[INFO] cloning repository https://github.com/stjude/fqlib [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/stjude/fqlib" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstjude%2Ffqlib", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstjude%2Ffqlib'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] c9bebc4e2bb47bc81b4738975d8497cb7d1efa88 [INFO] documenting stjude/fqlib against beta-2022-05-20 for beta-1.62-rustdoc-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstjude%2Ffqlib" "/workspace/builds/worker-9/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-9/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/stjude/fqlib on toolchain beta-2022-05-20 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-05-20" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/stjude/fqlib [INFO] finished tweaking git repo https://github.com/stjude/fqlib [INFO] tweaked toml for git repo https://github.com/stjude/fqlib written to /workspace/builds/worker-9/source/Cargo.toml [INFO] crate git repo https://github.com/stjude/fqlib already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-05-20" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d190cb871061d98bc6d0581d85cb2ecb09a0f8a142ba5463de30be9999fc3251" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-05-20" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 30df1538df0a51600c5d989e46bf95d0699dee4bc74925183b4f0c000cb64a40 [INFO] running `Command { std: "docker" "start" "-a" "30df1538df0a51600c5d989e46bf95d0699dee4bc74925183b4f0c000cb64a40", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "30df1538df0a51600c5d989e46bf95d0699dee4bc74925183b4f0c000cb64a40", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "30df1538df0a51600c5d989e46bf95d0699dee4bc74925183b4f0c000cb64a40", kill_on_drop: false }` [INFO] [stdout] 30df1538df0a51600c5d989e46bf95d0699dee4bc74925183b4f0c000cb64a40 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d190cb871061d98bc6d0581d85cb2ecb09a0f8a142ba5463de30be9999fc3251" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-05-20" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] d032d1aa9d65458e0bc961dafe6adf4673b3e6be5bb53e1e789e24deeee6c63b [INFO] running `Command { std: "docker" "start" "-a" "d032d1aa9d65458e0bc961dafe6adf4673b3e6be5bb53e1e789e24deeee6c63b", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.126 [INFO] [stderr] Checking cfg-if v1.0.0 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Compiling log v0.4.17 [INFO] [stderr] Compiling libm v0.2.2 [INFO] [stderr] Compiling itoa v1.0.2 [INFO] [stderr] Compiling time-macros v0.2.4 [INFO] [stderr] Checking ppv-lite86 v0.2.16 [INFO] [stderr] Compiling num_threads v0.1.6 [INFO] [stderr] Compiling radium v0.7.0 [INFO] [stderr] Compiling anyhow v1.0.57 [INFO] [stderr] Checking adler v1.0.2 [INFO] [stderr] Checking strsim v0.10.0 [INFO] [stderr] Checking no-std-compat v0.4.1 [INFO] [stderr] Checking bit-vec v0.5.1 [INFO] [stderr] Checking funty v2.0.0 [INFO] [stderr] Checking pin-project-lite v0.2.9 [INFO] [stderr] Checking bytecount v0.6.2 [INFO] [stderr] Compiling num-traits v0.2.15 [INFO] [stderr] Checking wyz v0.5.0 [INFO] [stderr] Checking thread_local v1.1.4 [INFO] [stderr] Checking tracing-core v0.1.26 [INFO] [stderr] Checking sharded-slab v0.1.4 [INFO] [stderr] Checking miniz_oxide v0.5.1 [INFO] [stderr] Checking crc32fast v1.3.2 [INFO] [stderr] Compiling tracing-attributes v0.1.21 [INFO] [stderr] Checking tracing-log v0.1.3 [INFO] [stderr] Checking bitvec v1.0.0 [INFO] [stderr] Checking tracing-subscriber v0.3.11 [INFO] [stderr] Checking getrandom v0.2.6 [INFO] [stderr] Checking atty v0.2.14 [INFO] [stderr] Checking bbloom v0.1.0 (https://github.com/zaeleus/bbloom.git?tag=v0.1.0#2c9f6163) [INFO] [stderr] Checking flate2 v1.0.23 [INFO] [stderr] Compiling time v0.3.9 [INFO] [stderr] Checking clap v3.1.18 [INFO] [stderr] Checking rand_core v0.6.3 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Checking rand v0.8.5 [INFO] [stderr] Compiling git-testament-derive v0.1.13 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Checking tracing v0.1.34 [INFO] [stderr] Checking git-testament v0.2.1 [INFO] [stderr] Documenting fq v0.9.1 (/opt/rustwide/workdir) [INFO] [stdout] warning: unresolved link to `P001` [INFO] [stdout] --> src/validators/paired/names.rs:6:6 [INFO] [stdout] | [INFO] [stdout] 6 | /// [P001] (medium) Validator to check if each paired read name is the same, excluding