[INFO] fetching crate rdkit 0.2.6...
[INFO] documenting rdkit-0.2.6 against 1.61.0 for beta-1.62-rustdoc-1
[INFO] extracting crate rdkit 0.2.6 into /workspace/builds/worker-4/source
[INFO] validating manifest of crates.io crate rdkit 0.2.6 on toolchain 1.61.0
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.61.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate rdkit 0.2.6
[INFO] finished tweaking crates.io crate rdkit 0.2.6
[INFO] tweaked toml for crates.io crate rdkit 0.2.6 written to /workspace/builds/worker-4/source/Cargo.toml
[INFO] crate crates.io crate rdkit 0.2.6 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.61.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded rdkit-sys v0.2.8
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d190cb871061d98bc6d0581d85cb2ecb09a0f8a142ba5463de30be9999fc3251" "/opt/rustwide/cargo-home/bin/cargo" "+1.61.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 95c7e76e9d82658dba2644624e07a8fa509e7621a345867d66b5e16b99c22f2e
[INFO] running `Command { std: "docker" "start" "-a" "95c7e76e9d82658dba2644624e07a8fa509e7621a345867d66b5e16b99c22f2e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "95c7e76e9d82658dba2644624e07a8fa509e7621a345867d66b5e16b99c22f2e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "95c7e76e9d82658dba2644624e07a8fa509e7621a345867d66b5e16b99c22f2e", kill_on_drop: false }`
[INFO] [stdout] 95c7e76e9d82658dba2644624e07a8fa509e7621a345867d66b5e16b99c22f2e
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d190cb871061d98bc6d0581d85cb2ecb09a0f8a142ba5463de30be9999fc3251" "/opt/rustwide/cargo-home/bin/cargo" "+1.61.0" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] f2d5b1d59e65504459f7c64f18cf0a476e0dd1ec2f5d1243c08e4b7783075736
[INFO] running `Command { std: "docker" "start" "-a" "f2d5b1d59e65504459f7c64f18cf0a476e0dd1ec2f5d1243c08e4b7783075736", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling proc-macro2 v1.0.37
[INFO] [stderr]    Compiling cc v1.0.73
[INFO] [stderr]    Compiling syn v1.0.91
[INFO] [stderr]    Compiling libc v0.2.124
[INFO] [stderr]    Compiling log v0.4.16
[INFO] [stderr]    Compiling termcolor v1.1.3
[INFO] [stderr]    Compiling scratch v1.0.1
[INFO] [stderr]    Compiling unicode-width v0.1.9
[INFO] [stderr]    Compiling regex-syntax v0.6.25
[INFO] [stderr]    Compiling cfg-if v1.0.0
[INFO] [stderr]    Compiling cxxbridge-flags v1.0.67
[INFO] [stderr]    Compiling humantime v2.1.0
[INFO] [stderr]    Compiling once_cell v1.10.0
[INFO] [stderr]    Compiling crc32fast v1.3.2
[INFO] [stderr]     Checking miniz_oxide v0.5.1
[INFO] [stderr]    Compiling memchr v2.4.1
[INFO] [stderr]    Compiling codespan-reporting v0.11.1
[INFO] [stderr]    Compiling aho-corasick v0.7.18
[INFO] [stderr]    Compiling quote v1.0.18
[INFO] [stderr]    Compiling link-cplusplus v1.0.6
[INFO] [stderr]    Compiling cxx v1.0.67
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling regex v1.5.5
[INFO] [stderr]     Checking flate2 v1.0.23
[INFO] [stderr]    Compiling env_logger v0.9.0
[INFO] [stderr]    Compiling cxx-build v1.0.67
[INFO] [stderr]    Compiling cxxbridge-macro v1.0.67
[INFO] [stderr]    Compiling rdkit-sys v0.2.8
[INFO] [stderr] The following warnings were emitted during compilation:
[INFO] [stderr] 
[INFO] [stderr] warning: In file included from /opt/rustwide/target/debug/build/rdkit-sys-4021d05cd80ff5ec/out/cxxbridge/sources/rdkit-sys/src/bridge/fingerprint.rs.cc:1:
[INFO] [stderr] warning: /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/rdkit-sys-0.2.8/wrapper/include/ro_mol.h:4:10: fatal error: GraphMol/GraphMol.h: No such file or directory
[INFO] [stderr] warning:     4 | #include "GraphMol/GraphMol.h"
[INFO] [stderr] warning:       |          ^~~~~~~~~~~~~~~~~~~~~
[INFO] [stderr] warning: compilation terminated.
