[INFO] fetching crate phylodm 2.0.0...
[INFO] documenting phylodm-2.0.0 against 1.61.0 for beta-1.62-rustdoc-1
[INFO] extracting crate phylodm 2.0.0 into /workspace/builds/worker-3/source
[INFO] validating manifest of crates.io crate phylodm 2.0.0 on toolchain 1.61.0
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.61.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate phylodm 2.0.0
[INFO] finished tweaking crates.io crate phylodm 2.0.0
[INFO] tweaked toml for crates.io crate phylodm 2.0.0 written to /workspace/builds/worker-3/source/Cargo.toml
[INFO] crate crates.io crate phylodm 2.0.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.61.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: only one of `license` or `license-file` is necessary
[INFO] [stderr] `license` should be used if the package license can be expressed with a standard SPDX expression.
[INFO] [stderr] `license-file` should be used if the package uses a non-standard license.
[INFO] [stderr] See https://doc.rust-lang.org/cargo/reference/manifest.html#the-license-and-license-file-fields for more information.
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded pyo3-ffi v0.16.4
[INFO] [stderr]   Downloaded target-lexicon v0.12.3
[INFO] [stderr]   Downloaded numpy v0.16.2
[INFO] [stderr]   Downloaded svg v0.8.2
[INFO] [stderr]   Downloaded random_color v0.5.1
[INFO] [stderr]   Downloaded roxmltree v0.14.1
[INFO] [stderr]   Downloaded getopt v1.1.3
[INFO] [stderr]   Downloaded indoc v1.0.4
[INFO] [stderr]   Downloaded pyo3-build-config v0.16.4
[INFO] [stderr]   Downloaded unindent v0.1.8
[INFO] [stderr]   Downloaded pyo3-macros-backend v0.16.4
[INFO] [stderr]   Downloaded pyo3 v0.16.4
[INFO] [stderr]   Downloaded pyo3-macros v0.16.4
[INFO] [stderr]   Downloaded light_phylogeny v1.4.2
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d190cb871061d98bc6d0581d85cb2ecb09a0f8a142ba5463de30be9999fc3251" "/opt/rustwide/cargo-home/bin/cargo" "+1.61.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] e735621a8f65956a51d96b5d22629dcd420072487a62db25464429a80463f556
[INFO] running `Command { std: "docker" "start" "-a" "e735621a8f65956a51d96b5d22629dcd420072487a62db25464429a80463f556", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "e735621a8f65956a51d96b5d22629dcd420072487a62db25464429a80463f556", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e735621a8f65956a51d96b5d22629dcd420072487a62db25464429a80463f556", kill_on_drop: false }`
[INFO] [stdout] e735621a8f65956a51d96b5d22629dcd420072487a62db25464429a80463f556
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d190cb871061d98bc6d0581d85cb2ecb09a0f8a142ba5463de30be9999fc3251" "/opt/rustwide/cargo-home/bin/cargo" "+1.61.0" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 6f3df92c831d37bca71a10f10537b65452a0476986dba7bd7a229941c77686a0
[INFO] running `Command { std: "docker" "start" "-a" "6f3df92c831d37bca71a10f10537b65452a0476986dba7bd7a229941c77686a0", kill_on_drop: false }`
[INFO] [stderr] warning: only one of `license` or `license-file` is necessary
[INFO] [stderr] `license` should be used if the package license can be expressed with a standard SPDX expression.
[INFO] [stderr] `license-file` should be used if the package uses a non-standard license.
[INFO] [stderr] See https://doc.rust-lang.org/cargo/reference/manifest.html#the-license-and-license-file-fields for more information.
