[INFO] cloning repository https://github.com/TianyiShi2001/rust-bio-edu [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/TianyiShi2001/rust-bio-edu" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FTianyiShi2001%2Frust-bio-edu", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FTianyiShi2001%2Frust-bio-edu'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 536024de8524eb19c08b4381de4f4f2152616c94 [INFO] documenting TianyiShi2001/rust-bio-edu against beta-2022-05-20 for beta-1.62-rustdoc-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FTianyiShi2001%2Frust-bio-edu" "/workspace/builds/worker-8/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-8/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/TianyiShi2001/rust-bio-edu on toolchain beta-2022-05-20 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-05-20" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/TianyiShi2001/rust-bio-edu [INFO] finished tweaking git repo https://github.com/TianyiShi2001/rust-bio-edu [INFO] tweaked toml for git repo https://github.com/TianyiShi2001/rust-bio-edu written to /workspace/builds/worker-8/source/Cargo.toml [INFO] crate git repo https://github.com/TianyiShi2001/rust-bio-edu already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-05-20" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d190cb871061d98bc6d0581d85cb2ecb09a0f8a142ba5463de30be9999fc3251" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-05-20" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] f6a87ecf5d7d8d9f92aadb73aee1086a7748f97897b3e77e7879d1fc79de57d7 [INFO] running `Command { std: "docker" "start" "-a" "f6a87ecf5d7d8d9f92aadb73aee1086a7748f97897b3e77e7879d1fc79de57d7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "f6a87ecf5d7d8d9f92aadb73aee1086a7748f97897b3e77e7879d1fc79de57d7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f6a87ecf5d7d8d9f92aadb73aee1086a7748f97897b3e77e7879d1fc79de57d7", kill_on_drop: false }` [INFO] [stdout] f6a87ecf5d7d8d9f92aadb73aee1086a7748f97897b3e77e7879d1fc79de57d7 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d190cb871061d98bc6d0581d85cb2ecb09a0f8a142ba5463de30be9999fc3251" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-05-20" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 55b611c6d1f2f2ff35f4914cf982bb8abf59701b64310d7ffadee1601f66c87e [INFO] running `Command { std: "docker" "start" "-a" "55b611c6d1f2f2ff35f4914cf982bb8abf59701b64310d7ffadee1601f66c87e", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.77 [INFO] [stderr] Compiling maybe-uninit v2.0.0 [INFO] [stderr] Compiling getrandom v0.1.15 [INFO] [stderr] Compiling proc-macro-hack v0.5.18 [INFO] [stderr] Compiling rayon-core v1.8.1 [INFO] [stderr] Compiling typenum v1.12.0 [INFO] [stderr] Checking ppv-lite86 v0.2.9 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Checking either v1.6.0 [INFO] [stderr] Compiling num-traits v0.2.12 [INFO] [stderr] Compiling crossbeam-utils v0.7.2 [INFO] [stderr] Compiling memoffset v0.5.5 [INFO] [stderr] Compiling crossbeam-epoch v0.8.2 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling num-integer v0.1.43 [INFO] [stderr] Compiling num-rational v0.2.4 [INFO] [stderr] Compiling rayon v1.4.1 [INFO] [stderr] Checking matrixmultiply v0.2.3 [INFO] [stderr] Compiling paste-impl v0.1.18 [INFO] [stderr] Checking num_cpus v1.13.0 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking generic-array v0.13.2 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking approx v0.3.2 [INFO] [stderr] Checking paste v0.1.18 [INFO] [stderr] Checking crossbeam-channel v0.4.4 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking crossbeam-deque v0.7.3 [INFO] [stderr] Checking simba v0.2.0 [INFO] [stderr] Checking rand_distr v0.2.2 [INFO] [stderr] Checking nalgebra v0.22.0 [INFO] [stderr] Documenting bio-edu v0.0.1 (/opt/rustwide/workdir) [INFO] [stdout] warning: could not parse code block as Rust code [INFO] [stdout] --> src/alignment/pairwise/needleman_wunsch_2.rs:76:5 [INFO] [stdout] | [INFO] [stdout] 76 | //! ```ignore [INFO] [stdout] | _____^ [INFO] [stdout] 77 | | //! | 0 1 2 3 4 5 6 [INFO] [stdout] 78 | | //! ––––––––––––––––––––––––– [INFO] [stdout] 79 | | //! 0 | [ 0 1 2 3 4 5 6 [INFO] [stdout] 80 | | //! 1 | 7 8 9 10 11 12 13 [INFO] [stdout] 81 | | //! 