[INFO] cloning repository https://github.com/Curryrasul/labs-bioinformatics
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/Curryrasul/labs-bioinformatics" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FCurryrasul%2Flabs-bioinformatics", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FCurryrasul%2Flabs-bioinformatics'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] d40c7dae4f2955951b5f7fcef83c0c2e74fee2c2
[INFO] documenting Curryrasul/labs-bioinformatics against beta-2022-05-20 for beta-1.62-rustdoc-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FCurryrasul%2Flabs-bioinformatics" "/workspace/builds/worker-3/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-3/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/Curryrasul/labs-bioinformatics on toolchain beta-2022-05-20
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-05-20" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/Curryrasul/labs-bioinformatics
[INFO] finished tweaking git repo https://github.com/Curryrasul/labs-bioinformatics
[INFO] tweaked toml for git repo https://github.com/Curryrasul/labs-bioinformatics written to /workspace/builds/worker-3/source/Cargo.toml
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-05-20" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }`
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2022-05-20" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d190cb871061d98bc6d0581d85cb2ecb09a0f8a142ba5463de30be9999fc3251" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-05-20" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 8a645e51ec207d88cf3494153a3fd287cb4346ddd969eb6437c5b6459c4c0f46
[INFO] running `Command { std: "docker" "start" "-a" "8a645e51ec207d88cf3494153a3fd287cb4346ddd969eb6437c5b6459c4c0f46", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "8a645e51ec207d88cf3494153a3fd287cb4346ddd969eb6437c5b6459c4c0f46", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "8a645e51ec207d88cf3494153a3fd287cb4346ddd969eb6437c5b6459c4c0f46", kill_on_drop: false }`
[INFO] [stdout] 8a645e51ec207d88cf3494153a3fd287cb4346ddd969eb6437c5b6459c4c0f46
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d190cb871061d98bc6d0581d85cb2ecb09a0f8a142ba5463de30be9999fc3251" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-05-20" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 2025bed5231e2dbb97cc85c51c63b386ac446a3dd1dee8e2154d134b533d1467
[INFO] running `Command { std: "docker" "start" "-a" "2025bed5231e2dbb97cc85c51c63b386ac446a3dd1dee8e2154d134b533d1467", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Checking needleman-wunsch v0.1.0 (/opt/rustwide/workdir/needleman-wunsch)
[INFO] [stderr]  Documenting nw-affin v0.1.0 (/opt/rustwide/workdir/nw-affin)
[INFO] [stderr]  Documenting needleman-wunsch v0.1.0 (/opt/rustwide/workdir/needleman-wunsch)
[INFO] [stderr]  Documenting hirschberg v0.1.0 (/opt/rustwide/workdir/hirschberg)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 4.30s
[INFO] running `Command { std: "docker" "inspect" "2025bed5231e2dbb97cc85c51c63b386ac446a3dd1dee8e2154d134b533d1467", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2025bed5231e2dbb97cc85c51c63b386ac446a3dd1dee8e2154d134b533d1467", kill_on_drop: false }`
[INFO] [stdout] 2025bed5231e2dbb97cc85c51c63b386ac446a3dd1dee8e2154d134b533d1467
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "DOCS_RS=1" "-e" "RUSTC_BOOTSTRAP=1" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d190cb871061d98bc6d0581d85cb2ecb09a0f8a142ba5463de30be9999fc3251" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2022-05-20" "rustdoc" "--lib" "-Zrustdoc-map" "--frozen" "--message-format=json" "--" "-Z" "unstable-options" "--document-private-items", kill_on_drop: false }`
[INFO] [stdout] cbf735601e35b1debb58dc8f64af9f4693fa39dbff6abab8902b138c1cccb138
[INFO] running `Command { std: "docker" "start" "-a" "cbf735601e35b1debb58dc8f64af9f4693fa39dbff6abab8902b138c1cccb138", kill_on_drop: false }`
[INFO] [stderr] error: manifest path `/opt/rustwide/workdir/Cargo.toml` is a virtual manifest, but this command requires running against an actual package in this workspace
[INFO] running `Command { std: "docker" "inspect" "cbf735601e35b1debb58dc8f64af9f4693fa39dbff6abab8902b138c1cccb138", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "cbf735601e35b1debb58dc8f64af9f4693fa39dbff6abab8902b138c1cccb138", kill_on_drop: false }`
[INFO] [stdout] cbf735601e35b1debb58dc8f64af9f4693fa39dbff6abab8902b138c1cccb138