[INFO] fetching crate edlib_rs 0.1.2... [INFO] documenting edlib_rs-0.1.2 against beta-2022-05-20 for beta-1.62-rustdoc-1 [INFO] extracting crate edlib_rs 0.1.2 into /workspace/builds/worker-13/source [INFO] validating manifest of crates.io crate edlib_rs 0.1.2 on toolchain beta-2022-05-20 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-05-20" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate edlib_rs 0.1.2 [INFO] finished tweaking crates.io crate edlib_rs 0.1.2 [INFO] tweaked toml for crates.io crate edlib_rs 0.1.2 written to /workspace/builds/worker-13/source/Cargo.toml [INFO] crate crates.io crate edlib_rs 0.1.2 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-05-20" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d190cb871061d98bc6d0581d85cb2ecb09a0f8a142ba5463de30be9999fc3251" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-05-20" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] ec5fe934d8559b4c1bf7632275021e17fc1d2d8766de22b02f3f12dbb20a8784 [INFO] running `Command { std: "docker" "start" "-a" "ec5fe934d8559b4c1bf7632275021e17fc1d2d8766de22b02f3f12dbb20a8784", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "ec5fe934d8559b4c1bf7632275021e17fc1d2d8766de22b02f3f12dbb20a8784", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ec5fe934d8559b4c1bf7632275021e17fc1d2d8766de22b02f3f12dbb20a8784", kill_on_drop: false }` [INFO] [stdout] ec5fe934d8559b4c1bf7632275021e17fc1d2d8766de22b02f3f12dbb20a8784 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d190cb871061d98bc6d0581d85cb2ecb09a0f8a142ba5463de30be9999fc3251" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-05-20" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 1139548be6c704cb0f1282163a47ad26535737b8c22740d6c72988bf1a827c7c [INFO] running `Command { std: "docker" "start" "-a" "1139548be6c704cb0f1282163a47ad26535737b8c22740d6c72988bf1a827c7c", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.76 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling cc v1.0.59 [INFO] [stderr] Compiling pkg-config v0.3.18 [INFO] [stderr] Compiling log v0.4.11 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling version_check v0.9.2 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling proc-macro2 v1.0.19 [INFO] [stderr] Compiling libloading v0.6.3 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling unicode-width v0.1.8 [INFO] [stderr] Compiling regex-syntax v0.6.18 [INFO] [stderr] Compiling unicode-xid v0.2.1 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling termcolor v1.1.0 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling bindgen v0.55.1 [INFO] [stderr] Compiling crc32fast v1.2.0 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Checking adler v0.2.3 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling shlex v0.1.1 [INFO] [stderr] Checking safemem v0.3.3 [INFO] [stderr] Checking bytecount v0.6.0 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Compiling humantime v1.3.0 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Checking miniz_oxide v0.4.1 [INFO] [stderr] Compiling cmake v0.1.45 [INFO] [stderr] Compiling clang-sys v1.0.0 [INFO] [stderr] Compiling aho-corasick v0.7.13 [INFO] [stderr] Checking buf_redux v0.8.4 [INFO] [stderr] Compiling lzma-sys v0.1.16 [INFO] [stderr] Compiling bzip2-sys v0.1.9+1.0.8 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Checking flate2 v1.0.17 [INFO] [stderr] Checking cpu-time v1.0.0 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling regex v1.3.9 [INFO] [stderr] Checking xz2 v0.1.6 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Checking bzip2 v0.3.3 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Checking needletail v0.4.0 [INFO] [stderr] Compiling edlib_rs v0.1.2 (/opt/rustwide/workdir) [INFO] [stderr] Documenting edlib_rs v0.1.2 (/opt/rustwide/workdir) [INFO] [stdout] warning: unresolved link to `in` [INFO] [stdout] --> /opt/rustwide/target/debug/build/edlib_rs-bcd3b02b3c4471cd/out/bindings.rs:3:13532 [INFO] [stdout] | [INFO] [stdout] 3 | ... { # [ doc = " Aligns two sequences (query and target) using edit distance (levenshtein distance)." ] # [ doc = " Through config parameter, this function supports different alignment methods (global, prefix, infix)," ] # [ doc = " as well as different modes of search (tasks)." ] # [ doc = " It always returns edit distance and end