2 | 14 15 16 17 18 19 20 ] [INFO] [stdout] 82 | | //! ``` [INFO] [stdout] | |_______^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(rustdoc::invalid_rust_codeblocks)]` on by default [INFO] [stdout] help: `ignore` code blocks require valid Rust code for syntax highlighting; mark blocks that do not contain Rust code as text: ```text [INFO] [stdout] --> src/alignment/pairwise/needleman_wunsch_2.rs:76:5 [INFO] [stdout] | [INFO] [stdout] 76 | //! ```ignore [INFO] [stdout] | ^^^ [INFO] [stdout] = note: error from rustc: unknown start of token: \u{2013} [INFO] [stdout] = note: error from rustc: unknown start of token: \u{2013} [INFO] [stdout] = note: error from rustc: unknown start of token: \u{2013} [INFO] [stdout] = note: error from rustc: unknown start of token: \u{2013} [INFO] [stdout] = note: error from rustc: unknown start of token: \u{2013} [INFO] [stdout] = note: error from rustc: unknown start of token: \u{2013} [INFO] [stdout] = note: error from rustc: unknown start of token: \u{2013} [INFO] [stdout] = note: error from rustc: unknown start of token: \u{2013} [INFO] [stdout] = note: error from rustc: unknown start of token: \u{2013} [INFO] [stdout] = note: error from rustc: unknown start of token: \u{2013} [INFO] [stdout] = note: error from rustc: unknown start of token: \u{2013} [INFO] [stdout] = note: error from rustc: unknown start of token: \u{2013} [INFO] [stdout] = note: error from rustc: unknown start of token: \u{2013} [INFO] [stdout] = note: error from rustc: unknown start of token: \u{2013} [INFO] [stdout] = note: error from rustc: unknown start of token: \u{2013} [INFO] [stdout] = note: error from rustc: unknown start of token: \u{2013} [INFO] [stdout] = note: error from rustc: unknown start of token: \u{2013} [INFO] [stdout] = note: error from rustc: unknown start of token: \u{2013} [INFO] [stdout] = note: error from rustc: unknown start of token: \u{2013} [INFO] [stdout] = note: error from rustc: unknown start of token: \u{2013} [INFO] [stdout] = note: error from rustc: unknown start of token: \u{2013} [INFO] [stdout] = note: error from rustc: unknown start of token: \u{2013} [INFO] [stdout] = note: error from rustc: unknown start of token: \u{2013} [INFO] [stdout] = note: error from rustc: unknown start of token: \u{2013} [INFO] [stdout] = note: error from rustc: unknown start of token: \u{2013} [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: this URL is not a hyperlink [INFO] [stdout] --> src/alignment/scores.rs:31:7 [INFO] [stdout] | [INFO] [stdout] 31 | //! - https://www.mathworks.com/help/bioinfo/ref/aminolookup.html [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use an automatic link instead: `` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(rustdoc::bare_urls)]` on by default [INFO] [stdout] = note: bare URLs are not automatically turned into clickable links [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 2 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 14.14s [INFO] running `Command { std: "docker" "inspect" "55b611c6d1f2f2ff35f4914cf982bb8abf59701b64310d7ffadee1601f66c87e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "55b611c6d1f2f2ff35f4914cf982bb8abf59701b64310d7ffadee1601f66c87e", kill_on_drop: false }` [INFO] [stdout] 55b611c6d1f2f2ff35f4914cf982bb8abf59701b64310d7ffadee1601f66c87e [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "DOCS_RS=1" "-e" "RUSTC_BOOTSTRAP=1" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d190cb871061d98bc6d0581d85cb2ecb09a0f8a142ba5463de30be9999fc3251" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-05-20" "rustdoc" "--lib" "-Zrustdoc-map" "--frozen" "--message-format=json" "--" "-Z" "unstable-options" "--document-private-items", kill_on_drop: false }` [INFO] [stdout] d75ca5d172f8dfcbab74948087d4161b6dd891b9da644a673a11ea21126873a7 [INFO] running `Command { std: "docker" "start" "-a" "d75ca5d172f8dfcbab74948087d4161b6dd891b9da644a673a11ea21126873a7", kill_on_drop: false }` [INFO] [stderr] Compiling autocfg v1.0.1 [INFO] [stderr] Checking cfg-if v0.1.10 [INFO] [stderr] Compiling libc v0.2.77 [INFO] [stderr] Compiling maybe-uninit v2.0.0 [INFO] [stderr] Compiling getrandom v0.1.15 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Checking scopeguard v1.1.0 [INFO] [stderr] Checking ppv-lite86 v0.2.9 [INFO] [stderr] Compiling proc-macro-hack v0.5.18 [INFO] [stderr] Compiling rayon-core v1.8.1 [INFO] [stderr] Compiling typenum v1.12.0 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Checking either v1.6.0 [INFO] [stderr] Checking matrixmultiply v0.2.3 [INFO] [stderr] Compiling num-traits v0.2.12 [INFO] [stderr] Compiling crossbeam-utils v0.7.2 [INFO] [stderr] Compiling memoffset v0.5.5 [INFO] [stderr] Compiling crossbeam-epoch v0.8.2 [INFO] [stderr] Compiling num-integer v0.1.43 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling num-rational v0.2.4 [INFO] [stderr] Compiling rayon v1.4.1 [INFO] [stderr] Compiling paste-impl v0.1.18 [INFO] [stderr] Checking num_cpus v1.13.0 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking paste v0.1.18 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking generic-array v0.13.2 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking approx v0.3.2 [INFO] [stderr] Checking crossbeam-channel v0.4.4 [INFO] [stderr] Checking crossbeam-deque v0.7.3 [INFO] [stderr] Checking simba v0.2.0 [INFO] [stderr] Checking rand_distr v0.2.2 [INFO] [stderr] Checking nalgebra v0.22.0 [INFO] [stderr] Documenting bio-edu v0.0.1 (/opt/rustwide/workdir) [INFO] [stdout] warning: could not parse code block as Rust code [INFO] [stdout] --> src/alignment/pairwise/needleman_wunsch_2.rs:76:5 [INFO] [stdout] | [INFO] [stdout] 76 | //! ```ignore [INFO] [stdout] | _____^ [INFO] [stdout] 77 | | //! | 0 1 2 3 4 5 6 [INFO] [stdout] 78 | | //! ––––––––––––––––––––––––– [INFO] [stdout] 79 | | //! 0 | [ 0 1 2 3 4 5 6 [INFO] [stdout] 80 | | //! 1 | 7 8 9 10 11 12 13 [INFO] [stdout] 81 | | //! 2 | 14 15 16 17 18 19 20 ] [INFO] [stdout] 82 | | //! ``` [INFO] [stdout] | |_______^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(rustdoc::invalid_rust_codeblocks)]` on by default [INFO] [stdout] help: `ignore` code blocks require valid Rust code for syntax highlighting; mark blocks that do not contain Rust code as text: ```text [INFO] [stdout] --> src/alignment/pairwise/needleman_wunsch_2.rs:76:5 [INFO] [stdout] | [INFO] [stdout] 76 | //! ```ignore [INFO] [stdout] | ^^^ [INFO] [stdout] = note: error from rustc: unknown start of token: \u{2013} [INFO] [stdout] = note: error from rustc: unknown start of token: \u{2013} [INFO] [stdout] = note: error from rustc: unknown start of token: \u{2013} [INFO] [stdout] = note: error from rustc: unknown start of token: \u{2013} [INFO] [stdout] = note: error from rustc: unknown start of token: \u{2013} [INFO] [stdout] = note: error from rustc: unknown start of token: \u{2013} [INFO] [stdout] = note: error from rustc: unknown start of token: \u{2013} [INFO] [stdout] = note: error from rustc: unknown start of token: \u{2013} [INFO] [stdout] = note: error from rustc: unknown start of token: \u{2013} [INFO] [stdout] = note: error from rustc: unknown start of token: \u{2013} [INFO] [stdout] = note: error from rustc: unknown start of token: \u{2013} [INFO] [stdout] = note: error from rustc: unknown start of token: \u{2013} [INFO] [stdout] = note: error from rustc: unknown start of token: \u{2013} [INFO] [stdout] = note: error from rustc: unknown start of token: \u{2013} [INFO] [stdout] = note: error from rustc: unknown start of token: \u{2013} [INFO] [stdout] = note: error from rustc: unknown start of token: \u{2013} [INFO] [stdout] = note: error from rustc: unknown start of token: \u{2013} [INFO] [stdout] = note: error from rustc: unknown start of token: \u{2013} [INFO] [stdout] = note: error from rustc: unknown start of token: \u{2013} [INFO] [stdout] = note: error from rustc: unknown start of token: \u{2013} [INFO] [stdout] = note: error from rustc: unknown start of token: \u{2013} [INFO] [stdout] = note: error from rustc: unknown start of token: \u{2013} [INFO] [stdout] = note: error from rustc: unknown start of token: \u{2013} [INFO] [stdout] = note: error from rustc: unknown start of token: \u{2013} [INFO] [stdout] = note: error from rustc: unknown start of token: \u{2013} [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: this URL is not a hyperlink [INFO] [stdout] --> src/alignment/scores.rs:31:7 [INFO] [stdout] | [INFO] [stdout] 31 | //! - https://www.mathworks.com/help/bioinfo/ref/aminolookup.html [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use an automatic link instead: `` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(rustdoc::bare_urls)]` on by default [INFO] [stdout] = note: bare URLs are not automatically turned into clickable links [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 2 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 14.61s [INFO] running `Command { std: "docker" "inspect" "d75ca5d172f8dfcbab74948087d4161b6dd891b9da644a673a11ea21126873a7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d75ca5d172f8dfcbab74948087d4161b6dd891b9da644a673a11ea21126873a7", kill_on_drop: false }` [INFO] [stdout] d75ca5d172f8dfcbab74948087d4161b6dd891b9da644a673a11ea21126873a7