interleave. [INFO] [stdout] | ^^^^ no item named `P001` in scope [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(rustdoc::broken_intra_doc_links)]` on by default [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `S002` [INFO] [stdout] --> src/validators/single/alphabet.rs:6:6 [INFO] [stdout] | [INFO] [stdout] 6 | /// [S002] (medium) Validator to check if all the characters in the sequence line are included in a [INFO] [stdout] | ^^^^ no item named `S002` in scope [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `S004` [INFO] [stdout] --> src/validators/single/complete.rs:6:6 [INFO] [stdout] | [INFO] [stdout] 6 | /// [S004] (low) Validator to check if all four record lines (name, sequence, plus line, and [INFO] [stdout] | ^^^^ no item named `S004` in scope [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `S005` [INFO] [stdout] --> src/validators/single/consistent_seq_qual.rs:6:6 [INFO] [stdout] | [INFO] [stdout] 6 | /// [S005] (high) Validator to check if the sequence and quality lengths are the same. [INFO] [stdout] | ^^^^ no item named `S005` in scope [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `S007` [INFO] [stdout] --> src/validators/single/duplicate_name.rs:13:6 [INFO] [stdout] | [INFO] [stdout] 13 | /// [S007] (high) Validator to check if all record names are unique. [INFO] [stdout] | ^^^^ no item named `S007` in scope [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `S003` [INFO] [stdout] --> src/validators/single/name.rs:6:6 [INFO] [stdout] | [INFO] [stdout] 6 | /// [S003] (high) Validator to check if the name line starts with an "@". [INFO] [stdout] | ^^^^ no item named `S003` in scope [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `S001` [INFO] [stdout] --> src/validators/single/plus_line.rs:6:6 [INFO] [stdout] | [INFO] [stdout] 6 | /// [S001] (low) Validator to check if the plus line starts with a "+". [INFO] [stdout] | ^^^^ no item named `S001` in scope [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `S006` [INFO] [stdout] --> src/validators/single/quality_string.rs:6:6 [INFO] [stdout] | [INFO] [stdout] 6 | /// [S006] (medium) Validator to check if all the characters in the quality line are between "!" and [INFO] [stdout] | ^^^^ no item named `S006` in scope [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 8 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 44.24s [INFO] running `Command { std: "docker" "inspect" "d032d1aa9d65458e0bc961dafe6adf4673b3e6be5bb53e1e789e24deeee6c63b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d032d1aa9d65458e0bc961dafe6adf4673b3e6be5bb53e1e789e24deeee6c63b", kill_on_drop: false }` [INFO] [stdout] d032d1aa9d65458e0bc961dafe6adf4673b3e6be5bb53e1e789e24deeee6c63b [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "DOCS_RS=1" "-e" "RUSTC_BOOTSTRAP=1" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d190cb871061d98bc6d0581d85cb2ecb09a0f8a142ba5463de30be9999fc3251" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-05-20" "rustdoc" "--lib" "-Zrustdoc-map" "--frozen" "--message-format=json" "--" "-Z" "unstable-options" "--document-private-items", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] ff1c9a7c325a93d3de924300c2305ecc44a3cdf49f55993b219be3a788f07de8 [INFO] running `Command { std: "docker" "start" "-a" "ff1c9a7c325a93d3de924300c2305ecc44a3cdf49f55993b219be3a788f07de8", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.126 [INFO] [stderr] Checking cfg-if v1.0.0 [INFO] [stderr] Compiling proc-macro2 v1.0.39 [INFO] [stderr] Compiling autocfg v1.1.0 [INFO] [stderr] Compiling unicode-ident v1.0.0 [INFO] [stderr] Compiling syn v1.0.95 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Compiling libm v0.2.2 [INFO] [stderr] Compiling log v0.4.17 [INFO] [stderr] Compiling num_threads v0.1.6 [INFO] [stderr] Compiling time-macros v0.2.4 [INFO] [stderr] Compiling crc32fast v1.3.2 [INFO] [stderr] Compiling radium v0.7.0 [INFO] [stderr] Checking ppv-lite86 v0.2.16 [INFO] [stderr] Compiling itoa v1.0.2 [INFO] [stderr] Checking once_cell v1.12.0 [INFO] [stderr] Checking adler v1.0.2 [INFO] [stderr] Compiling anyhow v1.0.57 [INFO] [stderr] Checking os_str_bytes v6.0.1 [INFO] [stderr] Checking tap v1.0.1 [INFO] [stderr] Checking hashbrown v0.11.2 [INFO] [stderr] Checking funty v2.0.0 [INFO] [stderr] Checking bitflags v1.3.2 [INFO] [stderr] Checking no-std-compat v0.4.1 [INFO] [stderr] Checking smallvec v1.8.0 [INFO] [stderr] Checking ansi_term