[INFO] [stderr]    Compiling unicode-xid v0.2.2
[INFO] [stderr]    Compiling target-lexicon v0.12.3
[INFO] [stderr]    Compiling syn v1.0.89
[INFO] [stderr]    Compiling version_check v0.9.4
[INFO] [stderr]    Compiling memchr v2.4.1
[INFO] [stderr]    Compiling parking_lot_core v0.9.2
[INFO] [stderr]     Checking unicode-width v0.1.9
[INFO] [stderr]    Compiling log v0.4.16
[INFO] [stderr]     Checking smallvec v1.8.0
[INFO] [stderr]    Compiling unicode-segmentation v1.9.0
[INFO] [stderr]     Checking regex-syntax v0.6.25
[INFO] [stderr]    Compiling unindent v0.1.8
[INFO] [stderr]     Checking bitflags v1.3.2
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking strsim v0.8.0
[INFO] [stderr]     Checking ansi_term v0.12.1
[INFO] [stderr]     Checking xmlparser v0.13.3
[INFO] [stderr]     Checking humantime v2.1.0
[INFO] [stderr]     Checking lazy_static v1.4.0
[INFO] [stderr]     Checking getopt v1.1.3
[INFO] [stderr]    Compiling convert_case v0.4.0
[INFO] [stderr]     Checking svg v0.8.2
[INFO] [stderr]    Compiling num-traits v0.2.14
[INFO] [stderr]    Compiling lock_api v0.4.7
[INFO] [stderr]     Checking getrandom v0.1.16
[INFO] [stderr]    Compiling proc-macro2 v1.0.36
[INFO] [stderr]     Checking textwrap v0.11.0
[INFO] [stderr]     Checking rand_core v0.5.1
[INFO] [stderr]    Compiling heck v0.3.3
[INFO] [stderr]    Compiling indoc v1.0.4
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]     Checking roxmltree v0.14.1
[INFO] [stderr]     Checking rand_pcg v0.2.1
[INFO] [stderr]     Checking rand_chacha v0.2.2
[INFO] [stderr]     Checking clap v2.34.0
[INFO] [stderr]    Compiling quote v1.0.16
[INFO] [stderr]     Checking rand v0.7.3
[INFO] [stderr]     Checking aho-corasick v0.7.18
[INFO] [stderr]    Compiling pyo3-build-config v0.16.4
[INFO] [stderr]     Checking parking_lot v0.12.0
[INFO] [stderr]     Checking random_color v0.5.1
[INFO] [stderr]     Checking num-integer v0.1.44
[INFO] [stderr]     Checking num-complex v0.4.0
[INFO] [stderr]     Checking regex v1.5.5
[INFO] [stderr]     Checking ndarray v0.15.4
[INFO] [stderr]     Checking env_logger v0.8.4
[INFO] [stderr]    Compiling pyo3-ffi v0.16.4
[INFO] [stderr]    Compiling pyo3 v0.16.4
[INFO] [stderr]    Compiling pyo3-macros-backend v0.16.4
[INFO] [stderr]    Compiling structopt-derive v0.4.18
[INFO] [stderr]    Compiling derive_more v0.99.17
[INFO] [stderr]    Compiling pyo3-macros v0.16.4
[INFO] [stderr]     Checking structopt v0.3.26
[INFO] [stderr]     Checking light_phylogeny v1.4.2
[INFO] [stderr]     Checking numpy v0.16.2
[INFO] [stderr]  Documenting phylodm v2.0.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 12.97s
[INFO] running `Command { std: "docker" "inspect" "6f3df92c831d37bca71a10f10537b65452a0476986dba7bd7a229941c77686a0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "6f3df92c831d37bca71a10f10537b65452a0476986dba7bd7a229941c77686a0", kill_on_drop: false }`
[INFO] [stdout] 6f3df92c831d37bca71a10f10537b65452a0476986dba7bd7a229941c77686a0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTC_BOOTSTRAP=1" "-e" "DOCS_RS=1" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d190cb871061d98bc6d0581d85cb2ecb09a0f8a142ba5463de30be9999fc3251" "/opt/rustwide/cargo-home/bin/cargo" "+1.61.0" "rustdoc" "--lib" "-Zrustdoc-map" "--frozen" "--message-format=json" "--" "-Z" "unstable-options" "--document-private-items", kill_on_drop: false }`
[INFO] [stdout] 724e399071629c640b5323f86e2e4ce2aa362dcef1e10e236a2e82481fb5ba36
[INFO] running `Command { std: "docker" "start" "-a" "724e399071629c640b5323f86e2e4ce2aa362dcef1e10e236a2e82481fb5ba36", kill_on_drop: false }`
[INFO] [stderr] warning: only one of `license` or `license-file` is necessary
[INFO] [stderr] `license` should be used if the package license can be expressed with a standard SPDX expression.
[INFO] [stderr] `license-file` should be used if the package uses a non-standard license.
[INFO] [stderr] See https://doc.rust-lang.org/cargo/reference/manifest.html#the-license-and-license-file-fields for more information.