locations of optimal alignment in target." ] # [ doc = " It optionally returns start locations of optimal alignment in target and alignment path," ] # [ doc = " if you choose appropriate tasks." ] # [ doc = " @param [in] query First sequence." ] # [ doc = " @param [in] queryLength Number of characters in first sequence." ] # [ doc = " @param [in] target Second sequence." ] # [ doc = " @param [in] targetLength Number of characters in second sequence." ] # [ doc = " @param [in] config Additional alignment parameters, like alignment method and wanted results." ] # [ doc = " @return Result of alignment, which can contain edit distance, start and end locations and alignment path." ] # [ doc = " Make sure to clean up the object using edlibFreeAlignResult() or by manually freeing needed members." ] pu... [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(rustdoc::broken_intra_doc_links)]` on by default [INFO] [stdout] = note: the link appears in this line: [INFO] [stdout] [INFO] [stdout] @param [in] query First sequence. [INFO] [stdout] ^^ [INFO] [stdout] = note: no item named `in` in scope [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `in` [INFO] [stdout] --> /opt/rustwide/target/debug/build/edlib_rs-bcd3b02b3c4471cd/out/bindings.rs:3:14952 [INFO] [stdout] | [INFO] [stdout] 3 | ... { # [ doc = " Builds cigar string from given alignment sequence." ] # [ doc = " @param [in] alignment Alignment sequence." ] # [ doc = " 0 stands for match." ] # [ doc = " 1 stands for insertion to target." ] # [ doc = " 2 stands for insertion to query." ] # [ doc = " 3 stands for mismatch." ] # [ doc = " @param [in] alignmentLength" ] # [ doc = " @param [in] cigarFormat Cigar will be returned in specified format." ] # [ doc = " @return Cigar string." ] # [ doc = " I stands for insertion." ] # [ doc = " D stands for deletion." ] # [ doc = " X stands for mismatch. (used only in extended format)" ] # [ doc = " = stands for match. (used only in extended format)" ] # [ doc = " M stands for (mis)match. (used only in standard format)" ] # [ doc = " String is null terminated." ] # [ doc = " Needed memory is allocated and given pointer is set to it." ] # [ doc = " Do not forget to free it later using free()!" ] pu... [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: the link appears in this line: [INFO] [stdout] [INFO] [stdout] @param [in] alignment Alignment sequence. [INFO] [stdout] ^^ [INFO] [stdout] = note: no item named `in` in scope [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: this URL is not a hyperlink [INFO] [stdout] --> /opt/rustwide/target/debug/build/edlib_rs-bcd3b02b3c4471cd/out/bindings.rs:3:3090 [INFO] [stdout] | [INFO] [stdout] 3 | ... ; # [ doc = " Describes cigar format." ] # [ doc = " @see http://samtools.github.io/hts-specs/SAMv1.pdf" ] # [ doc = " @see http://drive5.com/usearch/manual/cigar.html" ] pu... [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use an automatic link instead: `` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(rustdoc::bare_urls)]` on by default [INFO] [stdout] = note: bare URLs are not automatically turned into clickable links [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: this URL is not a hyperlink [INFO] [stdout] --> /opt/rustwide/target/debug/build/edlib_rs-bcd3b02b3c4471cd/out/bindings.rs:3:3090 [INFO] [stdout] | [INFO] [stdout] 3 | ... ; # [ doc = " Describes cigar format." ] # [ doc = " @see http://samtools.github.io/hts-specs/SAMv1.pdf" ] # [ doc = " @see http://drive5.com/usearch/manual/cigar.html" ] pu... [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use an automatic link instead: `` [INFO] [stdout] | [INFO] [stdout] = note: bare URLs are not automatically turned into clickable links [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: this URL is not a hyperlink [INFO] [stdout] --> src/edlibrs.rs:74:9 [INFO] [stdout] | [INFO] [stdout] 74 | /// see http://samtools.github.io/hts-specs/SAMv1.pdf [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use an automatic link instead: `` [INFO] [stdout] | [INFO] [stdout] = note: bare URLs are not automatically turned into clickable links [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: this URL is not a hyperlink [INFO] [stdout] --> src/edlibrs.rs:75:8 [INFO] [stdout] | [INFO] [stdout] 75 | ///see http://drive5.com/usearch/manual/cigar.html [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use an automatic link instead: `` [INFO] [stdout] | [INFO] [stdout] = note: bare URLs are not automatically turned into clickable links [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 6 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 42.83s [INFO] running `Command { std: "docker" "inspect" "1139548be6c704cb0f1282163a47ad26535737b8c22740d6c72988bf1a827c7c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "1139548be6c704cb0f1282163a47ad26535737b8c22740d6c72988bf1a827c7c", kill_on_drop: false }` [INFO] [stdout] 1139548be6c704cb0f1282163a47ad26535737b8c22740d6c72988bf1a827c7c [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTC_BOOTSTRAP=1" "-e" "DOCS_RS=1" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d190cb871061d98bc6d0581d85cb2ecb09a0f8a142ba5463de30be9999fc3251" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-05-20" "rustdoc" "--lib" "-Zrustdoc-map" "--frozen" "--message-format=json" "--" "-Z" "unstable-options" "--document-private-items", kill_on_drop: false }` [INFO] [stdout] 681a1b605dd84c60d2612a5170d6fbbef40fbd0d56a116b25c42bcd7bd54921b [INFO] running `Command { std: "docker" "start" "-a" "681a1b605dd84c60d2612a5170d6fbbef40fbd0d56a116b25c42bcd7bd54921b", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling libc v0.2.76 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling cc v1.0.59 [INFO] [stderr] Compiling pkg-config v0.3.18 [INFO] [stderr] Compiling log v0.4.11 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling version_check v0.9.2 [INFO] [stderr] Compiling libloading v0.6.3 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling proc-macro2 v1.0.19 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling unicode-width v0.1.8 [INFO] [stderr] Compiling regex-syntax v0.6.18 [INFO] [stderr] Compiling unicode-xid v0.2.1 [INFO] [stderr] Compiling termcolor v1.1.0 [INFO] [stderr] Compiling crc32fast v1.2.0 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling bindgen v0.55.1 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Checking adler v0.2.3 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling shlex v0.1.1 [INFO] [stderr] Checking safemem v0.3.3 [INFO] [stderr] Checking bytecount v0.6.0 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling humantime v1.3.0 [INFO] [stderr] Checking miniz_oxide v0.4.1 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Checking aho-corasick v0.7.13 [INFO] [stderr] Checking buf_redux v0.8.4 [INFO] [stderr] Compiling clang-sys v1.0.0 [INFO] [stderr] Compiling cmake v0.1.45 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Compiling bzip2-sys v0.1.9+1.0.8 [INFO] [stderr] Compiling lzma-sys v0.1.16 [INFO] [stderr] Checking flate2 v1.0.17 [INFO] [stderr] Checking cpu-time v1.0.0 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Checking regex v1.3.9 [INFO] [stderr] Checking xz2 v0.1.6 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Checking env_logger v0.7.1 [INFO] [stderr] Checking bzip2 v0.3.3 [INFO] [stderr] Checking needletail v0.4.0 [INFO] [stderr] Compiling edlib_rs v0.1.2 (/opt/rustwide/workdir) [INFO] [stderr] Documenting edlib_rs v0.1.2 (/opt/rustwide/workdir) [INFO] [stdout] warning: unresolved link to `in` [INFO] [stdout] --> /opt/rustwide/target/debug/build/edlib_rs-bcd3b02b3c4471cd/out/bindings.rs:3:13532 [INFO] [stdout] | [INFO] [stdout] 3 | ... { # [ doc = " Aligns two sequences (query and target) using edit distance (levenshtein distance)." ] # [ doc = " Through config parameter, this function supports different alignment methods (global, prefix, infix)," ] # [ doc = " as well as different modes of search (tasks)." ] # [ doc = " It always returns edit distance and end locations of optimal alignment in target." ] # [ doc = " It optionally returns start locations of optimal alignment in target and alignment path," ] # [ doc = " if you choose appropriate tasks." ] # [ doc = " @param [in] query First sequence." ] # [ doc = " @param [in] queryLength Number of characters in first sequence." ] # [ doc = " @param [in] target Second sequence." ] # [ doc = " @param [in] targetLength Number of characters in second sequence." ] # [ doc = " @param [in] config Additional alignment parameters, like alignment method and wanted results." ] # [ doc = " @return Result of alignment, which can contain