v0.12.1 [INFO] [stderr] Checking termcolor v1.1.3 [INFO] [stderr] Checking textwrap v0.15.0 [INFO] [stderr] Checking pin-project-lite v0.2.9 [INFO] [stderr] Checking bit-vec v0.5.1 [INFO] [stderr] Checking strsim v0.10.0 [INFO] [stderr] Checking bytecount v0.6.2 [INFO] [stderr] Checking tracing-core v0.1.26 [INFO] [stderr] Checking sharded-slab v0.1.4 [INFO] [stderr] Checking miniz_oxide v0.5.1 [INFO] [stderr] Checking thread_local v1.1.4 [INFO] [stderr] Checking wyz v0.5.0 [INFO] [stderr] Checking clap_lex v0.2.0 [INFO] [stderr] Compiling indexmap v1.8.1 [INFO] [stderr] Compiling num-traits v0.2.15 [INFO] [stderr] Checking tracing-log v0.1.3 [INFO] [stderr] Checking bitvec v1.0.0 [INFO] [stderr] Compiling quote v1.0.18 [INFO] [stderr] Checking tracing-subscriber v0.3.11 [INFO] [stderr] Checking getrandom v0.2.6 [INFO] [stderr] Checking atty v0.2.14 [INFO] [stderr] Checking flate2 v1.0.23 [INFO] [stderr] Checking bbloom v0.1.0 (https://github.com/zaeleus/bbloom.git?tag=v0.1.0#2c9f6163) [INFO] [stderr] Compiling time v0.3.9 [INFO] [stderr] Checking clap v3.1.18 [INFO] [stderr] Checking rand_core v0.6.3 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Checking rand v0.8.5 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Compiling tracing-attributes v0.1.21 [INFO] [stderr] Compiling git-testament-derive v0.1.13 [INFO] [stderr] Checking git-testament v0.2.1 [INFO] [stderr] Checking tracing v0.1.34 [INFO] [stderr] Documenting fq v0.9.1 (/opt/rustwide/workdir) [INFO] [stdout] warning: unresolved link to `P001` [INFO] [stdout] --> src/validators/paired/names.rs:6:6 [INFO] [stdout] | [INFO] [stdout] 6 | /// [P001] (medium) Validator to check if each paired read name is the same, excluding interleave. [INFO] [stdout] | ^^^^ no item named `P001` in scope [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(rustdoc::broken_intra_doc_links)]` on by default [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `S002` [INFO] [stdout] --> src/validators/single/alphabet.rs:6:6 [INFO] [stdout] | [INFO] [stdout] 6 | /// [S002] (medium) Validator to check if all the characters in the sequence line are included in a [INFO] [stdout] | ^^^^ no item named `S002` in scope [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `S004` [INFO] [stdout] --> src/validators/single/complete.rs:6:6 [INFO] [stdout] | [INFO] [stdout] 6 | /// [S004] (low) Validator to check if all four record lines (name, sequence, plus line, and [INFO] [stdout] | ^^^^ no item named `S004` in scope [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `S005` [INFO] [stdout] --> src/validators/single/consistent_seq_qual.rs:6:6 [INFO] [stdout] | [INFO] [stdout] 6 | /// [S005] (high) Validator to check if the sequence and quality lengths are the same. [INFO] [stdout] | ^^^^ no item named `S005` in scope [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `S007` [INFO] [stdout] --> src/validators/single/duplicate_name.rs:13:6 [INFO] [stdout] | [INFO] [stdout] 13 | /// [S007] (high) Validator to check if all record names are unique. [INFO] [stdout] | ^^^^ no item named `S007` in scope [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `S003` [INFO] [stdout] --> src/validators/single/name.rs:6:6 [INFO] [stdout] | [INFO] [stdout] 6 | /// [S003] (high) Validator to check if the name line starts with an "@". [INFO] [stdout] | ^^^^ no item named `S003` in scope [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `S001` [INFO] [stdout] --> src/validators/single/plus_line.rs:6:6 [INFO] [stdout] | [INFO] [stdout] 6 | /// [S001] (low) Validator to check if the plus line starts with a "+". [INFO] [stdout] | ^^^^ no item named `S001` in scope [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `S006` [INFO] [stdout] --> src/validators/single/quality_string.rs:6:6 [INFO] [stdout] | [INFO] [stdout] 6 | /// [S006] (medium) Validator to check if all the characters in the quality line are between "!" and [INFO] [stdout] | ^^^^ no item named `S006` in scope [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 8 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1m 10s [INFO] running `Command { std: "docker" "inspect" "ff1c9a7c325a93d3de924300c2305ecc44a3cdf49f55993b219be3a788f07de8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ff1c9a7c325a93d3de924300c2305ecc44a3cdf49f55993b219be3a788f07de8", kill_on_drop: false }` [INFO] [stdout] ff1c9a7c325a93d3de924300c2305ecc44a3cdf49f55993b219be3a788f07de8