[INFO] [stderr] 
[INFO] [stderr] error: failed to run custom build command for `rdkit-sys v0.2.8`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/rdkit-sys-c847ad1265ae2ddc/build-script-build` (exit status: 1)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   cargo:CXXBRIDGE_PREFIX=rdkit-sys
[INFO] [stderr]   cargo:CXXBRIDGE_DIR0=/opt/rustwide/target/debug/build/rdkit-sys-4021d05cd80ff5ec/out/cxxbridge/include
[INFO] [stderr]   cargo:CXXBRIDGE_DIR1=/opt/rustwide/target/debug/build/rdkit-sys-4021d05cd80ff5ec/out/cxxbridge/crate
[INFO] [stderr]   TARGET = Some("x86_64-unknown-linux-gnu")
[INFO] [stderr]   OPT_LEVEL = Some("0")
[INFO] [stderr]   HOST = Some("x86_64-unknown-linux-gnu")
[INFO] [stderr]   CXX_x86_64-unknown-linux-gnu = None
[INFO] [stderr]   CXX_x86_64_unknown_linux_gnu = None
[INFO] [stderr]   HOST_CXX = None
[INFO] [stderr]   CXX = None
[INFO] [stderr]   CXXFLAGS_x86_64-unknown-linux-gnu = None
[INFO] [stderr]   CXXFLAGS_x86_64_unknown_linux_gnu = None
[INFO] [stderr]   HOST_CXXFLAGS = None
[INFO] [stderr]   CXXFLAGS = None
[INFO] [stderr]   CRATE_CC_NO_DEFAULTS = None
[INFO] [stderr]   DEBUG = Some("true")
[INFO] [stderr]   CARGO_CFG_TARGET_FEATURE = Some("fxsr,sse,sse2")
[INFO] [stderr]   running: "c++" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-g" "-fno-omit-frame-pointer" "-m64" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-4021d05cd80ff5ec/out/cxxbridge/include" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-4021d05cd80ff5ec/out/cxxbridge/crate" "-I" "/usr/include" "-I" "/usr/include/rdkit" "-I" "/opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/rdkit-sys-0.2.8" "-std=c++14" "-o" "/opt/rustwide/target/debug/build/rdkit-sys-4021d05cd80ff5ec/out/cxxbridge/sources/rdkit-sys/src/bridge/fingerprint.rs.o" "-c" "/opt/rustwide/target/debug/build/rdkit-sys-4021d05cd80ff5ec/out/cxxbridge/sources/rdkit-sys/src/bridge/fingerprint.rs.cc"
[INFO] [stderr]   cargo:warning=In file included from /opt/rustwide/target/debug/build/rdkit-sys-4021d05cd80ff5ec/out/cxxbridge/sources/rdkit-sys/src/bridge/fingerprint.rs.cc:1:
[INFO] [stderr]   cargo:warning=/opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/rdkit-sys-0.2.8/wrapper/include/ro_mol.h:4:10: fatal error: GraphMol/GraphMol.h: No such file or directory
[INFO] [stderr]   cargo:warning=    4 | #include "GraphMol/GraphMol.h"
[INFO] [stderr]   cargo:warning=      |          ^~~~~~~~~~~~~~~~~~~~~
[INFO] [stderr]   cargo:warning=compilation terminated.
[INFO] [stderr]   exit status: 1
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr] 
[INFO] [stderr]   CXX include path:
[INFO] [stderr]     /opt/rustwide/target/debug/build/rdkit-sys-4021d05cd80ff5ec/out/cxxbridge/include
[INFO] [stderr]     /opt/rustwide/target/debug/build/rdkit-sys-4021d05cd80ff5ec/out/cxxbridge/crate
[INFO] [stderr] 
[INFO] [stderr] 
[INFO] [stderr]   error occurred: Command "c++" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-g" "-fno-omit-frame-pointer" "-m64" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-4021d05cd80ff5ec/out/cxxbridge/include" "-I" "/opt/rustwide/target/debug/build/rdkit-sys-4021d05cd80ff5ec/out/cxxbridge/crate" "-I" "/usr/include" "-I" "/usr/include/rdkit" "-I" "/opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/rdkit-sys-0.2.8" "-std=c++14" "-o" "/opt/rustwide/target/debug/build/rdkit-sys-4021d05cd80ff5ec/out/cxxbridge/sources/rdkit-sys/src/bridge/fingerprint.rs.o" "-c" "/opt/rustwide/target/debug/build/rdkit-sys-4021d05cd80ff5ec/out/cxxbridge/sources/rdkit-sys/src/bridge/fingerprint.rs.cc" with args "c++" did not execute successfully (status code exit status: 1).
[INFO] [stderr] 
[INFO] [stderr] 
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] running `Command { std: "docker" "inspect" "f2d5b1d59e65504459f7c64f18cf0a476e0dd1ec2f5d1243c08e4b7783075736", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f2d5b1d59e65504459f7c64f18cf0a476e0dd1ec2f5d1243c08e4b7783075736", kill_on_drop: false }`
[INFO] [stdout] f2d5b1d59e65504459f7c64f18cf0a476e0dd1ec2f5d1243c08e4b7783075736