching crate openmm-sys 7.4.1... [INFO] documenting openmm-sys-7.4.1 against beta-2022-05-20 for beta-1.62-rustdoc-1 [INFO] extracting crate openmm-sys 7.4.1 into /workspace/builds/worker-24/source [INFO] validating manifest of crates.io crate openmm-sys 7.4.1 on toolchain beta-2022-05-20 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-05-20" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate openmm-sys 7.4.1 [INFO] finished tweaking crates.io crate openmm-sys 7.4.1 [INFO] tweaked toml for crates.io crate openmm-sys 7.4.1 written to /workspace/builds/worker-24/source/Cargo.toml [INFO] crate crates.io crate openmm-sys 7.4.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-05-20" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-24/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-24/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d190cb871061d98bc6d0581d85cb2ecb09a0f8a142ba5463de30be9999fc3251" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-05-20" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 56e1d5bda87368b388df570141302e7531244893293f57fbaca75c3d1ba33111 [INFO] running `Command { std: "docker" "start" "-a" "56e1d5bda87368b388df570141302e7531244893293f57fbaca75c3d1ba33111", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "56e1d5bda87368b388df570141302e7531244893293f57fbaca75c3d1ba33111", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "56e1d5bda87368b388df570141302e7531244893293f57fbaca75c3d1ba33111", kill_on_drop: false }` [INFO] [stdout] 56e1d5bda87368b388df570141302e7531244893293f57fbaca75c3d1ba33111 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-24/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-24/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d190cb871061d98bc6d0581d85cb2ecb09a0f8a142ba5463de30be9999fc3251" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-05-20" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 023558f096948bf0242f6b3c46e743d7a305203cbe8d22e8121cf91247fe3b78 [INFO] running `Command { std: "docker" "start" "-a" "023558f096948bf0242f6b3c46e743d7a305203cbe8d22e8121cf91247fe3b78", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling cc v1.0.59 [INFO] [stderr] Compiling cmake v0.1.44 [INFO] [stderr] Compiling openmm-sys v7.4.1 (/opt/rustwide/workdir) [INFO] [stderr] The following warnings were emitted during compilation: [INFO] [stderr] [INFO] [stderr] warning: [OpenMM-sys] Dynamically linking against the OpenMM library. [INFO] [stderr] [INFO] [stderr] error: failed to run custom build command for `openmm-sys v7.4.1 (/opt/rustwide/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/openmm-sys-dbbbcb1980d6f73e/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:warning=[OpenMM-sys] Dynamically linking against the OpenMM library. [INFO] [stderr] running: "cmake" "/opt/rustwide/workdir/openmm" "-DOPENMM_BUILD_PYTHON_WRAPPERS=OFF" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/openmm-sys-9389d78ee739b4eb/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Release" [INFO] [stderr] -- Found PythonInterp: /usr/bin/python (found version "2.7.18") [INFO] [stderr] -- The C compiler identification is GNU 9.4.0 [INFO] [stderr] -- The CXX compiler identification is GNU 9.4.0 [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Configuring incomplete, errors occurred! [INFO] [stderr] See also "/opt/rustwide/target/debug/build/openmm-sys-9389d78ee739b4eb/out/build/CMakeFiles/CMakeOutput.log". [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] fatal: not a git repository (or any parent up to mount point /opt/rustwide) [INFO] [stderr] Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). [INFO] [stderr] CMake Deprecation Warning at CMakeLists.txt:25 (CMAKE_POLICY): [INFO] [stderr] The OLD behavior for policy CMP0042 will be removed from a future version [INFO] [stderr] of CMake. [INFO] [stderr] [INFO] [stderr] The cmake-policies(7) manual explains that the OLD behaviors of all [INFO] [stderr] policies are deprecated and that a policy should be set to OLD only under [INFO] [stderr] specific short-term circumstances. Projects should be ported to the NEW [INFO] [stderr] behavior and not rely on setting a policy to OLD. [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Error at /usr/share/cmake-3.16/Modules/FindPackageHandleStandardArgs.cmake:146 (message): [INFO] [stderr] Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) [INFO] [stderr] Call Stack (most recent call first): [INFO] [stderr] /usr/share/cmake-3.16/Modules/FindPackageHandleStandardArgs.cmake:393 (_FPHSA_FAILURE_MESSAGE) [INFO] [stderr] /usr/share/cmake-3.16/Modules/FindDoxygen.cmake:633 (find_package_handle_standard_args) [INFO] [stderr] wrappers/CMakeLists.txt:1 (find_package) [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] thread 'main' panicked at ' [INFO] [stderr] command did not execute successfully, got: exit status: 1 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:885:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x562ae9c95ded - std::backtrace_rs::backtrace::libunwind::trace::ha8406fd4a233ad1f [INFO] [stderr] at /rustc/daf68b1f766e67ffe040260b15c218301853386a/library/std/src/../../backtrace/src/backtrace/libunwind.rs:93:5 [INFO] [stderr] 1: 0x562ae9c95ded - std::backtrace_rs::backtrace::trace_unsynchronized::h95f26ca4bd23bd0f [INFO] [stderr] at /rustc/daf68b1f766e67ffe040260b15c218301853386a/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x562ae9c95ded - std::sys_common::backtrace::_print_fmt::h9955f0b025c061cd [INFO] [stderr] at /rustc/daf68b1f766e67ffe040260b15c218301853386a/library/std/src/sys_common/backtrace.rs:66:5 [INFO] [stderr] 3: 0x562ae9c95ded - ::fmt::h1025ecd2bac85833 [INFO] [stderr] at /rustc/daf68b1f766e67ffe040260b15c218301853386a/library/std/src/sys_common/backtrace.rs:45:22 [INFO] [stderr] 4: 0x562ae9cb62ac - core::fmt::write::hd5fa34bae8a7f0ea [INFO] [stderr] at /rustc/daf68b1f766e67ffe040260b15c218301853386a/library/core/src/fmt/mod.rs:1196:17 [INFO] [stderr] 5: 0x562ae9c92a11 - std::io::Write::write_fmt::h203cec764662c27d [INFO] [stderr] at /rustc/daf68b1f766e67ffe040260b15c218301853386a/library/std/src/io/mod.rs:1654:15 [INFO] [stderr] 6: 0x562ae9c97635 - std::sys_common::backtrace::_print::h330c8fadbab13d8b [INFO] [stderr] at /rustc/daf68b1f766e67ffe040260b15c218301853386a/library/std/src/sys_common/backtrace.rs:48:5 [INFO] [stderr] 7: 0x562ae9c97635 - std::sys_common::backtrace::print::h38d4cf1c3e16e656 [INFO] [stderr] at /rustc/daf68b1f766e67ffe040260b15c218301853386a/library/std/src/sys_common/backtrace.rs:35:9 [INFO] [stderr] 8: 0x562ae9c97635 - std::panicking::default_hook::{{closure}}::h56cdf194ec124abb [INFO] [stderr] at /rustc/daf68b1f766e67ffe040260b15c218301853386a/library/std/src/panicking.rs:295:22 [INFO] [stderr] 9: 0x562ae9c972a9 - std::panicking::default_hook::h9929fdc60733f795 [INFO] [stderr] at /rustc/daf68b1f766e67ffe040260b15c218301853386a/library/std/src/panicking.rs:314:9 [INFO] [stderr] 10: 0x562ae9c97c08 - std::panicking::rust_panic_with_hook::h490228be5a55104d [INFO] [stderr] at /rustc/daf68b1f766e67ffe040260b15c218301853386a/library/std/src/panicking.rs:698:17 [INFO] [stderr] 11: 0x562ae9c97ab7 - std::panicking::begin_panic_handler::{{closure}}::hfd963b6683c36656 [INFO] [stderr] at /rustc/daf68b1f766e67ffe040260b15c218301853386a/library/std/src/panicking.rs:588:13 [INFO] [stderr] 12: 0x562ae9c962a4 - std::sys_common::backtrace::__rust_end_short_backtrace::h2912e3decfe2cba4 [INFO] [stderr] at /rustc/daf68b1f766e67ffe040260b15c218301853386a/library/std/src/sys_common/backtrace.rs:138:18 [INFO] [stderr] 13: 0x562ae9c977e9 - rust_begin_unwind [INFO] [stderr] at /rustc/daf68b1f766e67ffe040260b15c218301853386a/library/std/src/panicking.rs:584:5 [INFO] [stderr] 14: 0x562ae9c1f833 - core::panicking::panic_fmt::hf4ba906a2c8693a2 [INFO] [stderr] at /rustc/daf68b1f766e67ffe040260b15c218301853386a/library/core/src/panicking.rs:142:14 [INFO] [stderr] 15: 0x562ae9c2ce2d - cmake::fail::h357c5c8e6e458320 [INFO] [stderr] 16: 0x562ae9c2c86e - cmake::run::h3c1dc906d6a4cac4 [INFO] [stderr] 17: 0x562ae9c28ea5 - cmake::Config::build::h51e18da886b0dc96 [INFO] [stderr] 18: 0x562ae9c223e9 - build_script_build::main::hb107d226af2f1028 [INFO] [stderr] 19: 0x562ae9c238b3 - core::ops::function::FnOnce::call_once::h80a766a02906e5a3 [INFO] [stderr] 20: 0x562ae9c250b9 - std::sys_common::backtrace::__rust_begin_short_backtrace::hc2e8008d24cea1f8 [INFO] [stderr] 21: 0x562ae9c23869 - std::rt::lang_start::{{closure}}::hc30964507cce54cc [INFO] [stderr] 22: 0x562ae9c8e84e - core::ops::function::impls:: for &F>::call_once::h9c80b603d656db3f [INFO] [stderr] at /rustc/daf68b1f766e67ffe040260b15c218301853386a/library/core/src/ops/function.rs:280:13 [INFO] [stderr] 23: 0x562ae9c8e84e - std::panicking::try::do_call::h86b1dd6fd2903147 [INFO] [stderr] at /rustc/daf68b1f766e67ffe040260b15c218301853386a/library/std/src/panicking.rs:492:40 [INFO] [stderr] 24: 0x562ae9c8e84e - std::panicking::try::h06cba322e163361a [INFO] [stderr] at /rustc/daf68b1f766e67ffe040260b15c218301853386a/library/std/src/panicking.rs:456:19 [INFO] [stderr] 25: 0x562ae9c8e84e - std::panic::catch_unwind::h77fc4ef3c419c34e [INFO] [stderr] at /rustc/daf68b1f766e67ffe040260b15c218301853386a/library/std/src/panic.rs:137:14 [INFO] [stderr] 26: 0x562ae9c8e84e - std::rt::lang_start_internal::{{closure}}::h6786ee70f1cf45dc [INFO] [stderr] at /rustc/daf68b1f766e67ffe040260b15c218301853386a/library/std/src/rt.rs:128:48 [INFO] [stderr] 27: 0x562ae9c8e84e - std::panicking::try::do_call::h682a3324f06cc1bc [INFO] [stderr] at /rustc/daf68b1f766e67ffe040260b15c218301853386a/library/std/src/panicking.rs:492:40 [INFO] [stderr] 28: 0x562ae9c8e84e - std::panicking::try::h09ce465b693a7cf9 [INFO] [stderr] at /rustc/daf68b1f766e67ffe040260b15c218301853386a/library/std/src/panicking.rs:456:19 [INFO] [stderr] 29: 0x562ae9c8e84e - std::panic::catch_unwind::h5eb4cb244476317c [INFO] [stderr] at /rustc/daf68b1f766e67ffe040260b15c218301853386a/library/std/src/panic.rs:137:14 [INFO] [stderr] 30: 0x562ae9c8e84e - std::rt::lang_start_internal::hba2d4a4771a618dc [INFO] [stderr] at /rustc/daf68b1f766e67ffe040260b15c218301853386a/library/std/src/rt.rs:128:20 [INFO] [stderr] 31: 0x562ae9c23851 - std::rt::lang_start::h88799bb530254b44 [INFO] [stderr] 32: 0x562ae9c22e93 - main [INFO] [stderr] 33: 0x7fe8475e60b3 - __libc_start_main [INFO] [stderr] 34: 0x562ae9c1fa2e - _start [INFO] [stderr] 35: 0x0 - [INFO] running `Command { std: "docker" "inspect" "023558f096948bf0242f6b3c46e743d7a305203cbe8d22e8121cf91247fe3b78", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "023558f096948bf0242f6b3c46e743d7a305203cbe8d22e8121cf91247fe3b78", kill_on_drop: false }` [INFO] [stdout] 023558f096948bf0242f6b3c46e743d7a305203cbe8d22e8121cf91247fe3b78