edit distance, start and end locations and alignment path." ] # [ doc = " Make sure to clean up the object using edlibFreeAlignResult() or by manually freeing needed members." ] pu... [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(rustdoc::broken_intra_doc_links)]` on by default [INFO] [stdout] = note: the link appears in this line: [INFO] [stdout] [INFO] [stdout] @param [in] query First sequence. [INFO] [stdout] ^^ [INFO] [stdout] = note: no item named `in` in scope [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `in` [INFO] [stdout] --> /opt/rustwide/target/debug/build/edlib_rs-bcd3b02b3c4471cd/out/bindings.rs:3:14952 [INFO] [stdout] | [INFO] [stdout] 3 | ... { # [ doc = " Builds cigar string from given alignment sequence." ] # [ doc = " @param [in] alignment Alignment sequence." ] # [ doc = " 0 stands for match." ] # [ doc = " 1 stands for insertion to target." ] # [ doc = " 2 stands for insertion to query." ] # [ doc = " 3 stands for mismatch." ] # [ doc = " @param [in] alignmentLength" ] # [ doc = " @param [in] cigarFormat Cigar will be returned in specified format." ] # [ doc = " @return Cigar string." ] # [ doc = " I stands for insertion." ] # [ doc = " D stands for deletion." ] # [ doc = " X stands for mismatch. (used only in extended format)" ] # [ doc = " = stands for match. (used only in extended format)" ] # [ doc = " M stands for (mis)match. (used only in standard format)" ] # [ doc = " String is null terminated." ] # [ doc = " Needed memory is allocated and given pointer is set to it." ] # [ doc = " Do not forget to free it later using free()!" ] pu... [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: the link appears in this line: [INFO] [stdout] [INFO] [stdout] @param [in] alignment Alignment sequence. [INFO] [stdout] ^^ [INFO] [stdout] = note: no item named `in` in scope [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: this URL is not a hyperlink [INFO] [stdout] --> /opt/rustwide/target/debug/build/edlib_rs-bcd3b02b3c4471cd/out/bindings.rs:3:3090 [INFO] [stdout] | [INFO] [stdout] 3 | ... ; # [ doc = " Describes cigar format." ] # [ doc = " @see http://samtools.github.io/hts-specs/SAMv1.pdf" ] # [ doc = " @see http://drive5.com/usearch/manual/cigar.html" ] pu... [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use an automatic link instead: `` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(rustdoc::bare_urls)]` on by default [INFO] [stdout] = note: bare URLs are not automatically turned into clickable links [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: this URL is not a hyperlink [INFO] [stdout] --> /opt/rustwide/target/debug/build/edlib_rs-bcd3b02b3c4471cd/out/bindings.rs:3:3090 [INFO] [stdout] | [INFO] [stdout] 3 | ... ; # [ doc = " Describes cigar format." ] # [ doc = " @see http://samtools.github.io/hts-specs/SAMv1.pdf" ] # [ doc = " @see http://drive5.com/usearch/manual/cigar.html" ] pu... [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use an automatic link instead: `` [INFO] [stdout] | [INFO] [stdout] = note: bare URLs are not automatically turned into clickable links [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 14.47s [INFO] [stdout] warning: this URL is not a hyperlink [INFO] [stdout] --> src/edlibrs.rs:74:9 [INFO] [stdout] | [INFO] [stdout] 74 | /// see http://samtools.github.io/hts-specs/SAMv1.pdf [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use an automatic link instead: `` [INFO] [stdout] | [INFO] [stdout] = note: bare URLs are not automatically turned into clickable links [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: this URL is not a hyperlink [INFO] [stdout] --> src/edlibrs.rs:75:8 [INFO] [stdout] | [INFO] [stdout] 75 | ///see http://drive5.com/usearch/manual/cigar.html [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use an automatic link instead: `` [INFO] [stdout] | [INFO] [stdout] = note: bare URLs are not automatically turned into clickable links [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 6 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "681a1b605dd84c60d2612a5170d6fbbef40fbd0d56a116b25c42bcd7bd54921b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "681a1b605dd84c60d2612a5170d6fbbef40fbd0d56a116b25c42bcd7bd54921b", kill_on_drop: false }` [INFO] [stdout] 681a1b605dd84c60d2612a5170d6fbbef40fbd0d56a116b25c42bcd7bd54921b