[INFO] [stderr]    Compiling libc v0.2.121
[INFO] [stderr]    Compiling proc-macro2 v1.0.36
[INFO] [stderr]    Compiling autocfg v1.1.0
[INFO] [stderr]    Compiling unicode-xid v0.2.2
[INFO] [stderr]     Checking cfg-if v1.0.0
[INFO] [stderr]    Compiling target-lexicon v0.12.3
[INFO] [stderr]    Compiling syn v1.0.89
[INFO] [stderr]    Compiling version_check v0.9.4
[INFO] [stderr]    Compiling once_cell v1.10.0
[INFO] [stderr]    Compiling getrandom v0.1.16
[INFO] [stderr]    Compiling memchr v2.4.1
[INFO] [stderr]    Compiling parking_lot_core v0.9.2
[INFO] [stderr]     Checking ppv-lite86 v0.2.16
[INFO] [stderr]     Checking smallvec v1.8.0
[INFO] [stderr]     Checking unicode-width v0.1.9
[INFO] [stderr]     Checking scopeguard v1.1.0
[INFO] [stderr]    Compiling log v0.4.16
[INFO] [stderr]    Compiling unicode-segmentation v1.9.0
[INFO] [stderr]     Checking regex-syntax v0.6.25
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]     Checking strsim v0.8.0
[INFO] [stderr]     Checking ansi_term v0.12.1
[INFO] [stderr]     Checking bitflags v1.3.2
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]    Compiling unindent v0.1.8
[INFO] [stderr]     Checking xmlparser v0.13.3
[INFO] [stderr]     Checking lazy_static v1.4.0
[INFO] [stderr]     Checking humantime v2.1.0
[INFO] [stderr]     Checking termcolor v1.1.3
[INFO] [stderr]     Checking svg v0.8.2
[INFO] [stderr]    Compiling convert_case v0.4.0
[INFO] [stderr]     Checking getopt v1.1.3
[INFO] [stderr]     Checking either v1.6.1
[INFO] [stderr]     Checking matrixmultiply v0.3.2
[INFO] [stderr]     Checking itertools v0.10.3
[INFO] [stderr]     Checking textwrap v0.11.0
[INFO] [stderr]    Compiling indoc v1.0.4
[INFO] [stderr]     Checking roxmltree v0.14.1
[INFO] [stderr]    Compiling heck v0.3.3
[INFO] [stderr]    Compiling num-traits v0.2.14
[INFO] [stderr]    Compiling lock_api v0.4.7
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]     Checking aho-corasick v0.7.18
[INFO] [stderr]    Compiling quote v1.0.16
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]    Compiling pyo3-build-config v0.16.4
[INFO] [stderr]     Checking clap v2.34.0
[INFO] [stderr]     Checking rand_core v0.5.1
[INFO] [stderr]     Checking parking_lot v0.12.0
[INFO] [stderr]     Checking rand_chacha v0.2.2
[INFO] [stderr]     Checking rand_pcg v0.2.1
[INFO] [stderr]     Checking regex v1.5.5
[INFO] [stderr]     Checking rand v0.7.3
[INFO] [stderr]     Checking num-complex v0.4.0
[INFO] [stderr]     Checking ndarray v0.15.4
[INFO] [stderr]     Checking env_logger v0.8.4
[INFO] [stderr]     Checking random_color v0.5.1
[INFO] [stderr]    Compiling pyo3-ffi v0.16.4
[INFO] [stderr]    Compiling pyo3 v0.16.4
[INFO] [stderr]    Compiling pyo3-macros-backend v0.16.4
[INFO] [stdout] error[E0277]: the trait bound `proc_macro2::Span: From<proc_macro::Span>` is not satisfied
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/proc-macro-error-1.0.4/src/lib.rs:549:37
[INFO] [stdout]     |
[INFO] [stdout] 549 |                 first: self.clone().into(),
[INFO] [stdout]     |                                     ^^^^ the trait `From<proc_macro::Span>` is not implemented for `proc_macro2::Span`
[INFO] [stdout]     |
[INFO] [stdout]     = note: required because of the requirements on the impl of `Into<proc_macro2::Span>` for `proc_macro::Span`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0277]: the trait bound `proc_macro2::Span: From<proc_macro::Span>` is not satisfied
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/proc-macro-error-1.0.4/src/lib.rs:550:36
[INFO] [stdout]     |
[INFO] [stdout] 550 |                 last: self.clone().into(),
[INFO] [stdout]     |                                    ^^^^ the trait `From<proc_macro::Span>` is not implemented for `proc_macro2::Span`
[INFO] [stdout]     |
[INFO] [stdout]     = note: required because of the requirements on the impl of `Into<proc_macro2::Span>` for `proc_macro::Span`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to 2 previous errors
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] For more information about this error, try `rustc --explain E0277`.
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `proc-macro-error` due to 3 previous errors
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] running `Command { std: "docker" "inspect" "724e399071629c640b5323f86e2e4ce2aa362dcef1e10e236a2e82481fb5ba36", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "724e399071629c640b5323f86e2e4ce2aa362dcef1e10e236a2e82481fb5ba36", kill_on_drop: false }`
[INFO] [stdout] 724e399071629c640b5323f86e2e4ce2aa362dcef1e10e236a2e82481fb5ba36